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[+] Show/hide bicluster #246 rows and columns.
bicluster 246
Phaeodactylum tricornutum
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[+] Show/hide bicluster #246 rows (genes).
bicluster 246 genes
Phaeodactylum tricornutum
25
[+] Show/hide bicluster #246 rows (short gene names).
bicluster 246 short names
Phaeodactylum tricornutum
25
short_name
[+] Show/hide bicluster #246 rows (long gene names).
bicluster 246 long names
Phaeodactylum tricornutum
25
long_name
[+] Show/hide bicluster #246 rows (NCBI RefSeq gene IDs).
bicluster 246 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #246 gene upstream sequences.
bicluster 246 upstream sequences
Phaeodactylum tricornutum
25
upstream
[+] Show/hide bicluster #246 columns (arrays; conditions).
bicluster 246 arrays
Phaeodactylum tricornutum
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[+] Show/hide bicluster #246 ratios.
bicluster 246 ratios
Phaeodactylum tricornutum
25x81
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_11v18_2 GSE12015_Si_free_23v20_1 GSE12015_Si_free_23v20_2 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_2 GSE17237_highlight_12hr_3 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_1 GSE17237_highlight_30min_2 GSE17237_highlight_30min_3 GSE17237_highlight_3hr_2 GSE17237_highlight_3hr_3 GSE17237_highlight_48hr_1 GSE17237_highlight_48hr_2 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_1 GSE17237_highlight_6hr_2 GSE17237_highlight_6hr_3 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE31131_Cadmium_1.2mg_3 GSE34988_Ammonia_1 GSE34988_Ammonia_2 GSE34988_Ammonia_3 GSE34988_Ammonia_4 GSE34988_Ammonia_5 GSE34988_Control_2 GSE34988_Control_3 GSE34988_Control_4 GSE34988_Control_5 GSE34988_Copper_1 GSE34988_Mixture_1 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Mixture_4 GSE34988_Mixture_5 GSE34988_Oil_2 GSE34988_Salinity_15ppt_1 GSE34988_Salinity_15ppt_3 GSE34988_Salinity_15ppt_4 GSE34988_Simazine_1 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_24h_3 GSE42039_light_6h_1 GSE42039_light_6h_2 GSE42039_light_6h_3 GSE42514_dark_8hr_light_3hr_1 GSE42514_light_0.5hr_1 GSE42514_light_0.5hr_2 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_16hr_dark_7.5hr_1 GSE42514_light_6hr_1 GSE42514_light_6hr_2 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_24h_rep3 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_0.5h_rep3 GSE55959_GreenLight_24h_rep1 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_24h_rep3 GSE55959_GreenLight_6h_rep1 GSE55959_GreenLight_6h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_0.5h_rep1 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_24h_rep3 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
11458 0.297562601527977 0.2091089441876 0.305350973872413 0.565426978945535 3.55078241916809 2.54613523640536 1.34213075567904 1.94821354683838 1.42599205489775 2.19535250913508 1.63811950194467 0.456609509486009 0.743686132540359 0.18027805870543 1.69375629609945 0.842072746181443 1.34854781817855 1.47306720259677 2.26723501353189 -0.598141941505406 1.85945669928888 0.215595545725894 0.313030865316337 0.0436644446609237 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.86673098142195 -1.74170784240951 -1.78012132202397 0.557748706964569 -0.815979453911626 -0.82049679776786 -0.469795300349181 -0.776380640227129 0.634282385750343 1.0347795077979 -1.63574800962079 -0.847879025620414 0.225811200078141 -1.9352127904532 -0.45745477127642 0.300749609711252 0.27575227387621 -0.920601798506187 -1.37251275335346 -0.760065666931876 -0.565000213033231 -0.350079639271769 -0.278735193022141 0.199945173913579 0.0501757606217971 0.242117437623574 -0.770079672092928 -0.830877595777288 -0.627631908472913 -0.0895679102401849 -0.160674644041337 -0.0348853615816244 -0.16251715468756 -0.10175829146465 -0.768919425419838 -0.777288215077328 -0.627253578589979
11850 0.272049050866339 0.311636786342724 0.186742146136081 0.154352180746311 2.30130037634122 2.11456889356823 1.51609563759233 1.9906339560398 1.87759164390912 1.96715856219434 1.18970875425359 0.429946799840501 0.439903715126986 0.973362446335336 1.45097714503464 0.739445581883423 1.195101750137 2.20298150279882 1.11563570254 -0.507413466857893 1.23454286437088 0.0774893266639618 0.165861948282964 -0.512454571759297 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.30343275714829 -2.4777125975341 -2.25942903603505 0.361655992812043 -1.16099502109727 -0.864326453119087 -1.26749521759392 -1.60939589971819 0.628896920046693 0.878467761140767 -1.12571622224521 -1.83249787379887 0.0694038284395801 -0.722357494930565 -1.22808328130675 0.45488469858996 0.452159788189116 -1.10245524419651 -1.05159614409015 -0.426646361434963 -0.334377871218826 -0.0743054847726135 -0.0792183240779155 0.386615780865595 0.0965837211490208 0.270155424320687 -1.28370827020351 -0.501759464759275 -0.928567376351885 0.111718741729639 -0.0426743662589316 -0.116663132818637 -0.455650022598772 -0.180804957962587 -0.558688178865882 -0.827959951967105 -1.19888947818218
12238 -0.0840462295424987 0.237688422076497 0.629765059639522 0.714894849446784 3.53268289865967 2.14243349703214 1.71149690893879 1.65272937704555 1.11851796413437 1.82073081904312 1.66960346026462 0.7767078695951 0.491842810040517 0.869934981193419 1.9300286764074 0.730957601805253 1.22717634889916 1.65213786489102 2.00356003194139 -1.02981021737495 1.88423444487634 0.611596044406479 0.449249938210658 0.0973801403406404 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.84543605479652 -1.67454638799569 -1.59703507403175 0.701659641201265 -0.154686429344771 -0.309626217681046 -0.570167990634196 -0.613810841900141 0.711341256622995 0.616694930521163 -1.0450789784446 -0.894892686834079 0.124041581450786 -1.0060689345318 -0.409499053458826 0.304592601770391 0.281314322214608 -1.141554155522 -1.06572907795925 -0.907965442818475 -0.377930081466641 -0.495631398111861 -0.613682764405533 0.125216086046251 0.913578512151378 0.223060020757626 -0.749513634258432 -0.589355810114372 -0.649365403886826 -0.687773035274307 -0.873970703346334 0.0613626723537209 0.474245375004746 -0.226006898920863 -0.917183715540976 -1.15976534973692 -1.07420569341643
13088 0.299532230047586 0.535844727517805 0.259884593987336 0.61545466341656 2.76974043512806 1.95740442518249 1.68360917844643 1.99499730677073 2.01366945537244 2.08583759291544 1.66389863937647 0.123178915524039 0.616024204855204 1.07376245644635 1.67133414445666 1.19604080067661 1.14713260962229 1.77410962771062 1.54345163833566 -0.383873443395382 1.8818977049522 0.638831035503195 0.403402743249875 0.238147620185415 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.31559887699482 -1.45930444937947 -1.42904708985829 0.637210200366971 -0.699204779808477 -0.541979454828942 -1.18143225813436 -0.682064457727096 0.881031006554976 0.893004373524859 -1.52426135926056 -0.86053870348614 0.352204542869711 -1.10181513251552 -0.192594163882374 0.411815779777836 0.341443599498971 -0.953415826633827 -1.22484180788279 -0.542332562363307 -1.07372380363231 -1.16103237864088 -0.708966132994119 0.379219346613474 -0.112702393157543 0.346398187810852 -1.30597057234289 -0.773641029213983 -0.778920516706907 -0.129383571394692 -0.493160920971021 -0.096686098208095 -0.356803751721644 0.109922643417528 -0.639370476771856 -0.664556859427948 -0.839872556085131
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21181 0.18021512593145 0.103136950624311 0.274751972272013 0.317098536055212 2.64792026967794 2.83194394889738 1.37624367274133 2.54467823279125 2.87834872504314 2.57923711491028 1.43944406188232 0.693500054314123 1.41771544566743 0.567114134475564 1.53016043095525 1.86758453747933 1.18571942452008 2.15740590585589 1.38642170649273 -0.283882782772694 1.6668321082601 0.322189410236342 0.276256389669574 -0.103703725791468 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.21643644808036 -1.20691629689451 -1.19669977486038 0.57667289148427 -1.20961109364477 -1.07574323528021 -1.0052161070312 0.332032410284989 0.786757815724552 0.686656823829138 -0.691342739292879 -1.13906764758415 0.387170357362543 -0.0754218405110232 0.0176922828578093 0.444349789790723 0.487164637563285 -0.927975895804533 -0.857413756800199 -0.811973971920342 -1.07353652586938 -0.593230395135005 -0.412516977480544 0.368023898437338 -0.0965059128645707 0.404826124822105 -1.00400360217031 -0.901792118886429 -0.995546655183524 -0.418268412019759 -0.282372105485241 -0.212963493209805 -0.245841237994053 0.199282077627949 -0.883944577539946 -0.855933192315364 -1.00764441373087
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47027 0.153800096162468 0.070642308410756 0.0815596716072098 -0.0603660499466896 2.82745305160107 2.31528470140692 1.21127912380332 1.88383050788307 1.70136652622183 2.21490999961008 1.43602814368333 0.404365195737249 0.989814604255168 0.462166826754389 1.4582716904853 0.797966335931442 1.02985345306735 1.52021959667386 1.6463151415929 -0.472726472092916 1.76545144818501 0.33027346512506 0.223499330220509 0.433101089376256 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.09591306390864 -2.02744482821064 -2.03775822068128 0.486534338633173 -1.00527180428124 -1.25409319722559 -0.305202736332029 -1.30236265859066 0.73716527329996 0.967318792117271 -1.92790190127878 -0.91318265216685 0.225408946949674 -2.61723280045815 -0.571906029894796 0.271864418399035 0.272190235034653 -1.02282070587803 -0.583875096049123 -0.917971788359188 -0.301558811110052 -0.290856692103218 -0.291920791975406 0.149526231460085 -0.14966062187062 0.149245784482186 -0.818466145701586 -0.952663697329974 -0.768054549865166 -0.596156031758933 -0.497759083640557 -0.415329603945618 -0.35763690846616 -0.121019946515796 -1.40534601298323 -0.917750855458892 -0.878968073744073
48822 -0.256949195913584 0.152292596137922 0.297800788867347 -0.248812224609636 2.91494991357381 2.38406518698199 0.93535642280022 1.82088865044776 1.82696505343033 2.07527669890458 1.37065566883919 0.317796199233372 1.34157078288129 0.0557019603063506 1.20146649638842 1.42371829464835 1.07815069627709 1.59535573817086 1.52008875360934 -0.502209477148849 1.50186911756906 0.477737943119888 0.28739503850571 0.51214057914761 1.97030196939778 2.15996692070872 2.29005871187662 2.13649510901443 1.94394909548744 0.163905205171225 0.150689519295649 0.256520581109697 0.195415359461647 0.24115122368708 2.06185199082924 2.15871803920718 2.19164884071963 1.65115693570285 1.93973491018459 0.309289534051588 -0.619375782895814 -0.791588749612206 -0.276876779996886 -0.531977761160627 -2.57215511350983 -2.78960906313238 -2.69599805250743 0.281987635074935 -0.592258239255167 -0.297445664019785 -0.752189424217393 0.140216061521475 0.988733333894678 1.00705388859372 -1.11008986620178 -0.450037450246462 0.0622971511240703 -0.306936545063871 0.189522039605317 0.156732658386839 0.166414915728633 -0.632912010891714 -1.13897021854842 -0.863998462750656 -1.00824678977784 -0.774935383640627 -0.578173743292803 -0.0376944770049636 -0.699224725138936 -0.0259915324357135 -0.973881981623505 -0.859079039203615 -1.26796117650479 -0.417699081700999 -0.70088733512781 -0.43949340491247 -0.4665114030668 -0.100791020413432 -0.752202119646524 -0.676312140139715 -1.36715992769145
54376 -0.199648554290784 0.0499264729458948 0.480910660949322 -0.255720476709597 2.83108283042444 2.31601549640562 1.48250911827361 1.24657276157822 1.5118039491138 1.72079279956439 1.30625637547048 0.547237698198753 0.469932658099286 0.406901220603785 1.34802720904884 0.74589722098023 0.835826689494874 1.47037394486778 1.62505274065791 -0.0464787528833922 1.60848953455518 0.455178046356924 0.521101035930101 0.219035542887928 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.08859574367777 -2.13203844150813 -2.15544069640064 0.727918490137691 -1.02735770399095 -0.800502410048931 -0.653992127682418 -1.35829013077852 0.483548813835997 1.03560088763981 -0.785169761992605 -0.732150170618674 0.372121909877844 -2.36735777330388 -0.737237837266003 0.418541606361376 0.481846804270658 -0.794976964244089 -1.18972960128743 -0.699622431731927 -1.16396202378094 -0.664105597588319 -0.352220425923455 0.135985433503167 -0.327770759548939 0.200602475721312 -1.22482723355479 -0.29010723853775 -0.581668019115519 -0.208253485697632 0 -0.182803242662474 -0.469644733601827 0.0760519636728472 -0.310169390795027 -0.656086911662914 -0.485665335650401
[+] Show/hide bicluster #246 motif PSSM #1. bicluster 246 motif PSSM #1 Phaeodactylum tricornutum 11x4
POSITION A C G T
1 0.772287 0.186046 0.01938 0.022287
2 0 0.5 0.166667 0.333333
3 0 0 0 1
4 0.333333 0 0.666667 0
5 1 0 0 0
6 0 1 0 0
7 0 0 0 1
8 0 0 0.916667 0.083333
9 0 0 0 1
10 0.333333 0 0.583333 0.083333
11 1 0 0 0 [+] Show/hide bicluster #246 motif PSSM #2. bicluster 246 motif PSSM #2 Phaeodactylum tricornutum 11x4
POSITION A C G T
1 0.826087 0 0.173913 0
2 0.782609 0.173913 0 0.043478
3 1 0 0 0
4 0 0.826087 0.173913 0
5 0.043478 0.521739 0.434783 0
6 0.869565 0 0.043478 0.086957
7 0.73913 0.26087 0 0
8 0.73913 0.26087 0 0
9 1 0 0 0
10 0.043478 0.565217 0 0.391304
11 0.130435 0.521739 0.347826 0 |