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[+] Show/hide bicluster #229 rows and columns.
bicluster 229
Phaeodactylum tricornutum
25x81
[+] Show/hide bicluster #229 rows (genes).
bicluster 229 genes
Phaeodactylum tricornutum
25
[+] Show/hide bicluster #229 rows (short gene names).
bicluster 229 short names
Phaeodactylum tricornutum
25
short_name
[+] Show/hide bicluster #229 rows (long gene names).
bicluster 229 long names
Phaeodactylum tricornutum
25
long_name
[+] Show/hide bicluster #229 rows (NCBI RefSeq gene IDs).
bicluster 229 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #229 gene upstream sequences.
bicluster 229 upstream sequences
Phaeodactylum tricornutum
25
upstream
[+] Show/hide bicluster #229 columns (arrays; conditions).
bicluster 229 arrays
Phaeodactylum tricornutum
81
[+] Show/hide bicluster #229 ratios.
bicluster 229 ratios
Phaeodactylum tricornutum
25x81
GENES GSE12015_Si_free_22v19_1 GSE12015_Si_free_22v19_2 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_3 GSE17237_highlight_30min_1 GSE17237_highlight_30min_3 GSE17237_highlight_3hr_2 GSE17237_highlight_3hr_3 GSE17237_highlight_6hr_1 GSE17237_highlight_6hr_3 GSE34988_Ammonia_1 GSE34988_Ammonia_2 GSE34988_Ammonia_3 GSE34988_Ammonia_4 GSE34988_Ammonia_5 GSE34988_Cadmium_1 GSE34988_Cadmium_2 GSE34988_Cadmium_5 GSE34988_Control_2 GSE34988_Control_5 GSE34988_Copper_4 GSE34988_Copper_5 GSE34988_Dispersant_1 GSE34988_Dispersant_2 GSE34988_Dispersant_4 GSE34988_Dispersed_oil_1 GSE34988_Dispersed_oil_2 GSE34988_Dispersed_oil_3 GSE34988_Dispersed_oil_5 GSE34988_Mixture_1 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Mixture_4 GSE34988_Mixture_5 GSE34988_Oil_1 GSE34988_Oil_2 GSE34988_Oil_3 GSE34988_Oil_4 GSE34988_Oil_5 GSE34988_Silver_2 GSE34988_Silver_3 GSE34988_Silver_4 GSE34988_Silver_5 GSE34988_Simazine_2 GSE34988_Simazine_4 GSE42039_light_0.5h_1 GSE42039_light_0.5h_2 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42039_light_6h_1 GSE42039_light_6h_2 GSE42039_light_6h_3 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_1 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_30min_2 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_16hr_dark_7.5hr_2 GSE55959_BlueLight_0.5h_rep1 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_0.5h_rep3 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_24h_rep3 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_24h_rep1 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_24h_rep3 GSE55959_GreenLight_6h_rep1 GSE55959_GreenLight_6h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_0.5h_rep2 GSE55959_RedLight_24h_rep3 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
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44204 0.311538473209787 0.181957769264172 0.281409986714324 0.98011848153891 0.774960707562313 -0.173558371382292 0.643010194346342 0.920676738502237 0.895155079510786 0.339974238797852 -3.23281501078669 -4.15246609661498 -1.84022801540943 -2.2695808366022 -3.33292106600802 -0.575000465559484 -0.291729069543888 -0.441677525362294 0.373274496763915 0.328211282545183 0.209688795471698 0.0839679232393172 -0.546808587978019 -0.174483242307042 -0.357553596164866 -0.0576928931902217 -0.0631861616659703 -0.194883778487064 -0.107161980729243 -3.17654137976555 -3.77722713076144 -2.64409485094988 -2.48239039005991 -3.16689948582452 -0.199992896599644 -0.117025971327265 -0.578191925449604 -0.02193239347429 -0.130140861612788 0.690843468179506 0.707912369667369 0.813487878532378 0.655221158696273 0.417959098929896 0.244602321852223 -1.4458749620984 -1.40269609328233 0.0965148270070045 0.181089990059658 -0.107694719570996 0.0869055467798993 0.103703411950507 0.326122477613648 0.534738908439568 1.14037451201142 0.565499979643097 0.960016974663641 0.792081324046492 0.75873218594912 0.502591389845118 0.258231476288475 -1.62716159032702 -2.13310904663144 -2.01183539224361 0.106646983261502 -0.0871772548065558 -0.0660683206939633 -0.280774580284188 -0.257840528760192 -0.302514433943645 -0.160873880157872 0.121563911973727 -0.15732042829775 -0.223320975443499 -0.10370379190871 -0.267020393303587 -1.03701321228798 -0.145540148572584 -0.299762097998878 -0.367767527111818 -0.517596413595323
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49630 -0.0614838416604055 -0.023360669842381 0.918411968447519 0.683235429791873 0.706765630524112 -0.638591451498071 0.398296087618825 1.00870356418184 0.782942001249862 0.622822266755183 -3.29314223152426 -3.05190495305019 -3.12436359066599 -2.76667293108338 -3.22067116768474 -0.716294441516041 -0.716310474963936 -0.74653058055684 0.261690589376043 0.272023507136325 0.245423219629702 0.160508747683056 -0.282578456179563 -0.103454163697765 -0.132244216032878 -0.192455458966176 -0.282968518961594 -0.229279716411745 -0.289332229417318 -3.23240055773801 -3.61905252232155 -3.00235918619767 -2.63924852149766 -4.42383050782697 -0.395528124769312 0 -0.464837848714418 -0.323727618567758 -0.306455686353999 0.129714345461021 0.0093115847165525 0.159857311952468 0.135401531278526 -0.130227246893512 -0.0934203017110944 -1.31451307466779 -1.17952220466284 0.159682387233294 0.235306058594469 0.216425533989508 0.358532808468048 0.152625471958252 0.807486354253764 0.690730291262374 1.05636912683521 0.942613151358384 0.737769757448778 0.797827963398836 0.479651954986529 0.548817819789333 0.328175437191864 -1.35788595250528 -1.60633131010226 -1.71934990911193 0.0603549170112438 -0.0382806283436831 -0.0198003297069153 0.164934140547836 0.0101821731755626 0.101211203970642 -0.0979239317092544 -0.138817466512854 -0.141147183121742 0.281547190225538 0.320506254752807 0.585529560776613 -1.25885130369145 -0.346984406727335 0.20595327691439 0.0935423227293213 0.315948665362597
50148 -0.475115236987221 -0.649553173681033 1.15919487536255 0.737192307519926 0.584925685388502 -0.730163002811589 0.651349340288556 0.874124282048826 0.822384292596244 0.348676045040144 -3.67510881335067 -3.21083520231469 -2.21148531916792 -2.95068810637201 -3.80392581227182 -1.00531441459643 -0.605677173861942 -0.95982630968737 0.16850290439667 0.300882444242749 0.213605158368249 0.359845997136833 -0.487368959103388 -0.347644551024551 -0.279564169112084 -1.37667645760485 -0.300634267453623 -0.553675924774982 -0.785795629596691 -2.90920275620407 -3.27914155900354 -2.87679937455381 -3.26115133759457 -3.79981749188081 -0.532865749793772 -0.300174300256577 -1.17886311508377 -0.322854807462742 -0.543689407072534 0.454047683585629 0.415923756069334 0.695645796931454 0.683058926044763 0.606145646262735 0.404810679889271 -0.166852614772234 -0.232935017684393 0.0857236617394043 0.237936219893064 0.610221378355492 0.873067136054304 1.0596213525196 0.153493393615296 0.0679914783054028 0.930837022438354 0.0509219512092224 0.444011041656071 0.181787880570649 0.0967668847134558 -0.123978558367394 -0.116141168619775 -0.38090319568245 -0.522110696384735 -0.876690258254978 0.15750115111328 0.107143888365068 -0.0293314677870103 0.202399625602636 0.413633145880991 0.200144787242084 -0.125307918522154 -0.114467583938571 -0.191314613355759 0.423486544798665 0.50576904670254 0.601050736100961 -0.505051781257212 -0.212041700477683 0.693670247563103 0.503762164594098 0.603950217433301
54086 0.123174684869513 -0.0946822038971054 1.45796894910535 0.442153190876674 0.946531719122123 0.258640799868558 0.242762184502095 0.435413135144721 1.01503368328788 0.784931436329938 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.646570497590188 -0.478037909807908 -0.037254762032919 0 0.00157402895222579 0.157081457569044 -0.15087772487263 0.281313831720149 -0.133839134523346 0.123629182450871 0.0523650482982306 0.235414301918166 0.0893225568547669 0.252729458835096 0.134344692471856 0.238864829015508 -0.800703915627214 -1.04253712653827 -0.814435241679333 -0.184151577379545 -0.0806407707645651 -0.0466229947892587 -0.231311808534349 -0.387250137565618 -0.204284955429912 -0.11804574580614 -0.327672490902109 -0.0657476371781227 -0.374054142257995 -0.237700184909302 -0.281522710454525 -0.771373330312376 -0.0174359875491747 -0.130841001564546 -0.165833528128094 -0.314824652522917
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9348 0 -0.0511094381215149 0.396905752593737 0.65657876234738 0.558641764603462 -0.186307557146313 0.769343349372277 0.816266495348419 0.421270519087543 0.144809424430321 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.32759741303757 -1.4448294505461 -0.123621651412916 0.00528502055197006 0.463954713842274 0.277989550068809 0.386390037679636 0.696738061299204 0.399528200400253 -0.358876484349806 0.669990606031379 -0.0397294564365162 0.0377420621221073 -0.116667486844629 -0.105662658581213 0.0257067565153562 -0.961535313025196 -0.696772429574129 -1.21462703154587 -0.226470762421524 -0.299833009765462 -0.315904489650983 -0.0926074389063079 0.387630176466145 -0.168239736145676 -0.18143290353631 0.055255591004458 -0.148307917887783 0.439567838733471 0.302684136257408 0.147698693799639 -0.437600707958428 -0.437094370346548 -0.113770583078918 0.0583918077341317 -0.0145208684012818
[+] Show/hide bicluster #229 motif PSSM #1. bicluster 229 motif PSSM #1 Phaeodactylum tricornutum 11x4
POSITION A C G T
1 0 0.625 0 0.375
2 0 0 0 1
3 0 0 1 0
4 1 0 0 0
5 0.125 0.875 0 0
6 0.4375 0 0.1875 0.375
7 0 0 1 0
8 0.25 0 0 0.75
9 0.0625 0 0.9375 0
10 0.9375 0 0 0.0625
11 0.6875 0 0.3125 0 [+] Show/hide bicluster #229 motif PSSM #2. bicluster 229 motif PSSM #2 Phaeodactylum tricornutum 11x4
POSITION A C G T
1 0 0.086957 0.652174 0.26087
2 0.478261 0.173913 0.347826 0
3 0.956522 0 0 0.043478
4 0.695652 0.217391 0 0.086957
5 1 0 0 0
6 0.869565 0.130435 0 0
7 0 0.217391 0.608696 0.173913
8 0.565217 0 0.173913 0.26087
9 1 0 0 0
10 0.73913 0.173913 0 0.086957
11 1 0 0 0 |