******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/111/111.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 17326 1.0000 500 9046 1.0000 500 17531 1.0000 500 54027 1.0000 500 17766 1.0000 500 43157 1.0000 500 9241 1.0000 500 13877 1.0000 500 14442 1.0000 500 14386 1.0000 500 22006 1.0000 500 29266 1.0000 500 38559 1.0000 500 6062 1.0000 500 22395 1.0000 500 22680 1.0000 500 25168 1.0000 500 50705 1.0000 500 25172 1.0000 500 18049 1.0000 500 9799 1.0000 500 30031 1.0000 500 22956 1.0000 500 22993 1.0000 500 23257 1.0000 500 55057 1.0000 500 30643 1.0000 500 30648 1.0000 500 30690 1.0000 500 8324 1.0000 500 16302 1.0000 500 44056 1.0000 500 25893 1.0000 500 44585 1.0000 500 11006 1.0000 500 26293 1.0000 500 26422 1.0000 500 12379 1.0000 500 20331 1.0000 500 12583 1.0000 500 46454 1.0000 500 44202 1.0000 500 46433 1.0000 500 44507 1.0000 500 46529 1.0000 500 43786 1.0000 500 49850 1.0000 500 34932 1.0000 500 43689 1.0000 500 34590 1.0000 500 54499 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/111/111.seqs.fa -oc motifs/111 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 51 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 25500 N= 51 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.247 C 0.252 G 0.228 T 0.273 Background letter frequencies (from dataset with add-one prior applied): A 0.247 C 0.252 G 0.228 T 0.273 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 12 sites = 20 llr = 217 E-value = 3.8e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A a1:2a17::394 pos.-specific C :6:2:a:::313 probability G 1:16:::a:5:1 matrix T :4a:::3:a::3 bits 2.1 * 1.9 * ** 1.7 * ** ** 1.5 * * ** ** * Relative 1.3 * * ** ** * Entropy 1.1 * * ***** * (15.6 bits) 0.9 * * ***** * 0.6 ********* * 0.4 *********** 0.2 *********** 0.0 ------------ Multilevel ACTGACAGTGAA consensus T A T C T sequence C A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 54027 37 1.09e-07 GAGCTTTGTT ACTGACAGTGAT AGTCTTGGTT 44202 285 1.61e-07 GGTCGTTGTG ACTGACAGTGAC TACAATGCAA 25172 289 6.89e-07 GTCACAGTCA ACTGACAGTAAT CTTTGGCCCG 17531 109 1.60e-06 AGTATTTATT ATTGACTGTGAA TGGGCTACCG 26422 321 2.13e-06 CATACGAAAA ACTCACAGTCAA CGTCCGTAGC 38559 58 2.44e-06 ACAAACTAAA ATTGACTGTGAT AAAAATCTAG 23257 488 3.38e-06 CCTGCCTGCA ACTCACAGTCAC G 30643 48 3.94e-06 TTTCCCCCAT AATGACAGTCAA CGTGGTTTTA 29266 48 3.94e-06 TTTCCCCCAT AATGACAGTCAA CGTTGTTTTA 43157 3 3.94e-06 GT ACTGACTGTGAG TAGATACATG 17766 226 5.54e-06 GGTAGATGGC ACTCACTGTGAC CGTGGCGGTA 43689 267 6.04e-06 AGAAACTTTA ATTCACAGTCAC GAGTTGACGT 44585 401 6.50e-06 CTTCATGTGT ATTAACAGTAAT GTGAAGAACA 46529 437 6.92e-06 CATGATGTCG ATTGACAGTGCA CCATATCCGC 25168 113 6.92e-06 TGAGTTTCTA ATTAACAGTAAC TTCTTTACTT 46433 161 8.72e-06 CGTTGTATTG ACGGACAGTGAT ACTGTGCACG 25893 293 1.21e-05 ACTGACGGAC ATTGAAAGTGAA CAGTAAGCCG 16302 71 1.65e-05 GGTTCAGCGT ACTAACTGTAAG TACGCAGCAG 43786 124 2.03e-05 CAATCTGCAA GCTGACTGTCAA ATCGATTGTG 14386 190 2.03e-05 GCCCTATCCT ACTAACAGTACT AGTAGTGGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 54027 1.1e-07 36_[+1]_452 44202 1.6e-07 284_[+1]_204 25172 6.9e-07 288_[+1]_200 17531 1.6e-06 108_[+1]_380 26422 2.1e-06 320_[+1]_168 38559 2.4e-06 57_[+1]_431 23257 3.4e-06 487_[+1]_1 30643 3.9e-06 47_[+1]_441 29266 3.9e-06 47_[+1]_441 43157 3.9e-06 2_[+1]_486 17766 5.5e-06 225_[+1]_263 43689 6e-06 266_[+1]_222 44585 6.5e-06 400_[+1]_88 46529 6.9e-06 436_[+1]_52 25168 6.9e-06 112_[+1]_376 46433 8.7e-06 160_[+1]_328 25893 1.2e-05 292_[+1]_196 16302 1.6e-05 70_[+1]_418 43786 2e-05 123_[+1]_365 14386 2e-05 189_[+1]_299 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=12 seqs=20 54027 ( 37) ACTGACAGTGAT 1 44202 ( 285) ACTGACAGTGAC 1 25172 ( 289) ACTGACAGTAAT 1 17531 ( 109) ATTGACTGTGAA 1 26422 ( 321) ACTCACAGTCAA 1 38559 ( 58) ATTGACTGTGAT 1 23257 ( 488) ACTCACAGTCAC 1 30643 ( 48) AATGACAGTCAA 1 29266 ( 48) AATGACAGTCAA 1 43157 ( 3) ACTGACTGTGAG 1 17766 ( 226) ACTCACTGTGAC 1 43689 ( 267) ATTCACAGTCAC 1 44585 ( 401) ATTAACAGTAAT 1 46529 ( 437) ATTGACAGTGCA 1 25168 ( 113) ATTAACAGTAAC 1 46433 ( 161) ACGGACAGTGAT 1 25893 ( 293) ATTGAAAGTGAA 1 16302 ( 71) ACTAACTGTAAG 1 43786 ( 124) GCTGACTGTCAA 1 14386 ( 190) ACTAACAGTACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 24939 bayes= 11.227 E= 3.8e-005 194 -1097 -219 -1097 -131 113 -1097 36 -1097 -1097 -219 180 -31 -33 140 -1097 202 -1097 -1097 -1097 -230 192 -1097 -1097 150 -1097 -1097 14 -1097 -1097 213 -1097 -1097 -1097 -1097 187 2 25 98 -1097 186 -133 -1097 -1097 50 -1 -119 14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 20 E= 3.8e-005 0.950000 0.000000 0.050000 0.000000 0.100000 0.550000 0.000000 0.350000 0.000000 0.000000 0.050000 0.950000 0.200000 0.200000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 0.050000 0.950000 0.000000 0.000000 0.700000 0.000000 0.000000 0.300000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.300000 0.450000 0.000000 0.900000 0.100000 0.000000 0.000000 0.350000 0.250000 0.100000 0.300000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- A[CT]T[GAC]AC[AT]GT[GCA]A[ATC] -------------------------------------------------------------------------------- Time 23.79 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 14 sites = 12 llr = 156 E-value = 4.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :::a:::::136:: pos.-specific C :::::a:::23:28 probability G 4a2:1::1:431:2 matrix T 6:8:9:a9a3238: bits 2.1 * 1.9 * * ** * 1.7 * * ** * 1.5 * ****** Relative 1.3 ******** ** Entropy 1.1 ********* ** (18.7 bits) 0.9 ********* ** 0.6 ********* *** 0.4 ********* *** 0.2 ********** *** 0.0 -------------- Multilevel TGTATCTTTGGATC consensus G TAT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------- 30648 370 9.52e-09 TTTCGTAGAA GGTATCTTTGGATC TTGCAATCGT 9799 381 9.52e-09 GCTCAACCGG GGTATCTTTGGATC GTGACCCGTG 34590 313 1.07e-07 CGTGTCGGTC GGTATCTTTGTATC GGCGTCGTGT 38559 247 1.80e-07 ATCGCTCAGT TGTATCTTTTCTTC ATGAAGTGGA 25893 365 2.07e-07 AAATTGAAGG TGTATCTTTGGACC TCGAACGCAC 26293 291 3.91e-07 TGGTTGAGGG TGTATCTTTCCTTC TCCCGTAGTC 30643 17 4.75e-07 GATCGTCTGT TGGATCTTTTAATC AGCTGGGTTT 29266 17 4.75e-07 GATCGTCTGT TGGATCTTTTAATC AGCTGGGTTT 22395 325 2.07e-06 TCCGTCGGAG GGTATCTTTGGTCG ACACGGCACA 46454 410 2.64e-06 GAGCTCCCTT TGTATCTGTCATTC CCAGTCCTTC 50705 116 3.05e-06 AATTGACTTG TGTAGCTTTTCATG AGCACTTGAT 8324 202 3.18e-06 ACCAAGCCTG GGTATCTTTATGTC GTGCCGACGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 30648 9.5e-09 369_[+2]_117 9799 9.5e-09 380_[+2]_106 34590 1.1e-07 312_[+2]_174 38559 1.8e-07 246_[+2]_240 25893 2.1e-07 364_[+2]_122 26293 3.9e-07 290_[+2]_196 30643 4.8e-07 16_[+2]_470 29266 4.8e-07 16_[+2]_470 22395 2.1e-06 324_[+2]_162 46454 2.6e-06 409_[+2]_77 50705 3e-06 115_[+2]_371 8324 3.2e-06 201_[+2]_285 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=14 seqs=12 30648 ( 370) GGTATCTTTGGATC 1 9799 ( 381) GGTATCTTTGGATC 1 34590 ( 313) GGTATCTTTGTATC 1 38559 ( 247) TGTATCTTTTCTTC 1 25893 ( 365) TGTATCTTTGGACC 1 26293 ( 291) TGTATCTTTCCTTC 1 30643 ( 17) TGGATCTTTTAATC 1 29266 ( 17) TGGATCTTTTAATC 1 22395 ( 325) GGTATCTTTGGTCG 1 46454 ( 410) TGTATCTGTCATTC 1 50705 ( 116) TGTAGCTTTTCATG 1 8324 ( 202) GGTATCTTTATGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 24837 bayes= 11.4622 E= 4.5e-002 -1023 -1023 87 109 -1023 -1023 213 -1023 -1023 -1023 -45 161 201 -1023 -1023 -1023 -1023 -1023 -145 175 -1023 199 -1023 -1023 -1023 -1023 -1023 187 -1023 -1023 -145 175 -1023 -1023 -1023 187 -157 -59 87 29 2 -1 55 -71 124 -1023 -145 29 -1023 -59 -1023 161 -1023 173 -45 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 12 E= 4.5e-002 0.000000 0.000000 0.416667 0.583333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.833333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.083333 0.916667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 0.000000 1.000000 0.083333 0.166667 0.416667 0.333333 0.250000 0.250000 0.333333 0.166667 0.583333 0.000000 0.083333 0.333333 0.000000 0.166667 0.000000 0.833333 0.000000 0.833333 0.166667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [TG]GTATCTTT[GT][GAC][AT]TC -------------------------------------------------------------------------------- Time 49.39 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 12 sites = 32 llr = 294 E-value = 4.5e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 353882:::8a3 pos.-specific C 537::2::4::4 probability G 12:325::62:3 matrix T 11:::1aa:::: bits 2.1 1.9 ** * 1.7 ** * 1.5 * ** * Relative 1.3 ** ** ** Entropy 1.1 *** ***** (13.3 bits) 0.9 *** ***** 0.6 *** ***** 0.4 * ********** 0.2 ************ 0.0 ------------ Multilevel CACAAGTTGAAC consensus ACAG C CG A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 8324 182 2.23e-07 GAACTGTTCG CCCAAGTTGAAC CAAGCCTGGG 25172 68 3.41e-07 TCACGGTGTA CACAAGTTCAAC ATTCAACGCT 30031 396 1.14e-06 GCTCCGATCC AACAAGTTCAAC GTTCACCGTG 46529 348 1.52e-06 CGCGGGAATC CAAAAGTTGAAG AAGTGATCCT 30643 352 2.02e-06 ACTTTGGGAC CACGAGTTGAAG AAATCCTCCT 29266 352 2.02e-06 ACTTTGGGAC CACGAGTTGAAG AAATCCTCCT 22956 78 3.28e-06 GACGGACAGA CACAGGTTGAAC TGCACTGCTG 22395 299 3.62e-06 TCACTATCAC CCAAAGTTGAAG CAAATCCGTC 14386 145 3.62e-06 TCTCGTTTCA CCCAAGTTGGAC TTGTCGTGAA 44202 166 4.68e-06 GCGTTAACAG CAAAAGTTCAAA GCCTAACTTT 16302 252 5.58e-06 AGTCTCCCCA CAAAACTTGAAC CGAAATCCTG 23257 101 5.58e-06 TGGTGAAACG CACAAATTCAAA CGACCGAGAC 20331 242 1.44e-05 TTTAGAGAAT GGCAAGTTGAAA TTCTATTTTA 46454 438 2.02e-05 TCCTTCCCAT CGAAACTTGAAC GGTCAACAAC 30690 148 2.22e-05 AACGGCCGAT CCAAACTTCAAC ACACATCGAA 50705 75 2.22e-05 AACACAATGA AACGAATTGAAA CTTCTACTGA 17531 386 2.48e-05 CACCGTCGGT ACAAAATTGAAC GGGGATGCTG 26293 335 3.03e-05 GCCTGTACGC GACAGGTTGAAG ATCCAAGAGA 22006 390 3.03e-05 AAAGACATTC CTCAAGTTGGAA ACAAGCTGGC 22680 22 3.33e-05 CGAAAACATT GCCAAGTTGGAG AGGGTCACAG 25893 352 4.47e-05 TTTCGCGTCC ATCAAATTGAAG GTGTATCTTT 25168 264 5.19e-05 GATTCGGCTT CGCAATTTCAAC ATTACGGTCA 38559 213 5.64e-05 ACAACTGCTC TCCAACTTGAAA AGTATAGTGA 54027 165 5.64e-05 AATTGCAAGT CACGAATTCGAC GGTCCACAAG 12379 202 7.16e-05 GTATTTCAAA ACCGAGTTCGAA CCGTACTCCG 55057 356 8.74e-05 TTGGATCCAC GACAGCTTCAAC GTACATTTCT 22993 430 9.95e-05 TACCGACACT ACCGGCTTGAAC TTGTACGGAT 44056 149 1.25e-04 ATTGGAACAT AGAAATTTGAAA ATATAGGTAA 43157 208 1.33e-04 AAGCTCGAAG ATCGACTTCAAG AAGCTTGTTC 49850 164 1.40e-04 TATGCGCGCC AGCAGGTTCGAA ACGCAGCGTT 17326 122 1.48e-04 TGGATGGTAG CAAAAGTTCACA AGCTTCCAAG 12583 375 1.87e-04 AACACTCTCA TACGAATTGGAG CTCACTTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 8324 2.2e-07 181_[+3]_307 25172 3.4e-07 67_[+3]_421 30031 1.1e-06 395_[+3]_93 46529 1.5e-06 347_[+3]_141 30643 2e-06 351_[+3]_137 29266 2e-06 351_[+3]_137 22956 3.3e-06 77_[+3]_411 22395 3.6e-06 298_[+3]_190 14386 3.6e-06 144_[+3]_344 44202 4.7e-06 165_[+3]_323 16302 5.6e-06 251_[+3]_237 23257 5.6e-06 100_[+3]_388 20331 1.4e-05 241_[+3]_247 46454 2e-05 437_[+3]_51 30690 2.2e-05 147_[+3]_341 50705 2.2e-05 74_[+3]_414 17531 2.5e-05 385_[+3]_103 26293 3e-05 334_[+3]_154 22006 3e-05 389_[+3]_99 22680 3.3e-05 21_[+3]_467 25893 4.5e-05 351_[+3]_137 25168 5.2e-05 263_[+3]_225 38559 5.6e-05 212_[+3]_276 54027 5.6e-05 164_[+3]_324 12379 7.2e-05 201_[+3]_287 55057 8.7e-05 355_[+3]_133 22993 0.0001 429_[+3]_59 44056 0.00013 148_[+3]_340 43157 0.00013 207_[+3]_281 49850 0.00014 163_[+3]_325 17326 0.00015 121_[+3]_367 12583 0.00019 374_[+3]_114 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=12 seqs=32 8324 ( 182) CCCAAGTTGAAC 1 25172 ( 68) CACAAGTTCAAC 1 30031 ( 396) AACAAGTTCAAC 1 46529 ( 348) CAAAAGTTGAAG 1 30643 ( 352) CACGAGTTGAAG 1 29266 ( 352) CACGAGTTGAAG 1 22956 ( 78) CACAGGTTGAAC 1 22395 ( 299) CCAAAGTTGAAG 1 14386 ( 145) CCCAAGTTGGAC 1 44202 ( 166) CAAAAGTTCAAA 1 16302 ( 252) CAAAACTTGAAC 1 23257 ( 101) CACAAATTCAAA 1 20331 ( 242) GGCAAGTTGAAA 1 46454 ( 438) CGAAACTTGAAC 1 30690 ( 148) CCAAACTTCAAC 1 50705 ( 75) AACGAATTGAAA 1 17531 ( 386) ACAAAATTGAAC 1 26293 ( 335) GACAGGTTGAAG 1 22006 ( 390) CTCAAGTTGGAA 1 22680 ( 22) GCCAAGTTGGAG 1 25893 ( 352) ATCAAATTGAAG 1 25168 ( 264) CGCAATTTCAAC 1 38559 ( 213) TCCAACTTGAAA 1 54027 ( 165) CACGAATTCGAC 1 12379 ( 202) ACCGAGTTCGAA 1 55057 ( 356) GACAGCTTCAAC 1 22993 ( 430) ACCGGCTTGAAC 1 44056 ( 149) AGAAATTTGAAA 1 43157 ( 208) ATCGACTTCAAG 1 49850 ( 164) AGCAGGTTCGAA 1 17326 ( 122) CAAAAGTTCACA 1 12583 ( 375) TACGAATTGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 24939 bayes= 10.342 E= 4.5e-003 19 108 -87 -213 92 16 -54 -154 19 151 -1164 -1164 160 -1164 13 -1164 177 -1164 -54 -1164 -40 -20 122 -213 -1164 -1164 -1164 187 -1164 -1164 -1164 187 -1164 58 145 -1164 166 -1164 -6 -1164 197 -301 -1164 -1164 34 69 30 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 32 E= 4.5e-003 0.281250 0.531250 0.125000 0.062500 0.468750 0.281250 0.156250 0.093750 0.281250 0.718750 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.843750 0.000000 0.156250 0.000000 0.187500 0.218750 0.531250 0.062500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.375000 0.625000 0.000000 0.781250 0.000000 0.218750 0.000000 0.968750 0.031250 0.000000 0.000000 0.312500 0.406250 0.281250 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [CA][AC][CA][AG]A[GC]TT[GC][AG]A[CAG] -------------------------------------------------------------------------------- Time 74.76 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 17326 1.14e-01 500 9046 6.05e-01 500 17531 2.24e-04 108_[+1(1.60e-06)]_265_\ [+3(2.48e-05)]_103 54027 7.41e-05 36_[+1(1.09e-07)]_116_\ [+3(5.64e-05)]_324 17766 1.15e-02 225_[+1(5.54e-06)]_263 43157 2.36e-03 2_[+1(3.94e-06)]_486 9241 8.81e-01 500 13877 9.00e-01 500 14442 7.36e-01 500 14386 3.34e-04 144_[+3(3.62e-06)]_33_\ [+1(2.03e-05)]_299 22006 8.46e-02 389_[+3(3.03e-05)]_99 29266 1.12e-07 16_[+2(4.75e-07)]_17_[+1(3.94e-06)]_\ 292_[+3(2.02e-06)]_137 38559 6.10e-07 57_[+1(2.44e-06)]_143_\ [+3(5.64e-05)]_22_[+2(1.80e-07)]_240 6062 9.85e-01 500 22395 4.33e-05 298_[+3(3.62e-06)]_14_\ [+2(2.07e-06)]_162 22680 6.45e-02 21_[+3(3.33e-05)]_467 25168 2.14e-03 112_[+1(6.92e-06)]_139_\ [+3(5.19e-05)]_225 50705 8.02e-04 74_[+3(2.22e-05)]_29_[+2(3.05e-06)]_\ 371 25172 6.98e-06 67_[+3(3.41e-07)]_209_\ [+1(6.89e-07)]_200 18049 4.28e-01 500 9799 2.73e-04 250_[+2(8.49e-05)]_116_\ [+2(9.52e-09)]_106 30031 2.09e-05 316_[+2(1.11e-05)]_65_\ [+3(1.14e-06)]_93 22956 1.07e-02 77_[+3(3.28e-06)]_411 22993 2.08e-01 429_[+3(9.95e-05)]_59 23257 1.28e-04 100_[+3(5.58e-06)]_375_\ [+1(3.38e-06)]_1 55057 1.33e-02 325_[+2(7.87e-05)]_16_\ [+3(8.74e-05)]_133 30643 1.12e-07 16_[+2(4.75e-07)]_17_[+1(3.94e-06)]_\ 292_[+3(2.02e-06)]_137 30648 3.00e-04 369_[+2(9.52e-09)]_117 30690 1.41e-01 147_[+3(2.22e-05)]_341 8324 1.25e-05 181_[+3(2.23e-07)]_8_[+2(3.18e-06)]_\ 285 16302 5.07e-04 70_[+1(1.65e-05)]_169_\ [+3(5.58e-06)]_237 44056 2.25e-01 500 25893 2.36e-06 144_[+2(2.70e-05)]_134_\ [+1(1.21e-05)]_47_[+3(4.47e-05)]_1_[+2(2.07e-07)]_122 44585 4.91e-02 400_[+1(6.50e-06)]_88 11006 5.18e-01 500 26293 5.38e-05 63_[+2(4.60e-05)]_130_\ [+2(6.86e-05)]_69_[+2(3.91e-07)]_30_[+3(3.03e-05)]_154 26422 4.97e-03 214_[+1(7.47e-05)]_94_\ [+1(2.13e-06)]_168 12379 2.85e-01 201_[+3(7.16e-05)]_287 20331 4.01e-02 241_[+3(1.44e-05)]_247 12583 1.27e-01 500 46454 4.25e-05 379_[+1(5.47e-05)]_18_\ [+2(2.64e-06)]_14_[+3(2.02e-05)]_51 44202 2.10e-05 165_[+3(4.68e-06)]_107_\ [+1(1.61e-07)]_204 46433 6.11e-03 160_[+1(8.72e-06)]_328 44507 4.50e-01 500 46529 9.89e-05 347_[+3(1.52e-06)]_77_\ [+1(6.92e-06)]_52 43786 8.81e-03 123_[+1(2.03e-05)]_365 49850 1.19e-01 500 34932 5.95e-01 500 43689 3.27e-03 266_[+1(6.04e-06)]_222 34590 1.81e-03 312_[+2(1.07e-07)]_174 54499 9.88e-02 162_[+2(6.86e-05)]_324 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************