******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/112/112.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 42545 1.0000 500 42677 1.0000 500 31731 1.0000 500 43133 1.0000 500 9348 1.0000 500 17885 1.0000 500 54589 1.0000 500 13331 1.0000 500 46777 1.0000 500 13402 1.0000 500 36913 1.0000 500 37136 1.0000 500 47393 1.0000 500 13894 1.0000 500 47510 1.0000 500 47675 1.0000 500 51100 1.0000 500 14626 1.0000 500 14756 1.0000 500 43336 1.0000 500 39710 1.0000 500 15613 1.0000 500 33218 1.0000 500 44505 1.0000 500 44877 1.0000 500 35063 1.0000 500 20183 1.0000 500 35580 1.0000 500 35680 1.0000 500 20470 1.0000 500 12578 1.0000 500 48879 1.0000 500 44320 1.0000 500 37687 1.0000 500 44898 1.0000 500 44626 1.0000 500 45833 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/112/112.seqs.fa -oc motifs/112 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 37 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 18500 N= 37 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.261 C 0.245 G 0.232 T 0.262 Background letter frequencies (from dataset with add-one prior applied): A 0.261 C 0.245 G 0.232 T 0.262 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 16 sites = 20 llr = 224 E-value = 7.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :5:51::517:13981 pos.-specific C 3:5:2:539::14112 probability G 21211:::::a::12: matrix T 65457a62:3:94::8 bits 2.1 * 1.9 * * 1.7 * * 1.5 * * * * Relative 1.3 * * ** * Entropy 1.1 ** **** *** (16.2 bits) 0.8 ** **** *** 0.6 ** **** **** *** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel TACTTTTACAGTCAAT consensus CTTA CC T T C sequence G T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 47675 77 4.91e-09 TGGCCATCTT TACATTTACAGTTAAT TGCTCTCTGA 37136 340 3.51e-08 ACCAGGTACA CTCTTTCACAGTCAAT GCGAGAAAGG 42677 138 7.45e-08 GTCTCGACCA CATTTTCACAGTCAAT CATAACTTTA 44505 91 1.23e-07 GCGGATAATT TGCATTCACAGTCAAT AGGTTGCGAT 31731 320 7.45e-07 ACCATTGAGT TTCATTCCCAGACAAT CACATAGATT 44877 427 9.21e-07 CTGGACCGGA TACTGTTACTGTAAAT TCGGCCTTCG 36913 322 1.28e-06 TGCATTGCAT TACTGTTACAGTAAAC TTCTCGAAGA 39710 165 1.72e-06 AGTGGAAAGT TTGATTCCCTGTCAAC GAGTCTCGTT 48879 405 2.31e-06 GATACATACA TATATTTCCAGTAAAA TATACACTAG 20183 258 3.34e-06 GAAATGTACT GTTACTTACTGTTAAT TCGCTTGCTC 44898 286 3.63e-06 ACGGTTGACA CACGTTTACAGTTAAC ACAGTAAGTC 47393 331 3.95e-06 TCTATTCTGC TATTTTCCAAGTCAAC AACCGCTCCG 51100 482 5.95e-06 GCTGCTCGTA TTGTTTCAAAGTTAGT GCA 17885 473 5.95e-06 TTCAGTTCTT TTCTTTTTCTGTAGAT AAAGTCAAGA 35063 285 8.10e-06 TCGAACTTCC GTGAATCACAGTAAAT TCGAGACTGA 20470 78 1.01e-05 ATTATGTACA GATATTTTCAGCCAAT CAATGGGGGA 46777 473 1.16e-05 CGTATATGTA TATACTTTCAGTTACT ATGCATGTGA 13331 139 1.33e-05 CGGAACATTA TTCTTTTCCTGTTCGT AGAAGCCAAA 42545 460 1.33e-05 GTATACTGAT CTGTTTCTCTGATAAT AGAACGTTGA 43133 114 1.85e-05 GATTTCGAAT CGTTCTTCCAGTAAGT CAATCGCGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 47675 4.9e-09 76_[+1]_408 37136 3.5e-08 339_[+1]_145 42677 7.5e-08 137_[+1]_347 44505 1.2e-07 90_[+1]_394 31731 7.4e-07 319_[+1]_165 44877 9.2e-07 426_[+1]_58 36913 1.3e-06 321_[+1]_163 39710 1.7e-06 164_[+1]_320 48879 2.3e-06 404_[+1]_80 20183 3.3e-06 257_[+1]_227 44898 3.6e-06 285_[+1]_199 47393 3.9e-06 330_[+1]_154 51100 6e-06 481_[+1]_3 17885 6e-06 472_[+1]_12 35063 8.1e-06 284_[+1]_200 20470 1e-05 77_[+1]_407 46777 1.2e-05 472_[+1]_12 13331 1.3e-05 138_[+1]_346 42545 1.3e-05 459_[+1]_25 43133 1.9e-05 113_[+1]_371 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=16 seqs=20 47675 ( 77) TACATTTACAGTTAAT 1 37136 ( 340) CTCTTTCACAGTCAAT 1 42677 ( 138) CATTTTCACAGTCAAT 1 44505 ( 91) TGCATTCACAGTCAAT 1 31731 ( 320) TTCATTCCCAGACAAT 1 44877 ( 427) TACTGTTACTGTAAAT 1 36913 ( 322) TACTGTTACAGTAAAC 1 39710 ( 165) TTGATTCCCTGTCAAC 1 48879 ( 405) TATATTTCCAGTAAAA 1 20183 ( 258) GTTACTTACTGTTAAT 1 44898 ( 286) CACGTTTACAGTTAAC 1 47393 ( 331) TATTTTCCAAGTCAAC 1 51100 ( 482) TTGTTTCAAAGTTAGT 1 17885 ( 473) TTCTTTTTCTGTAGAT 1 35063 ( 285) GTGAATCACAGTAAAT 1 20470 ( 78) GATATTTTCAGCCAAT 1 46777 ( 473) TATACTTTCAGTTACT 1 13331 ( 139) TTCTTTTCCTGTTCGT 1 42545 ( 460) CTGTTTCTCTGATAAT 1 43133 ( 114) CGTTCTTCCAGTAAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 17945 bayes= 10.0596 E= 7.4e-002 -1097 3 -63 120 78 -1097 -121 78 -1097 88 -21 42 78 -1097 -221 93 -238 -70 -121 142 -1097 -1097 -1097 193 -1097 88 -1097 107 94 29 -1097 -39 -138 188 -1097 -1097 142 -1097 -1097 20 -1097 -1097 211 -1097 -138 -229 -1097 170 20 52 -1097 42 178 -229 -221 -1097 161 -229 -63 -1097 -238 -29 -1097 152 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 20 E= 7.4e-002 0.000000 0.250000 0.150000 0.600000 0.450000 0.000000 0.100000 0.450000 0.000000 0.450000 0.200000 0.350000 0.450000 0.000000 0.050000 0.500000 0.050000 0.150000 0.100000 0.700000 0.000000 0.000000 0.000000 1.000000 0.000000 0.450000 0.000000 0.550000 0.500000 0.300000 0.000000 0.200000 0.100000 0.900000 0.000000 0.000000 0.700000 0.000000 0.000000 0.300000 0.000000 0.000000 1.000000 0.000000 0.100000 0.050000 0.000000 0.850000 0.300000 0.350000 0.000000 0.350000 0.900000 0.050000 0.050000 0.000000 0.800000 0.050000 0.150000 0.000000 0.050000 0.200000 0.000000 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [TC][AT][CTG][TA]TT[TC][ACT]C[AT]GT[CTA]AA[TC] -------------------------------------------------------------------------------- Time 14.23 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 13 llr = 188 E-value = 1.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :13728:3a15:26262359a pos.-specific C 2::1:227:7::22231:3:: probability G 17515:::::2a::71671:: matrix T 82222:8::23:62::2:21: bits 2.1 * 1.9 * * * 1.7 * * * 1.5 * * ** Relative 1.3 ** * * * ** Entropy 1.1 * **** * * ** (20.9 bits) 0.8 ** ***** * ** * ** 0.6 ********** ***** * ** 0.4 ****************** ** 0.2 ********************* 0.0 --------------------- Multilevel TGGAGATCACAGTAGAGGAAA consensus TA A CA TT AC C AC sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 37136 111 9.09e-12 AAAACGACGA TGGAGATCACAGTTGAGGAAA ACGATGAACT 51100 150 5.65e-10 AAAACGACGA TGGAGATCACAGTTGGGGAAA ATGATGAACT 44320 51 8.06e-09 TAGAGCATGC TGAAGACAACGGTAGCGGTAA CTTTCTTTAA 35580 77 3.69e-08 TCTCGGGACA TGAAGATAATAGAAGCCGAAA ACGTTTGTCC 47675 397 7.94e-08 GCCAATAGTC TTTTTCTCACAGTAGAGGCAA TGTTCACGTC 43133 179 1.14e-07 TTCTTTTCAA CGGAAACCACTGCCGAGAAAA TTATCAGATC 44505 67 1.74e-07 GTTCCAAACG TTTTGATCACGGTAGCGGATA ATTTGCATTC 14626 119 2.05e-07 TTCGAACCGA TGAATATAATAGAACAAGCAA CATACGCAGA 31731 233 2.22e-07 GGCCAATAAG TGAGGATAACTGTCGCAAAAA TGACCGACTG 14756 274 2.60e-07 ACAATCATGA CGGAAACCAAGGCAGAGGCAA AGTCCTCGGC 37687 475 3.81e-07 AGCTATACTC TAGCGATCACAGTAAATGTAA GCAAC 43336 256 5.46e-07 TAGAGCTACC TTGAAATCATTGAAAATACAA ATAAAGTGAA 47393 143 1.51e-06 GTGTCCCGAT GGGATCTCACTGTCCAGAGAA AAAGAGAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 37136 9.1e-12 110_[+2]_369 51100 5.7e-10 149_[+2]_330 44320 8.1e-09 50_[+2]_429 35580 3.7e-08 76_[+2]_403 47675 7.9e-08 396_[+2]_83 43133 1.1e-07 178_[+2]_301 44505 1.7e-07 66_[+2]_413 14626 2.1e-07 118_[+2]_361 31731 2.2e-07 232_[+2]_247 14756 2.6e-07 273_[+2]_206 37687 3.8e-07 474_[+2]_5 43336 5.5e-07 255_[+2]_224 47393 1.5e-06 142_[+2]_337 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=13 37136 ( 111) TGGAGATCACAGTTGAGGAAA 1 51100 ( 150) TGGAGATCACAGTTGGGGAAA 1 44320 ( 51) TGAAGACAACGGTAGCGGTAA 1 35580 ( 77) TGAAGATAATAGAAGCCGAAA 1 47675 ( 397) TTTTTCTCACAGTAGAGGCAA 1 43133 ( 179) CGGAAACCACTGCCGAGAAAA 1 44505 ( 67) TTTTGATCACGGTAGCGGATA 1 14626 ( 119) TGAATATAATAGAACAAGCAA 1 31731 ( 233) TGAGGATAACTGTCGCAAAAA 1 14756 ( 274) CGGAAACCAAGGCAGAGGCAA 1 37687 ( 475) TAGCGATCACAGTAAATGTAA 1 43336 ( 256) TTGAAATCATTGAAAATACAA 1 47393 ( 143) GGGATCTCACTGTCCAGAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 17760 bayes= 10.1702 E= 1.0e+000 -1035 -67 -159 155 -176 -1035 158 -18 24 -1035 121 -77 141 -167 -159 -77 -18 -1035 121 -18 169 -67 -1035 -1035 -1035 -8 -1035 155 24 150 -1035 -1035 194 -1035 -1035 -1035 -176 150 -1035 -18 82 -1035 -1 23 -1035 -1035 211 -1035 -18 -67 -1035 123 124 -8 -1035 -77 -76 -67 158 -1035 124 33 -159 -1035 -76 -167 141 -77 24 -1035 158 -1035 82 33 -159 -77 182 -1035 -1035 -177 194 -1035 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 13 E= 1.0e+000 0.000000 0.153846 0.076923 0.769231 0.076923 0.000000 0.692308 0.230769 0.307692 0.000000 0.538462 0.153846 0.692308 0.076923 0.076923 0.153846 0.230769 0.000000 0.538462 0.230769 0.846154 0.153846 0.000000 0.000000 0.000000 0.230769 0.000000 0.769231 0.307692 0.692308 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.076923 0.692308 0.000000 0.230769 0.461538 0.000000 0.230769 0.307692 0.000000 0.000000 1.000000 0.000000 0.230769 0.153846 0.000000 0.615385 0.615385 0.230769 0.000000 0.153846 0.153846 0.153846 0.692308 0.000000 0.615385 0.307692 0.076923 0.000000 0.153846 0.076923 0.615385 0.153846 0.307692 0.000000 0.692308 0.000000 0.461538 0.307692 0.076923 0.153846 0.923077 0.000000 0.000000 0.076923 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- T[GT][GA]A[GAT]A[TC][CA]A[CT][ATG]G[TA][AC]G[AC]G[GA][AC]AA -------------------------------------------------------------------------------- Time 28.58 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 13 llr = 187 E-value = 1.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :2:11:45:2:82:5883:28 pos.-specific C 12:1:2::1:3:71122252: probability G 2:7:825:967::94::553: matrix T 86382715:2:22::::::32 bits 2.1 1.9 1.7 * * 1.5 * * Relative 1.3 ** * * * ** * Entropy 1.1 * *** * ** * ** * * (20.8 bits) 0.8 * **** ** **** ** * * 0.6 ***************** * * 0.4 ******************* * 0.2 ******************* * 0.0 --------------------- Multilevel TTGTGTGTGGGACGAAAGGGA consensus CT AA TCT GCCACT sequence C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 51100 244 2.58e-12 CTGTGATTCG TTGTGTGTGGGACGGAAGCGA CTTGGCTTTT 37136 205 2.58e-12 CTGTGATTCG TTGTGTGTGGGACGGAAGCGA CTTGTCTTTT 35063 176 5.35e-09 TGGCGCAGCT TAGTGTGAGGCACGACAGCCA TGGTCCGAAC 12578 109 3.80e-08 GTCTCTCTCT GTGTGTGTGTGTAGGAAGGTA TGGAACGGGC 14626 379 1.35e-07 CATTGGCACG TTGTAGATGGGACGAAACGTT GTGGTGGGAT 44626 205 1.73e-07 ATCGGACGAG TCGAGTATGAGACGAACAGTA CCCGGAAACG 43133 49 1.73e-07 TTCGGTCACT TATTGTAAGGGACGCACCGCA CTTTTGCGGA 33218 310 2.38e-07 TAATGGGAAG CTTTTTGTGGGATGAAACCGA GAAAGCGGAG 54589 280 2.99e-07 TTCCAAAGGG GCGTGCGACTGACGAAAGGTA CACACGAGAA 17885 250 4.97e-07 TGGCATAAGG TCTTTTGAGGCTCGACAAGAA GGTACGTCGT 15613 158 6.11e-07 CGTGCTTCTC TTTCGGATGGCAAGGAAACGA GGACGTGTGA 47510 308 1.03e-06 GATTGCCTGA TTGTGTTAGTGATGACAACAT TGCGAGAGAC 44877 221 1.65e-06 GACAGAGTAC TTGTGCAAGACTCCGACGGCA ATCTCACTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 51100 2.6e-12 243_[+3]_236 37136 2.6e-12 204_[+3]_275 35063 5.3e-09 175_[+3]_304 12578 3.8e-08 108_[+3]_371 14626 1.4e-07 378_[+3]_101 44626 1.7e-07 204_[+3]_275 43133 1.7e-07 48_[+3]_431 33218 2.4e-07 309_[+3]_170 54589 3e-07 279_[+3]_200 17885 5e-07 249_[+3]_230 15613 6.1e-07 157_[+3]_322 47510 1e-06 307_[+3]_172 44877 1.7e-06 220_[+3]_259 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=13 51100 ( 244) TTGTGTGTGGGACGGAAGCGA 1 37136 ( 205) TTGTGTGTGGGACGGAAGCGA 1 35063 ( 176) TAGTGTGAGGCACGACAGCCA 1 12578 ( 109) GTGTGTGTGTGTAGGAAGGTA 1 14626 ( 379) TTGTAGATGGGACGAAACGTT 1 44626 ( 205) TCGAGTATGAGACGAACAGTA 1 43133 ( 49) TATTGTAAGGGACGCACCGCA 1 33218 ( 310) CTTTTTGTGGGATGAAACCGA 1 54589 ( 280) GCGTGCGACTGACGAAAGGTA 1 17885 ( 250) TCTTTTGAGGCTCGACAAGAA 1 15613 ( 158) TTTCGGATGGCAAGGAAACGA 1 47510 ( 308) TTGTGTTAGTGATGACAACAT 1 44877 ( 221) TTGTGCAAGACTCCGACGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 17760 bayes= 10.9457 E= 1.2e+000 -1035 -167 -59 155 -76 -8 -1035 123 -1035 -1035 158 23 -176 -167 -1035 169 -176 -1035 173 -77 -1035 -67 -59 140 56 -1035 121 -177 82 -1035 -1035 104 -1035 -167 199 -1035 -76 -1035 141 -18 -1035 33 158 -1035 156 -1035 -1035 -18 -76 150 -1035 -77 -1035 -167 199 -1035 104 -167 73 -1035 156 -8 -1035 -1035 156 -8 -1035 -1035 24 -8 99 -1035 -1035 92 121 -1035 -76 -8 41 23 169 -1035 -1035 -77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 13 E= 1.2e+000 0.000000 0.076923 0.153846 0.769231 0.153846 0.230769 0.000000 0.615385 0.000000 0.000000 0.692308 0.307692 0.076923 0.076923 0.000000 0.846154 0.076923 0.000000 0.769231 0.153846 0.000000 0.153846 0.153846 0.692308 0.384615 0.000000 0.538462 0.076923 0.461538 0.000000 0.000000 0.538462 0.000000 0.076923 0.923077 0.000000 0.153846 0.000000 0.615385 0.230769 0.000000 0.307692 0.692308 0.000000 0.769231 0.000000 0.000000 0.230769 0.153846 0.692308 0.000000 0.153846 0.000000 0.076923 0.923077 0.000000 0.538462 0.076923 0.384615 0.000000 0.769231 0.230769 0.000000 0.000000 0.769231 0.230769 0.000000 0.000000 0.307692 0.230769 0.461538 0.000000 0.000000 0.461538 0.538462 0.000000 0.153846 0.230769 0.307692 0.307692 0.846154 0.000000 0.000000 0.153846 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- T[TC][GT]TGT[GA][TA]G[GT][GC][AT]CG[AG][AC][AC][GAC][GC][GTC]A -------------------------------------------------------------------------------- Time 42.37 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 42545 9.56e-03 459_[+1(1.33e-05)]_25 42677 1.93e-04 137_[+1(7.45e-08)]_347 31731 5.32e-06 232_[+2(2.22e-07)]_66_\ [+1(7.45e-07)]_165 43133 1.26e-08 48_[+3(1.73e-07)]_44_[+1(1.85e-05)]_\ 49_[+2(1.14e-07)]_301 9348 5.45e-01 500 17885 3.91e-06 249_[+3(4.97e-07)]_102_\ [+2(6.92e-05)]_79_[+1(5.95e-06)]_12 54589 9.53e-04 279_[+3(2.99e-07)]_200 13331 5.77e-02 138_[+1(1.33e-05)]_346 46777 3.79e-02 472_[+1(1.16e-05)]_12 13402 7.61e-01 500 36913 1.10e-02 321_[+1(1.28e-06)]_163 37136 1.23e-19 110_[+2(9.09e-12)]_73_\ [+3(2.58e-12)]_114_[+1(3.51e-08)]_145 47393 1.98e-05 142_[+2(1.51e-06)]_167_\ [+1(3.95e-06)]_154 13894 9.83e-01 500 47510 6.89e-03 307_[+3(1.03e-06)]_172 47675 1.14e-08 76_[+1(4.91e-09)]_304_\ [+2(7.94e-08)]_83 51100 8.73e-16 149_[+2(5.65e-10)]_73_\ [+3(2.58e-12)]_217_[+1(5.95e-06)]_3 14626 6.74e-07 118_[+2(2.05e-07)]_239_\ [+3(1.35e-07)]_101 14756 1.48e-03 273_[+2(2.60e-07)]_206 43336 1.77e-03 255_[+2(5.46e-07)]_224 39710 1.83e-02 164_[+1(1.72e-06)]_320 15613 2.18e-03 157_[+3(6.11e-07)]_322 33218 1.28e-03 309_[+3(2.38e-07)]_170 44505 2.18e-07 66_[+2(1.74e-07)]_3_[+1(1.23e-07)]_\ 394 44877 1.68e-05 174_[+1(4.59e-05)]_30_\ [+3(1.65e-06)]_185_[+1(9.21e-07)]_58 35063 2.48e-07 175_[+3(5.35e-09)]_88_\ [+1(8.10e-06)]_200 20183 6.22e-03 257_[+1(3.34e-06)]_227 35580 5.76e-04 76_[+2(3.69e-08)]_403 35680 5.18e-02 500 20470 5.52e-02 77_[+1(1.01e-05)]_407 12578 5.40e-04 108_[+3(3.80e-08)]_371 48879 1.28e-02 404_[+1(2.31e-06)]_80 44320 5.55e-06 50_[+2(8.06e-09)]_352_\ [+3(2.06e-05)]_56 37687 2.77e-03 474_[+2(3.81e-07)]_5 44898 1.98e-03 285_[+1(3.63e-06)]_199 44626 2.27e-04 204_[+3(1.73e-07)]_275 45833 3.89e-01 500 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************