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[+] Show/hide bicluster #256 rows and columns.
bicluster 256
Phaeodactylum tricornutum
27x81
[+] Show/hide bicluster #256 rows (genes).
bicluster 256 genes
Phaeodactylum tricornutum
27
[+] Show/hide bicluster #256 rows (short gene names).
bicluster 256 short names
Phaeodactylum tricornutum
27
short_name
[+] Show/hide bicluster #256 rows (long gene names).
bicluster 256 long names
Phaeodactylum tricornutum
27
long_name
[+] Show/hide bicluster #256 rows (NCBI RefSeq gene IDs).
bicluster 256 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #256 gene upstream sequences.
bicluster 256 upstream sequences
Phaeodactylum tricornutum
27
upstream
[+] Show/hide bicluster #256 columns (arrays; conditions).
bicluster 256 arrays
Phaeodactylum tricornutum
81
[+] Show/hide bicluster #256 ratios.
bicluster 256 ratios
Phaeodactylum tricornutum
27x81
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_11v18_2 GSE12015_Si_free_23v20_1 GSE12015_Si_free_23v20_2 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_2 GSE17237_highlight_12hr_3 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_1 GSE17237_highlight_30min_2 GSE17237_highlight_30min_3 GSE17237_highlight_3hr_2 GSE17237_highlight_3hr_3 GSE17237_highlight_48hr_1 GSE17237_highlight_48hr_2 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_1 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE31131_Cadmium_1.2mg_2 GSE31131_Cadmium_1.2mg_3 GSE34988_Ammonia_1 GSE34988_Ammonia_2 GSE34988_Ammonia_3 GSE34988_Ammonia_4 GSE34988_Ammonia_5 GSE34988_Cadmium_3 GSE34988_Cadmium_4 GSE34988_Control_1 GSE34988_Control_3 GSE34988_Control_5 GSE34988_Control_6 GSE34988_Copper_4 GSE34988_Copper_5 GSE34988_Dispersed_oil_2 GSE34988_Mixture_1 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Mixture_5 GSE34988_Salinity_15ppt_2 GSE34988_Simazine_2 GSE42039_light_0.5h_1 GSE42039_light_0.5h_2 GSE42039_light_0.5h_3 GSE42039_light_24h_3 GSE42039_light_6h_1 GSE42039_light_6h_2 GSE42039_light_6h_3 GSE42514_light_0.5hr_1 GSE42514_light_0.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_16hr_dark_7.5hr_1 GSE42514_light_16hr_dark_7.5hr_2 GSE42514_light_6hr_1 GSE55959_BlueLight_0.5h_rep1 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_0.5h_rep3 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_24h_rep3 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_0.5h_rep3 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_6h_rep1 GSE55959_GreenLight_6h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_0.5h_rep1 GSE55959_RedLight_0.5h_rep2 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
16074 0.160300974262232 0.396649172341116 0.204010995390885 0.127322155925643 1.67382458132194 1.44048112002484 1.22154364413444 1.19610545878418 1.41872033465576 1.11557170787954 0.728735403524424 -0.215510982248937 0.0549231802106927 0.686985789930223 1.0296147735151 1.13858097708564 0.528365525830837 1.19815747414735 1.00991560051981 0.370708452616201 0.127413763754356 0.152210694303629 0.0459534650964476 0.271175238036535 1.73073850818402 1.94233228174616 1.50621389699411 0.803041312230612 1.0623017275645 0.00574008582423705 -0.0255850018147636 -0.0531146713685872 -0.0103986171673464 -0.117727745913982 0.0027049383841662 0.222615575231914 0.586057888908726 0.490597369943238 1.18665124120579 1.15448925061734 1.20858414459819 1.15923694412187 0.155047787013951 -0.179556445000885 -1.85493540366322 -1.89556873368236 -1.45098621951007 0.0697348637788806 -0.994057872878023 -0.789564970335634 -0.467054665011265 -0.148844261316743 0.0434190888173255 0.0107043611202951 -0.0128002787696053 0.0497657393513361 -0.0961185789847862 -2.50493764930379 -1.95446898108068 -1.96149389811061 -2.20269393783656 -0.0659639278486554 -0.0574765742547431 -1.06463036173092 -0.804875220542634 -0.896802289411462 -1.05799572637938 -1.17742057104889 -0.582287302827262 -0.399802084136757 -0.885881378862331 -0.912436376395817 -1.10023714047924 -0.960478856842846 -0.629233612074125 -0.617330613113091 -0.414673071623946 -0.239571656197371 -1.05671870608373 -0.812490216518796 -0.801506691981437
17198 0.331050733719928 0.0921849306058722 0.522893739990589 0.185230039253442 2.67453686533966 1.61196672700961 0.983379485355127 0.981288471623155 1.20876875499087 1.61399771163923 1.50310394989195 0.625558512290271 1.0470028302118 0.653407013356992 1.43152925018607 0.81154617986889 0.503074131363618 0.441641848742839 1.80694437796878 0.717983320213523 0.508024031095165 0.683769233084757 0.0591914352249558 0.857363392240023 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.57840881836049 -1.01979920838803 -1.36401173430774 0.646376606764054 -1.1672686043554 -0.881513493546591 -1.24370653255922 1.00894074985026 0.523797367288171 0.193311580019193 0.484212259315301 0.867076304465224 0.0771619440350049 -1.02096353699231 -0.953138197526662 -1.36677625373662 -1.02428849536628 -0.247030785493627 0.580771312687638 -0.688836968903004 -1.06687556407339 -0.734606940894815 -0.735581643178985 -1.19715046767985 -0.751670456271653 -0.704170285822063 -1.19823009881152 -1.30605429241257 -1.16161570971473 -0.84985337755073 -0.765070285916006 -1.01450804856393 -0.278917703984116 -0.730574488700627 -0.964249998981481 -1.08994998454573 -1.02094087663312
17332 -0.139618244294238 0.548494399497087 0.0467324808313175 -0.236885768050651 2.61232553244631 1.28487251065919 1.16554823806908 1.57923740439891 1.14772530216265 1.46645744190231 1.42300813347481 0.205388718124869 0.623544635788363 0.53002616124858 1.72347034739305 0.929090573035612 1.31394888984812 1.06452536946343 1.65360771236878 0.0535978681877168 0.35875347621342 0.385956904702188 0.355678059685588 0.237663278677442 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.05127148864118 -0.535847716845436 -1.54903683537696 0.387276416183865 -1.1949302528622 -1.00922426134367 -2.38216821367296 0.945998173416485 0.72050895641857 0.191133897326071 0.142393208755545 0.230880090749327 0.127001440348218 -0.0311558797710998 -1.0501569037317 -1.51943257871772 -0.7174748566302 -1.20954596082172 0.0552061907087698 -1.19216070914204 -1.75594301713556 -1.30151216881327 -0.822730654965397 -1.31190883486221 -1.14194960455588 -1.21561044576087 -2.07612615754298 -1.51687644345901 -1.4752895835777 -0.904358893489845 -1.09964776504245 -1.007984275407 -1.16269710110652 -1.44035346631573 -0.705571765165881 -1.53943294833547 -1.59012421596326
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21116 0.539567894111495 0.390873397691367 -0.0180364674639847 0.0718298665375005 1.95584688161603 1.68956102397355 0.916544533433709 1.58757536669588 1.38748743267812 1.44320095066932 1.23306170178432 0.517909746708165 0.68861247223436 0.762284820666983 1.14728807552411 1.03708452095642 0.861881260550718 1.36393812226207 1.18122434615126 -0.0352229527055538 0.225681752165987 0.163046000093867 0.0469668474637563 0.0682604768054736 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.06271446475185 -0.986930286175849 -0.91119804669903 0.142798625423799 -1.10014600134147 -0.999684600369465 -1.12872422359819 0.76976317741151 0.750346736575169 0.229969045898899 0.304508728522627 0.117808781717413 0.0359564025706063 -0.608052847283421 -1.16993816258629 -1.31448482783118 -1.12679441472167 -0.696797763420119 -0.0102466931842839 -0.950685135455929 -1.0101120393736 -0.997502591885582 -1.38992620215757 -1.01287354501713 -0.774599354232394 -0.834468198033758 -0.933825555170132 -1.06714750492579 -1.28139981498802 -0.806822562031749 -0.927628657812908 -1.03283460560458 -0.750035456279899 -0.717309266386061 -0.970739154574573 -0.879824477206847 -1.23563074333231
25420 0 0.194748665050269 0.122347073868558 -0.0212945856416794 2.84392675813189 1.47821980258842 1.63517638573897 0.980309801114668 0.853456018575762 1.37537469742479 1.72712640653974 0.821878083940573 0.32008472439435 0.926306731927369 1.51121092336164 0.778530051059801 0.991688853333013 0.950183770045957 2.15474104493889 0.232997612605569 0.432012938269861 0.312577415019947 0.236095006880722 1.17656844587407 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.980117264155158 -0.878906227955793 -0.903561463015131 0.719305048324266 -0.538125886291029 -0.753427690113942 -0.860180293174741 1.16360010802686 0.963506504037568 0.374947048789084 0.317210593566242 0.517820703267482 0.0203515520404155 -0.358473430592355 -0.901574904383316 -1.17262597608704 -1.19272899830894 -0.0285674720849945 0.39885685306812 -1.04368104783244 -1.5260086335931 -1.07585120342038 -0.93878914556103 -0.690828064312425 -0.449552231485231 -0.0634268186686028 -0.999193148996783 -1.12109150828374 -1.14099211217003 -1.36204581316985 -1.26921315305839 -1.33729664011591 -0.466102440042218 -0.582466703849284 -1.59309569392915 -1.89381889644266 -1.8136948631869
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[+] Show/hide bicluster #256 motif PSSM #1. bicluster 256 motif PSSM #1 Phaeodactylum tricornutum 21x4
POSITION A C G T
1 0 0.9 0.1 0
2 0.9 0.1 0 0
3 0.5 0 0.5 0
4 0 0.1 0.7 0.2
5 0.5 0.1 0.4 0
6 0.6 0.4 0 0
7 1 0 0 0
8 0.8 0.2 0 0
9 0.2 0.7 0.1 0
10 0.3 0 0.4 0.3
11 1 0 0 0
12 0 0.6 0 0.4
13 0.2 0.2 0.6 0
14 0.8 0 0.2 0
15 0.8 0.1 0.1 0
16 0.8 0.2 0 0
17 0.5 0 0 0.5
18 0.9 0.1 0 0
19 0 0.5 0.3 0.2
20 0 0 0.6 0.4
21 0.7 0 0.3 0 [+] Show/hide bicluster #256 motif PSSM #2. bicluster 256 motif PSSM #2 Phaeodactylum tricornutum 11x4
POSITION A C G T
1 0.470588 0 0.529412 0
2 0 0.235294 0.764706 0
3 0.117647 0.058824 0 0.823529
4 0 0.117647 0.882353 0
5 0.411765 0.235294 0.235294 0.117647
6 0 1 0 0
7 0 0 0.647059 0.352941
8 1 0 0 0
9 0.117647 0.882353 0 0
10 0 0 1 0
11 0.588235 0.058824 0.352941 0 |