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[+] Show/hide bicluster #249 rows and columns.
bicluster 249
Phaeodactylum tricornutum
31x82
[+] Show/hide bicluster #249 rows (genes).
bicluster 249 genes
Phaeodactylum tricornutum
31
[+] Show/hide bicluster #249 rows (short gene names).
bicluster 249 short names
Phaeodactylum tricornutum
31
short_name
[+] Show/hide bicluster #249 rows (long gene names).
bicluster 249 long names
Phaeodactylum tricornutum
31
long_name
[+] Show/hide bicluster #249 rows (NCBI RefSeq gene IDs).
bicluster 249 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #249 gene upstream sequences.
bicluster 249 upstream sequences
Phaeodactylum tricornutum
30
upstream
[+] Show/hide bicluster #249 columns (arrays; conditions).
bicluster 249 arrays
Phaeodactylum tricornutum
82
[+] Show/hide bicluster #249 ratios.
bicluster 249 ratios
Phaeodactylum tricornutum
31x82
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE12015_Si_free_22v19_2 GSE12015_Si_free_23v20_1 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_2 GSE17237_highlight_12hr_3 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_1 GSE17237_highlight_30min_2 GSE17237_highlight_3hr_1 GSE17237_highlight_3hr_2 GSE17237_highlight_3hr_3 GSE17237_highlight_48hr_1 GSE17237_highlight_48hr_2 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_1 GSE17237_highlight_6hr_2 GSE17237_highlight_6hr_3 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_2 GSE31131_Cadmium_1.2mg_3 GSE34988_Cadmium_4 GSE34988_Cadmium_5 GSE34988_Control_1 GSE34988_Control_2 GSE34988_Control_3 GSE34988_Control_4 GSE34988_Control_6 GSE34988_Copper_1 GSE34988_Copper_2 GSE34988_Dispersant_1 GSE34988_Dispersed_oil_1 GSE34988_Oil_1 GSE34988_Salinity_15ppt_1 GSE34988_Salinity_15ppt_4 GSE34988_Salinity_15ppt_5 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_0.5h_1 GSE42039_light_0.5h_2 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42039_light_24h_3 GSE42039_light_6h_1 GSE42039_light_6h_2 GSE42039_light_6h_3 GSE42514_dark_8hr_light_3hr_1 GSE42514_light_0.5hr_1 GSE42514_light_15.5hr_1 GSE42514_light_16hr_dark_30min_2 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_16hr_dark_7.5hr_1 GSE55959_BlueLight_0.5h_rep1 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_0.5h_rep3 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_0.5h_rep3 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_6h_rep1 GSE55959_GreenLight_6h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_0.5h_rep1 GSE55959_RedLight_0.5h_rep2 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
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19835 0.777479534593352 1.01231570308488 0.51946718834536 0.536258092638309 0.773932160446955 1.57096327840788 0.573545724749144 1.23741551200259 0.189322536204516 0.734624889988771 0.726026055057902 1.17653311198602 0.962203130976769 -0.0766761317050666 0.680546353584986 0.936593454555875 0.296536007489143 0.0649776127088864 0.0536260154404137 1.38527479625665 -0.0628815761077747 0.810094092495333 0.885047743292619 0.431236898576156 0.638829233623349 0.776048760354305 0.600815572270552 0.795895136245352 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.0843414446709006 0.067057785079971 0 -2.49683692469013 -2.59331321540284 0.182561237114601 -0.000780923045480164 0.793181703532027 -0.563659955284982 -0.633742958841242 -1.08195111301122 -0.325894867703867 0.0478804767923553 0.292950519449586 -0.146145082421849 0.28715537942995 1.00571180606718 -1.80739416722462 -2.02985595848622 -2.12754514781803 0.146547158898991 -0.65653456522895 -0.8315619770585 -1.09436220313382 -1.68528851423107 -1.81461694112864 -1.56351493257068 -0.0996679402432764 -0.794343946972961 -0.731104515850688 -0.649208068446569 -0.873514154898354 -0.819654519629791 -1.10149500668099 -0.526052195111361 -0.477026744748931 -1.39557121529808 -1.44657323357546 -1.54217359886543
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45777 0.248583950062052 0.418194417421725 0.0447842861322396 0.138804576700122 0.207182969840399 0.272423791920438 0.208397398593568 0.861760067798207 0.255627458761697 0.297298213112536 0.190844273323248 0.600959712367956 0.365446897588358 -0.883949212509691 0.307269171768499 0.472098493670317 0.42042472829173 0.25598537691329 0.405189167570162 0.408126411306748 -0.415984584455915 0.0933409583547829 0.22438440936475 0.398179491929623 0.321545832367514 -0.316520732746631 0 0.118841291140339 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.917430128118976 -0.945339650408239 -0.857320634603001 -1.66144973608352 -1.98509517873415 -1.18313677664454 -1.20820791390987 -0.133489403106541 -0.751071348224456 -0.661142098891457 -0.598801836148797 1.95768410178114 0.875942374412605 0.373644689468758 0.608888756347507 0.211157289558297 0.0805384574157393 -1.87481999774337 -2.09984205973844 -1.89512481307823 -1.07883574113331 -0.911089239459328 -1.18892062305851 -0.772355582395964 -2.16898180463425 -2.0593290055081 -1.63502863594938 -1.03384627561217 -1.07427724181191 -1.32587855845294 -1.22819678922133 -1.55103189374642 -1.79948268280047 -1.72828897992888 -1.07676202460804 -1.1234681097217 -1.13806230698604 -1.05127707549162 -1.37941142169306
45987 0.322103665707823 0.401382676052931 0.539870061212741 1.52901788226965 0.460256540275459 2.44456333773063 1.27239139127194 0.985816166956939 0.476065510861577 0.763804832037339 0.845542495234923 1.44979573872521 0.646923486026012 0.484324577382339 1.2324775874138 1.43378940688971 0.943212897937728 0.22250982710002 0.408999482236721 1.77653481356599 -0.142304079618428 1.21666861682768 0.547256055087931 -0.167736919941376 0.68271277428265 0.429511671748797 0.581188809558006 0.635121952334133 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.356150784419104 -0.377754112013384 -0.530119225268505 -2.05671306975726 -1.93122983011891 -0.498759174062382 -0.376986533982882 0.458597394892216 -0.68553709754071 -0.246383178590691 -0.41577170329788 0.923536521083486 1.0258799042282 0.741012314531262 0.319477042861603 0.580488579145938 0.655763623929065 -2.35106501711827 -2.17589049558515 -1.97885346815442 -0.663197710015697 -0.838551829972657 -1.47544545376305 -0.844444193920032 -2.33799838993552 -1.7240836876818 -1.0701015801153 -1.02979972180981 -1.34390829096766 -1.10907751119299 -0.624282841130718 -1.15348843809525 -1.00279253202305 -1.39212559984922 -0.620657700374107 -0.667926112730915 -0.750655697429051 -0.736065254854008 -0.720441436022571
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46460 -0.0847193451754537 0.0606569118518706 0.111120252870348 -0.0781826429709877 0.51090495969549 1.27550824591364 0.840718191443146 1.00968148470507 0.486936180052154 0.64425891402836 0.486847280902173 0.944842628198526 0.491284394358565 -0.210239715586492 0.811093857052506 1.05321069202505 0.643131986568311 0.136069537844354 0.479479110177299 1.03767687290635 -0.346046240586478 0.660435944643973 0.252323479210341 0.0367064349747071 0.323115964084708 0.146379224561238 0.301683424896705 0.156908544472192 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.21069279283637 -0.318519690236648 -0.264441497542654 -2.29021160674914 -2.20255111111276 -0.170152626541041 -0.157860838231519 0.130000635682385 -0.284784487166976 -0.219308610244872 -0.368680341407529 0.837488729785943 1.16759578992781 1.6781189168743 1.58010837648967 1.20037991658813 0.253786177760838 -2.42851353942455 -3.03713080401056 -2.52120435282258 -0.183685505730742 -0.52714317441113 -1.13227342758936 -0.496613582721982 -2.06043229167977 -1.77836656296741 -1.6997293344715 -0.371884170224156 -0.839009745203964 -0.465761283150316 -0.358591865335548 -1.0293683794982 -1.15661544219422 -1.28973090317732 -0.359738465535505 -0.289812601358098 -0.584263333392107 -0.463336305368052 -0.432092075698431
48464 -0.00467800842267009 0.769533155305068 0.462439898593523 0.178457422888776 0.503759173726889 2.52825658665543 1.56213139646715 0.987586875737694 0.80872343727902 0.926465863241685 1.13290816703514 1.21088254149868 0.168544298490254 -0.312898791116668 0.0948139038115959 1.27475583791459 1.08766005913062 0.472573625901655 0.542648315221056 1.5719149604267 -0.433221920958425 1.37895394555388 0.225277764228457 0.337021892029812 0.402421900645565 0.205966255553837 0.2508571968428 0.363119566400065 -0.558677807025975 -1.55285458306963 0.165795552387385 0.335266800259271 0.272457871562956 0.209958550296195 0.0763551210939352 0.111214843294084 0.161683878322131 -0.468351868650082 0.0182427401020601 -0.110483847890185 0.466170715158263 0.252330457074365 0.459138006452156 -1.0527362747348 -0.86009624016164 -0.850164194801767 -2.95898566106468 -2.61554813143475 -0.571978838943442 -0.231416199695268 0.30330761948216 -1.05959313813817 -0.675643495209638 -0.450149035247066 -0.348243935580923 0.0169342754159118 1.00650902560231 0.272828848481606 0.262325364565404 0.526075883165987 -2.62636569316849 -3.27533471121779 -3.01802200412853 -0.0972134891950782 -0.802212569936384 -1.04950292994025 -0.789826597779793 -2.66524260429986 -1.99840185423727 -1.67174690724526 -0.861001578754757 -0.941242771130308 -0.917707007055243 -0.536772486578955 -1.56923082327255 -1.28920271179678 -1.77564524287806 -0.542275502103152 -0.675850048997616 -0.952107495156454 -1.44051498915257 -0.917590596322371
49038 -0.251773165955139 -0.313983085046017 -0.34403258688233 -0.197261879566125 -0.127353327773382 1.30462339764734 1.14154028100785 0.428501612165756 0.374280887075491 0.4978265579311 0.535600768483268 0.305669927407497 0.36538524115998 -0.0175435077158421 0.24884656777802 0.654021881732329 0.473890018803059 0.0401540192397817 0.262458247080899 0.606988202783741 -0.335333131929222 0.453086326498696 -0.0782621271494721 -0.132968362785936 0.0690301004465357 -0.182382409297343 -0.185234628541889 -0.209225803127814 0.245815423720955 -0.206033316631519 -0.0944871928978541 0.0400192187680784 -0.453894490570051 -0.147646190860201 -0.114016044399673 0.349224855101729 0.363595098068731 -0.164444247318334 0.166692788213283 0.259131326522287 0.176071274987845 0.223485104968962 0.227631222236275 -1.17686141225989 -1.15865409078474 -1.17109326352039 -2.56802018235414 -2.50804789780508 -0.344633082361184 -0.340277368722711 -0.12844160102627 -0.711389149821726 -0.587500098966349 -0.599568768306812 0.632865908650121 1.58997497224802 1.24829997832103 1.04541283424896 0.791925167329514 -0.0802063681488505 -2.36561268137692 -2.11213165217501 -2.26824545818874 -0.36381209163268 -0.891507135112304 -0.750132920290281 -0.674016178539704 -2.19030867158352 -2.20810370876809 -1.54200527444216 -0.540230054409276 -0.778756807604532 -0.751995834294055 -0.743229056238302 -0.846875532010739 -0.825750863781845 -1.32374484374702 -0.630359348679108 -0.375435289725409 -0.640067791842243 -0.690314124197716 -0.709240799978508
54323 0.364719202059078 0.3385791500151 0.487914900131469 0.513601656475262 0.323972955231374 0.458118262772668 0.382053229634137 0.469171122928836 0.132609138779557 0.389066217777882 0.0828271976615071 0.865547993026917 -0.062549770006583 -0.643700040737686 -0.208050134837501 0.0743707145436189 0.397457224850188 0.184325141551728 0.424173969757179 0.69722670800115 -0.189022795991308 0.337665003686395 0.344693605348701 0.739060864509298 0.624230990414758 -0.068170636688872 0 0.246031277894079 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.233861566917269 0.240536620754579 0.293103624083647 -2.34867641920639 -1.84077839341646 -1.05299107827662 -0.894285451749577 -0.0262563269242723 -0.625013209226222 -0.133354088508235 -0.863532586728826 1.4479913907085 0.598327466987357 0.417804927661535 0.594737422214608 0.426182391304783 0.345959527152471 -1.94541506733356 -2.25265441209235 -1.60399094467317 -0.896481954747526 -0.594210204060637 -1.73595034440494 -0.811779062853906 -2.35091721273427 -2.41265137343787 -1.79322807409765 -1.3537737509872 -1.20964301172594 -1.14623750089691 -0.879972104401676 -1.97174608125008 -1.73889089379252 -1.81330065448372 -0.603324996993102 -1.20463637126961 -0.447788474324197 -0.863570960202797 -1.06286068441385
54642 0.206163442745815 0.338422827020563 0.0153400514511038 -0.00483510886199337 0.11285332629774 1.24367946816363 0.325084804369126 0.992806953881469 1.18208358288551 1.36268769506052 0.612805007278684 1.65943908431578 -0.633355801043748 0.0526024517071546 0.954642275622527 0.875729377742326 1.3618470633808 0.920834871570094 1.500385966303 1.35473251726484 -0.207393718405489 1.35342953816128 -0.151673848568553 0.289195435856606 0.21883176215908 -0.472677461783524 0.216220199740774 -0.414458113752243 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.767172633426487 -0.873491108982462 -0.85376711414145 -1.76875634720058 -1.88177161315485 -0.0698094389378421 -0.133477304789895 0.337293594254018 -0.373405584111864 -0.1477085390152 -0.776717227799461 0.407064874797471 0.566006918992926 0.599298608088894 0.720876845475601 0.681335333099778 0.315889446696682 -1.69552723381312 -2.21799884813264 -1.19268344918932 -0.511010309387569 -0.796258205948558 -1.69878683259237 -0.508545794158303 -2.07045520924546 -2.33661318084206 -1.72597711320896 -0.788699610942023 -1.58416569495263 -0.870442155594977 -0.486999158220079 -1.52149261463795 -1.80597039586373 -1.35040935356907 -0.424410635562306 -0.853342632972507 -0.672345125685606 -0.800266995812101 -0.685468287627349
[+] Show/hide bicluster #249 motif PSSM #1. bicluster 249 motif PSSM #1 Phaeodactylum tricornutum 24x4
POSITION A C G T
1 0.285714 0 0 0.714286
2 0 0 0 1
3 0.285714 0.428571 0.142857 0.142857
4 0.571429 0.428571 0 0
5 0.571429 0 0 0.428571
6 0.285714 0 0.428571 0.285714
7 0.142857 0 0.285714 0.571429
8 0.285714 0 0.571429 0.142857
9 0.285714 0.285714 0 0.428571
10 0 0.142857 0 0.857143
11 0.285714 0.428571 0 0.285714
12 0 0 1 0
13 0.857143 0 0.142857 0
14 0.285714 0 0 0.714286
15 0 0.142857 0.142857 0.714286
16 0.142857 0.142857 0.428571 0.285714
17 0 0 0 1
18 0 0 1 0
19 0 0 0 1
20 0.142857 0.857143 0 0
21 0 0.285714 0.714286 0
22 0.714286 0 0.285714 0
23 0 0 0.142857 0.857143
24 0 1 0 0 [+] Show/hide bicluster #249 motif PSSM #2. bicluster 249 motif PSSM #2 Phaeodactylum tricornutum 14x4
POSITION A C G T
1 0 0 1 0
2 0 0 1 0
3 1 0 0 0
4 0.25 0 0.25 0.5
5 0 1 0 0
6 0 0 1 0
7 0 0.25 0.25 0.5
8 0 1 0 0
9 0.75 0 0.25 0
10 0.25 0.25 0 0.5
11 0 1 0 0
12 0 0 1 0
13 0 1 0 0
14 0 1 0 0 |