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[+] Show/hide bicluster #234 rows and columns.
bicluster 234
Phaeodactylum tricornutum
28x77
[+] Show/hide bicluster #234 rows (genes).
bicluster 234 genes
Phaeodactylum tricornutum
28
[+] Show/hide bicluster #234 rows (short gene names).
bicluster 234 short names
Phaeodactylum tricornutum
28
short_name
[+] Show/hide bicluster #234 rows (long gene names).
bicluster 234 long names
Phaeodactylum tricornutum
28
long_name
[+] Show/hide bicluster #234 rows (NCBI RefSeq gene IDs).
bicluster 234 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #234 gene upstream sequences.
bicluster 234 upstream sequences
Phaeodactylum tricornutum
28
upstream
[+] Show/hide bicluster #234 columns (arrays; conditions).
bicluster 234 arrays
Phaeodactylum tricornutum
77
[+] Show/hide bicluster #234 ratios.
bicluster 234 ratios
Phaeodactylum tricornutum
28x77
GENES GSE12015_Si_free_22v19_1 GSE12015_Si_free_22v19_2 GSE17237_highlight_12hr_2 GSE17237_highlight_12hr_3 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3.1 GSE17237_highlight_3hr_1 GSE17237_highlight_3hr_2 GSE17237_highlight_48hr_1 GSE17237_highlight_48hr_2 GSE17237_highlight_6hr_2 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE34988_Ammonia_1 GSE34988_Ammonia_2 GSE34988_Ammonia_3 GSE34988_Ammonia_4 GSE34988_Ammonia_5 GSE34988_Cadmium_1 GSE34988_Cadmium_5 GSE34988_Control_2 GSE34988_Control_4 GSE34988_Control_5 GSE34988_Control_6 GSE34988_Copper_2 GSE34988_Dispersant_3 GSE34988_Dispersant_4 GSE34988_Dispersed_oil_1 GSE34988_Dispersed_oil_3 GSE34988_Dispersed_oil_5 GSE34988_Mixture_1 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Mixture_4 GSE34988_Mixture_5 GSE34988_Oil_5 GSE34988_Salinity_15ppt_2 GSE34988_Salinity_15ppt_5 GSE34988_Silver_3 GSE34988_Silver_4 GSE34988_Silver_5 GSE34988_Simazine_3 GSE34988_Simazine_5 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_0.5h_1 GSE42039_light_0.5h_2 GSE42039_light_0.5h_3 GSE42514_dark_8hr_light_3hr_1 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_1 GSE42514_light_0.5hr_2 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_1 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_30min_2 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_16hr_dark_7.5hr_2 GSE42514_light_6hr_1 GSE42514_light_6hr_2 GSE55959_BlueLight_0.5h_rep1 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_0.5h_rep3 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_24h_rep3 GSE55959_BlueLight_6h_rep1 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_0.5h_rep3 GSE55959_RedLight_0.5h_rep1 GSE55959_RedLight_0.5h_rep2 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_24h_rep2
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54658 0.0672448058774949 0.155857490621449 -0.285154940246332 0.172272025241767 0.32449750573305 0.0645412243907798 -0.704673380367241 -0.0183591910050681 0.105868071177955 0.339486327232195 -0.482015411642809 0.00682997694621813 0.0306310992299955 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.34925171577334 2.2938915102127 2.4019725206374 2.00538080158851 1.95729293898554 2.10045116566762 -1.18778413143734 -1.67436072059541 -1.20904068481166 -0.954584128150119 -0.492025746933165 -0.713689567849408 -0.287928002236575 -0.787748623796821 -0.0462774611778236 -0.231867446096832 0.379710978614967 0 -0.415599511861186 -1.32325824116534 -1.38091839688433 1.25025828546488 1.31735850408191 1.38086688363837 0.170899115196755 0.142318277843194 -1.4736895586151 1.72147944008306 1.62399951779664 1.59073600884181 2.26123348488313 2.12705246026813 2.34174882206793 0.448953776070554
54743 0.32548150911467 0.264487986757626 -0.0765777533542201 0.771324855797078 -0.416006705271168 0.349234239688271 -1.22419017824958 0 -0.546139087464583 -0.128638426930618 -1.15813187732719 -0.276165544044339 -0.180687519458468 1.73273694085289 1.79371938400683 1.65468324076637 0.987599808293793 0.300492752531203 -0.432587340732863 -1.21823957493161 -0.164942919891512 0.67891952466305 -0.392849037924627 -0.339032696689977 -0.956236881192558 -0.665686150012544 -0.658008397368375 -0.140142586967934 0.0329200473329905 0.62759928542562 1.07222303188535 1.33297748160832 1.99934097819786 1.58852617280161 1.77297035278834 -0.700741501426089 -1.45879698481342 -0.65239058513133 -0.50127701029952 -0.537963262874951 -0.430437512087253 -0.243780695568284 -0.310979710470982 1.53896215617117 1.79407732434378 1.73283792579621 1.65479794665608 1.35018590594927 1.6732238758558 -0.989764681824844 -1.14373323537487 -0.761740141941007 -0.698100136306369 -0.922259220000544 -1.52561661815972 -0.754957433872043 -1.24898925903644 -0.815378672255235 -0.416368412478662 -0.375551900800973 -0.327687867857258 -0.209534763915882 -1.45087235279916 -1.82355245124872 1.68950074701625 1.44819124784287 0.686978076898745 0.259859112369427 0.222521070226272 0.557077541805545 1.98796035349323 1.70033900082141 1.39152999021515 2.18574341682807 2.45045017549418 2.15865122925468 1.99962126440861
[+] Show/hide bicluster #234 motif PSSM #1. bicluster 234 motif PSSM #1 Phaeodactylum tricornutum 17x4
POSITION A C G T
1 0 0.2 0 0.8
2 0.133333 0 0 0.866667
3 0.333333 0.2 0.333333 0.133333
4 0.133333 0.533333 0 0.333333
5 0.133333 0.866667 0 0
6 0.866667 0 0.133333 0
7 0 0.2 0 0.8
8 0.266667 0 0.6 0.133333
9 0.266667 0.2 0.066667 0.466667
10 0 0 0.2 0.8
11 0.066667 0.266667 0.333333 0.333333
12 0 0.066667 0 0.933333
13 0.066667 0 0 0.933333
14 0 0.933333 0.066667 0
15 0.133333 0.066667 0.266667 0.533333
16 0.066667 0 0.066667 0.866667
17 0 0.066667 0.066667 0.866667 [+] Show/hide bicluster #234 motif PSSM #2. bicluster 234 motif PSSM #2 Phaeodactylum tricornutum 20x4
POSITION A C G T
1 0.210698 0.209302 0.569302 0.010698
2 0.8 0.12 0.08 0
3 0.6 0.2 0.2 0
4 0.850698 0.089302 0.049302 0.010698
5 0.450698 0.169302 0.009302 0.370698
6 0.250698 0.209302 0.529302 0.010698
7 0.410698 0.129302 0.289302 0.170698
8 0.28 0.12 0.2 0.4
9 0.08 0.12 0 0.8
10 0.04 0.24 0.72 0
11 0 0.28 0.72 0
12 0 0.28 0.12 0.6
13 0.36 0.08 0 0.56
14 0.12 0.36 0.24 0.28
15 0 0.92 0 0.08
16 0 0.12 0.88 0
17 0.84 0.08 0 0.08
18 0.32 0.4 0.16 0.12
19 0.28 0.28 0.28 0.16
20 0.52 0 0.24 0.24 |