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[+] Show/hide bicluster #247 rows and columns.
bicluster 247
Phaeodactylum tricornutum
30x83
[+] Show/hide bicluster #247 rows (genes).
bicluster 247 genes
Phaeodactylum tricornutum
30
[+] Show/hide bicluster #247 rows (short gene names).
bicluster 247 short names
Phaeodactylum tricornutum
30
short_name
[+] Show/hide bicluster #247 rows (long gene names).
bicluster 247 long names
Phaeodactylum tricornutum
30
long_name
[+] Show/hide bicluster #247 rows (NCBI RefSeq gene IDs).
bicluster 247 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #247 gene upstream sequences.
bicluster 247 upstream sequences
Phaeodactylum tricornutum
29
upstream
[+] Show/hide bicluster #247 columns (arrays; conditions).
bicluster 247 arrays
Phaeodactylum tricornutum
83
[+] Show/hide bicluster #247 ratios.
bicluster 247 ratios
Phaeodactylum tricornutum
30x83
GENES GSE17237_highlight_30min_2 GSE17237_highlight_30min_3 GSE17237_highlight_3hr_1 GSE17237_highlight_3hr_2 GSE17237_highlight_3hr_3 GSE17237_highlight_48hr_1 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_1 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_2 GSE31131_Cadmium_1.2mg_3 GSE34988_Ammonia_1 GSE34988_Ammonia_2 GSE34988_Ammonia_4 GSE34988_Ammonia_5 GSE34988_Cadmium_1 GSE34988_Cadmium_2 GSE34988_Cadmium_3 GSE34988_Cadmium_4 GSE34988_Cadmium_5 GSE34988_Control_1 GSE34988_Control_2 GSE34988_Control_3 GSE34988_Control_4 GSE34988_Copper_1 GSE34988_Copper_2 GSE34988_Copper_3 GSE34988_Copper_4 GSE34988_Copper_5 GSE34988_Dispersant_2 GSE34988_Dispersant_3 GSE34988_Dispersant_4 GSE34988_Dispersant_5 GSE34988_Dispersed_oil_1 GSE34988_Dispersed_oil_2 GSE34988_Dispersed_oil_3 GSE34988_Dispersed_oil_4 GSE34988_Dispersed_oil_5 GSE34988_Mixture_1 GSE34988_Mixture_2 GSE34988_Oil_1 GSE34988_Oil_2 GSE34988_Oil_3 GSE34988_Oil_4 GSE34988_Oil_5 GSE34988_Salinity_15ppt_1 GSE34988_Salinity_15ppt_2 GSE34988_Salinity_15ppt_3 GSE34988_Salinity_15ppt_4 GSE34988_Salinity_15ppt_5 GSE34988_Silver_1 GSE34988_Silver_2 GSE34988_Silver_3 GSE34988_Silver_4 GSE34988_Silver_5 GSE34988_Simazine_1 GSE34988_Simazine_2 GSE34988_Simazine_3 GSE34988_Simazine_4 GSE34988_Simazine_5 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_0.5h_1 GSE42039_light_0.5h_2 GSE42039_light_0.5h_3 GSE42039_light_24h_1 GSE42514_dark_8hr_light_3hr_1 GSE42514_light_16hr_dark_7.5hr_2 GSE55959_BlueLight_0.5h_rep1 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_0.5h_rep3 GSE55959_BlueLight_6h_rep2 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_0.5h_rep3 GSE55959_RedLight_0.5h_rep2 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_24h_rep3 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
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46557 1.03317027890462 -0.148157996783289 0.091597326777007 0.373337355973126 0.988400237275473 0.177009396239452 -0.779208918410477 0.341327164367442 0.245948226433961 0.52232695433888 0.538208544956208 0.185889419077958 -0.151507927910392 0.329997622016227 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.786554105265383 0.57026803077098 0.490315553086035 0.954200014437177 1.06013177170139 1.05819305857395 0.0884513041818242 0.61473443956471 0.643081852757451 1.58805185594279 1.49407673846726 1.44845691008695 -0.0933969949673566 0.319936141143948 0.317536769353804 0.378843667017228 -0.276528155245271 -0.567618034683214 0.19882886303339 0.601527945480446
48336 NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.24943651836637 -1.63066770482555 -0.843627524705366 -1.07777960163339 -0.219100880355024 -1.60179889712846 -0.92335421712178 -1.19679285536118 -1.59378843116096 0.200423345271463 -1.03046152754788 1.44947646500292 0.606607281641985 -1.146188346753 -2.01669018261913 -1.95053636559642 -3.14095946235305 -2.54378256533505 -1.50740605788218 -1.5291091071803 -1.30342831922742 -2.27682445445972 0.505108989113014 -1.02384016433506 -0.736426639122649 -2.32691179896199 -0.0646372243140324 -1.0282222628981 -1.23684787180937 -1.48531138861208 0.49272861402233 1.65317866554303 -1.50922090563347 -1.22421552981088 -1.91999311681497 -0.291649101127995 -1.53940443583255 -1.2139487569576 -2.23436071412634 -1.047472791488 -1.07733549982022 -2.88389711860442 -1.81172956688145 -1.76288248521294 -2.00160447506629 0.400688711782034 -2.15362704961557 -1.72290040433057 -1.84014659987289 0.286427215627946 0.194427217121936 0.194427217121936 -0.0462597530523309 0.394351548296252 0.0440361484777689 0.384735320343887 -0.0930536880079426 0.324369377018341 0.355656916407313 0.120391269143017 0.441871778707172 0.152396682386349 0.194427217121936 0.561256230049391 0.120391269143017 0.141774832793088 0.276374786435307 0.120391269143017 0.245966359391391
51110 NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.02308020820267 -0.886915808863936 -0.396242084271507 -0.759925833741678 -0.731371757603138 -0.697340673754724 -0.981072251250145 -0.88415645523287 -1.28931726379756 0.111414470101425 -0.654633621195007 1.1376181934112 0.490971955923173 -1.45579499499083 -2.17968165205021 -1.52716284284244 -2.77919899824626 -2.19814337424087 -1.28697751928818 -1.1490990204813 -0.393252969985746 -2.45978224904223 1.90545364926052 -0.889315935943731 -0.816051188443615 -2.49345538784603 0.317778691418379 0.0605229740824508 -1.16448446907135 0.106377474448227 -0.114264923118255 1.21054199269189 -1.48905024458979 -1.0672246391015 -2.02375579611422 -1.01499759393713 -0.654367034085751 -1.86223090268279 -2.40031609078586 -0.31072405907906 -0.955992558873475 -2.59085663882065 -2.01958032703744 -1.92459861122376 -2.6595956949632 -2.26412584210883 -1.94136353428618 -2.37525046125859 -1.07151819227227 0.493063464533946 0.825305611748366 0.37140500268628 0.308215417690732 0.664852153930143 0.551684668389381 0.664852153930143 -0.564666887500801 0.994745458738473 0.473204886970849 0.37140500268628 0.73747433020165 0.392108636096337 0.453182862487129 0.350523653511656 0.350523653511656 0.350523653511656 0.432994678224499 0.350523653511656 0.432994678224499
54547 1.08715071179451 0.0231366769044114 -0.792183040258869 0.506745376382922 0.732494602271017 0.445239213095654 -0.764562919069118 0.430729014786615 1.00483778528069 0.85468213753243 0.770566927733636 0.52234733246286 0.451161817216281 0.608836673931862 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.557824339453256 0.422569964235407 0.62212146236377 0.608227976353961 0.47422509709817 0.586998761694781 0.058690000127782 0.570862884244226 0.526151478254687 1.15808846198223 1.07072076334685 1.39037354026032 -0.73144395959742 -0.197542530470991 -0.241587042412826 0.279927499003933 0.00683446423951307 -0.0925546202725515 -1.04648311705596 -0.989987502644281
8537 0.780093454583751 -0.00748780924413544 -0.368636176623123 1.07145994283266 0.599860434376875 0.32456939777431 0.205981829489426 0.323354941603483 NA NA NA 0.049278361171745 -0.0421191212532188 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.434192481537632 -0.158286613759644 -0.0140089925060402 0.692046096949297 0.562470722488344 0.774225317974249 0 0.0511811900520172 0.44134193532399 1.38535621877109 0.860592412281734 0.919422985745216 0.252549496353442 0.29595695834304 0.0169096194854072 0.15679985023394 0.580034507388751 0.293517103220167 0.260099678735816 -0.35621544319691
8975 0.860380231446373 -0.0721771713686147 -0.708708593222791 0.442087653812097 0.238626088681 -0.430537448627998 -0.843265402372417 -0.035583013679265 0.651401581928075 0.470035877215743 0.570539389989037 0.686080398076199 0.513869800743809 0.822238537841611 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.205428416174203 0.610792979133982 0.652040593984697 0.913876205253367 1.18119664666782 0.756580589751425 -0.138528204819299 0.44775353068732 -0.162394624595374 0.909721668287795 0.887962556750774 0.883325859482627 0.0207655160746351 0.131639135049529 -0.0429667953429834 -0.639428660530898 -0.416047899739618 0.195364258236129 0.557829323561277 0.938877447949287
[+] Show/hide bicluster #247 motif PSSM #1. bicluster 247 motif PSSM #1 Phaeodactylum tricornutum 23x4
POSITION A C G T
1 0 0.846154 0.153846 0
2 0.230769 0 0.461538 0.307692
3 0 0.461538 0.538462 0
4 0 0 1 0
5 0.076923 0.076923 0.153846 0.692308
6 0.076923 0.153846 0 0.769231
7 0.230769 0.769231 0 0
8 0.153846 0 0.846154 0
9 0.615385 0.076923 0.307692 0
10 0.076923 0.923077 0 0
11 1 0 0 0
12 0.153846 0.153846 0.384615 0.307692
13 0 0.846154 0.153846 0
14 0.307692 0 0.692308 0
15 0.076923 0.230769 0.538462 0.153846
16 0.153846 0.769231 0.076923 0
17 0.461538 0.076923 0.076923 0.384615
18 0.692308 0.230769 0 0.076923
19 0 0.769231 0.076923 0.153846
20 0.461538 0.076923 0.230769 0.230769
21 0.538462 0.384615 0.076923 0
22 0 0.769231 0.230769 0
23 0 0.076923 0.923077 0 [+] Show/hide bicluster #247 motif PSSM #2. bicluster 247 motif PSSM #2 Phaeodactylum tricornutum 24x4
POSITION A C G T
1 0 0.333333 0.666667 0
2 0 0.333333 0 0.666667
3 0 1 0 0
4 0 1 0 0
5 0 1 0 0
6 0.333333 0 0.666667 0
7 1 0 0 0
8 0.333333 0.333333 0 0.333333
9 0 0.333333 0 0.666667
10 0 0 1 0
11 0 0 1 0
12 1 0 0 0
13 0.333333 0 0 0.666667
14 0 0 0 1
15 0 1 0 0
16 0.833333 0 0.166667 0
17 0.5 0.166667 0.333333 0
18 0 0 1 0
19 0 0.666667 0.333333 0
20 0 1 0 0
21 0 0 0.666667 0.333333
22 0 0.666667 0.333333 0
23 0.5 0.5 0 0
24 0 0 1 0 |