******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/121/121.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 42688 1.0000 500 42723 1.0000 500 9267 1.0000 500 43076 1.0000 500 54577 1.0000 500 46780 1.0000 500 4286 1.0000 500 13549 1.0000 500 38518 1.0000 500 3369 1.0000 500 48865 1.0000 500 15423 1.0000 500 49252 1.0000 500 49987 1.0000 500 16586 1.0000 500 43791 1.0000 500 16960 1.0000 500 44535 1.0000 500 54289 1.0000 500 44816 1.0000 500 51819 1.0000 500 35118 1.0000 500 19949 1.0000 500 51869 1.0000 500 35250 1.0000 500 12520 1.0000 500 12451 1.0000 500 27719 1.0000 500 36142 1.0000 500 36197 1.0000 500 48515 1.0000 500 31963 1.0000 500 48689 1.0000 500 43238 1.0000 500 46361 1.0000 500 49495 1.0000 500 46430 1.0000 500 37042 1.0000 500 37608 1.0000 500 46099 1.0000 500 47370 1.0000 500 47708 1.0000 500 41244 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/121/121.seqs.fa -oc motifs/121 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 43 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 21500 N= 43 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.259 C 0.231 G 0.232 T 0.277 Background letter frequencies (from dataset with add-one prior applied): A 0.259 C 0.231 G 0.232 T 0.277 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 12 sites = 43 llr = 343 E-value = 1.1e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :::9:3:::953 pos.-specific C 424:a1114:31 probability G 1:41::8:4:21 matrix T 482::6:92::5 bits 2.1 1.9 * 1.7 * 1.5 ** Relative 1.3 * ** ** * Entropy 1.1 * ** ** * (11.5 bits) 0.8 * ** ** * 0.6 ********** 0.4 *********** 0.2 ************ 0.0 ------------ Multilevel CTCACTGTCAAT consensus T G A G CA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 46361 333 7.24e-07 AATCATGCCT TTGACTGTGAAT CTCAATCGGC 48865 255 8.51e-07 GACTGTGACA CTGACTGTGAAA CAAAATCAGA 43791 356 1.91e-06 TTGACTGCGA CTGACTGTGAGT AACAAATAAG 31963 419 2.97e-06 TCAGAGCAGA CTGACTGTGACA ATGGATTTTG 46099 269 4.81e-06 GCAATGCAAC CTCACTGTCAAC TGAAAATCTT 13549 198 5.66e-06 CCTAACATGC CTCACAGTCACT GTCAGTCGAA 4286 2 5.66e-06 G CTTACTGTCAAA TAGGAACACT 48515 355 6.38e-06 AGTAACGACA TTCACTGTCAAC CGTGACGACC 16586 39 6.38e-06 CAAATCCGCT CTCACAGTCAGT CAATCGCACA 41244 103 7.24e-06 GAAACGTTAG TCGACTGTGAAT CGACCTTGAT 49495 332 7.24e-06 ACAAGGACCA TTCACAGTCACT TACCTTAGCC 3369 66 9.33e-06 TTATATGCGA CTCACTCTCAAT TTTCAAAGAA 47370 165 1.09e-05 TCCAAGCACT CTCACCGTGAAT ACGATAGGTA 35118 406 1.09e-05 GCTGAGCTCG CCCACTGTCACT CCCACCGTGC 42723 170 1.09e-05 CGTCTCGATG TTCACAGTCACA GAGAAATTAC 49987 116 1.90e-05 ACATTGATTG TTGACTGTTACA GTAAACGAAT 12451 311 2.12e-05 CATGTCCCAC TTGACTGCCAAA CTTGACATCC 51819 180 2.12e-05 CATGTCCTAC TTGACTGCCAAA CTTGACCTCT 36142 208 2.37e-05 TCTCTTACGT ATGACTGTGAAT ATCCGTTCGG 27719 391 2.95e-05 CTCTATTTGT GTGACAGTCAAA AAAGACCTCG 36197 123 4.48e-05 TCGAAGATTC CTTACAGTTAAT GTAAGACAGA 43238 209 4.98e-05 TGATGTGTGT GTGACAGTGAGT GATATGAGTG 46780 281 4.98e-05 ACGACACCAC TTTACTGTTAGT AGAAAGCCCA 51869 247 5.50e-05 CACCTGTCGG CTTACTGTTAGA CTCGGTACCA 48689 441 1.05e-04 AGTTCGAGTA TTGACTGTCCCA CATTGCTTCA 49252 50 1.05e-04 TGTAGATGTT TTTACAGTTAGT CTTTTGTTGA 37608 114 1.15e-04 GGCAATTGCC TCGACTCTGAGT TGTCGCCATC 37042 285 1.25e-04 GGTTGCGTTC TTGACTATGACA TCCGTTGGAC 43076 394 1.36e-04 TATCTTTTTG TTCATTGTGAAT CTGGTACTGG 35250 181 1.73e-04 GGTCCGCTAG CCGACTGCGAAC GAAGCGTGCA 44816 476 2.19e-04 TGAACAAAAG TTCACAGTGTAT GATGGAAACG 15423 315 2.19e-04 CTATCAAGAA TTCACTGTCCAG TTTGCAAGCA 38518 279 2.37e-04 CCTACCCTAC ATCACAGTCAAG CGTCTTATAG 54577 94 2.56e-04 CCGAGTTTTG CCGACTCTCAGC AATATGTGGC 54289 9 2.76e-04 AAAGGTCA TTTACCGTTACA TCACGGGCAA 16960 49 2.96e-04 TCTCGCGTTA CCCACCGTTAGA TTAGTTTGGG 9267 327 4.19e-04 AATGCTGGCG GCGGCTGTGAAA GATTCTCCGA 42688 167 4.80e-04 TTGTTAGGTG GTCACAGTCGGT CATTTTTGCG 44535 36 5.47e-04 CCTTATGATC CCTTCTGTCAAT ATGTAGGAAT 19949 287 6.22e-04 AATAGTCTCC CTCACCCCCACA GTTTCTGTAC 12520 270 6.61e-04 CCCTTCTTAC CTCACACCGACC CAAATGGGAC 47708 1 1.11e-03 . CTGGCTATGAAG TTGAAGGATT 46430 228 1.18e-03 GGTTTCGGGT TTCGCTCTGGAT TTGGTCTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 46361 7.2e-07 332_[+1]_156 48865 8.5e-07 254_[+1]_234 43791 1.9e-06 355_[+1]_133 31963 3e-06 418_[+1]_70 46099 4.8e-06 268_[+1]_220 13549 5.7e-06 197_[+1]_291 4286 5.7e-06 1_[+1]_487 48515 6.4e-06 354_[+1]_134 16586 6.4e-06 38_[+1]_450 41244 7.2e-06 102_[+1]_386 49495 7.2e-06 331_[+1]_157 3369 9.3e-06 65_[+1]_423 47370 1.1e-05 164_[+1]_324 35118 1.1e-05 405_[+1]_83 42723 1.1e-05 169_[+1]_319 49987 1.9e-05 115_[+1]_373 12451 2.1e-05 310_[+1]_178 51819 2.1e-05 179_[+1]_309 36142 2.4e-05 207_[+1]_281 27719 2.9e-05 390_[+1]_98 36197 4.5e-05 122_[+1]_366 43238 5e-05 208_[+1]_280 46780 5e-05 280_[+1]_208 51869 5.5e-05 246_[+1]_242 48689 0.00011 440_[+1]_48 49252 0.00011 49_[+1]_439 37608 0.00011 113_[+1]_375 37042 0.00012 284_[+1]_204 43076 0.00014 393_[+1]_95 35250 0.00017 180_[+1]_308 44816 0.00022 475_[+1]_13 15423 0.00022 314_[+1]_174 38518 0.00024 278_[+1]_210 54577 0.00026 93_[+1]_395 54289 0.00028 8_[+1]_480 16960 0.0003 48_[+1]_440 9267 0.00042 326_[+1]_162 42688 0.00048 166_[+1]_322 44535 0.00055 35_[+1]_453 19949 0.00062 286_[+1]_202 12520 0.00066 269_[+1]_219 47708 0.0011 [+1]_488 46430 0.0012 227_[+1]_261 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=12 seqs=43 46361 ( 333) TTGACTGTGAAT 1 48865 ( 255) CTGACTGTGAAA 1 43791 ( 356) CTGACTGTGAGT 1 31963 ( 419) CTGACTGTGACA 1 46099 ( 269) CTCACTGTCAAC 1 13549 ( 198) CTCACAGTCACT 1 4286 ( 2) CTTACTGTCAAA 1 48515 ( 355) TTCACTGTCAAC 1 16586 ( 39) CTCACAGTCAGT 1 41244 ( 103) TCGACTGTGAAT 1 49495 ( 332) TTCACAGTCACT 1 3369 ( 66) CTCACTCTCAAT 1 47370 ( 165) CTCACCGTGAAT 1 35118 ( 406) CCCACTGTCACT 1 42723 ( 170) TTCACAGTCACA 1 49987 ( 116) TTGACTGTTACA 1 12451 ( 311) TTGACTGCCAAA 1 51819 ( 180) TTGACTGCCAAA 1 36142 ( 208) ATGACTGTGAAT 1 27719 ( 391) GTGACAGTCAAA 1 36197 ( 123) CTTACAGTTAAT 1 43238 ( 209) GTGACAGTGAGT 1 46780 ( 281) TTTACTGTTAGT 1 51869 ( 247) CTTACTGTTAGA 1 48689 ( 441) TTGACTGTCCCA 1 49252 ( 50) TTTACAGTTAGT 1 37608 ( 114) TCGACTCTGAGT 1 37042 ( 285) TTGACTATGACA 1 43076 ( 394) TTCATTGTGAAT 1 35250 ( 181) CCGACTGCGAAC 1 44816 ( 476) TTCACAGTGTAT 1 15423 ( 315) TTCACTGTCCAG 1 38518 ( 279) ATCACAGTCAAG 1 54577 ( 94) CCGACTCTCAGC 1 54289 ( 9) TTTACCGTTACA 1 16960 ( 49) CCCACCGTTAGA 1 9267 ( 327) GCGGCTGTGAAA 1 42688 ( 167) GTCACAGTCGGT 1 44535 ( 36) CCTTCTGTCAAT 1 19949 ( 287) CTCACCCCCACA 1 12520 ( 270) CTCACACCGACC 1 47708 ( 1) CTGGCTATGAAG 1 46430 ( 228) TTCGCTCTGGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 21027 bayes= 8.93074 E= 1.1e-005 -248 93 -132 60 -1207 -31 -1207 155 -1207 85 85 -77 181 -1207 -173 -357 -1207 208 -1207 -357 11 -131 -1207 118 -248 -73 181 -1207 -1207 -99 -1207 167 -1207 93 77 -77 177 -231 -232 -357 98 14 0 -1207 43 -99 -173 75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 43 E= 1.1e-005 0.046512 0.441860 0.093023 0.418605 0.000000 0.186047 0.000000 0.813953 0.000000 0.418605 0.418605 0.162791 0.906977 0.000000 0.069767 0.023256 0.000000 0.976744 0.000000 0.023256 0.279070 0.093023 0.000000 0.627907 0.046512 0.139535 0.813953 0.000000 0.000000 0.116279 0.000000 0.883721 0.000000 0.441860 0.395349 0.162791 0.883721 0.046512 0.046512 0.023256 0.511628 0.255814 0.232558 0.000000 0.348837 0.116279 0.069767 0.465116 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CT]T[CG]AC[TA]GT[CG]A[ACG][TA] -------------------------------------------------------------------------------- Time 18.50 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 14 sites = 9 llr = 128 E-value = 1.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A ::a83a:::6:11a pos.-specific C a9:21::a41:8:: probability G :1::6:::41119: matrix T ::::::a:129::: bits 2.1 * * 1.9 * * *** * 1.7 *** *** ** 1.5 *** *** * ** Relative 1.3 **** *** * ** Entropy 1.1 **** *** **** (20.5 bits) 0.8 **** *** **** 0.6 ********* **** 0.4 ********* **** 0.2 ************** 0.0 -------------- Multilevel CCAAGATCCATCGA consensus CA GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------- 47370 333 6.35e-09 CGCAACGAGA CCAAGATCGATCGA ACTGTATCTG 12451 213 1.34e-08 TGATCATATC CCAAAATCCATCGA ACATATAATT 51819 103 1.34e-08 TGATCATATC CCAAAATCCATCGA ACCTATAATT 15423 148 1.16e-07 TGCGAATTTG CCAAAATCGCTCGA GTCGACCCAA 4286 66 1.16e-07 TATCACCAGG CCAAGATCCATCAA CGATACGATA 36142 161 4.04e-07 TTCTCCGAAT CGAAGATCGGTCGA CCAATAGACA 38518 362 5.87e-07 ACGAAAGTAT CCACGATCCTTAGA AGGATTGTAA 27719 423 7.13e-07 ACGACGAATG CCAAGATCTTTGGA GTGCTGCCCT 9267 61 7.83e-07 TGGGCCACGC CCACCATCGAGCGA TCGACGCCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 47370 6.3e-09 332_[+2]_154 12451 1.3e-08 212_[+2]_274 51819 1.3e-08 102_[+2]_384 15423 1.2e-07 147_[+2]_339 4286 1.2e-07 65_[+2]_421 36142 4e-07 160_[+2]_326 38518 5.9e-07 361_[+2]_125 27719 7.1e-07 422_[+2]_64 9267 7.8e-07 60_[+2]_426 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=14 seqs=9 47370 ( 333) CCAAGATCGATCGA 1 12451 ( 213) CCAAAATCCATCGA 1 51819 ( 103) CCAAAATCCATCGA 1 15423 ( 148) CCAAAATCGCTCGA 1 4286 ( 66) CCAAGATCCATCAA 1 36142 ( 161) CGAAGATCGGTCGA 1 38518 ( 362) CCACGATCCTTAGA 1 27719 ( 423) CCAAGATCTTTGGA 1 9267 ( 61) CCACCATCGAGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 20941 bayes= 11.3179 E= 1.1e-001 -982 211 -982 -982 -982 194 -106 -982 195 -982 -982 -982 158 -6 -982 -982 36 -106 126 -982 195 -982 -982 -982 -982 -982 -982 185 -982 211 -982 -982 -982 94 94 -132 110 -106 -106 -32 -982 -982 -106 168 -122 175 -106 -982 -122 -982 194 -982 195 -982 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 9 E= 1.1e-001 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 0.777778 0.222222 0.000000 0.000000 0.333333 0.111111 0.555556 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.444444 0.444444 0.111111 0.555556 0.111111 0.111111 0.222222 0.000000 0.000000 0.111111 0.888889 0.111111 0.777778 0.111111 0.000000 0.111111 0.000000 0.888889 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- CCA[AC][GA]ATC[CG][AT]TCGA -------------------------------------------------------------------------------- Time 36.31 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 13 sites = 11 llr = 133 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :::51:::::::2 pos.-specific C :a23::232:a6: probability G ::82:::3:::45 matrix T a::19a858a::3 bits 2.1 * * 1.9 ** * ** 1.7 ** * ** 1.5 *** ** ** Relative 1.3 *** *** **** Entropy 1.1 *** *** **** (17.5 bits) 0.8 *** *** **** 0.6 *** *** ***** 0.4 *** ********* 0.2 ************* 0.0 ------------- Multilevel TCGATTTTTTCCG consensus C C GT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------- 47370 281 7.66e-08 CGGGAGTGTC TCGATTTGTTCCG TGATCTGGTG 49987 336 9.82e-08 GTTGGAGACT TCGATTTTTTCGG AATCCTCCAC 12451 286 1.30e-07 GTGTGACATG TCGCTTTCTTCCG GACATGTCCC 36142 258 4.66e-07 CATACGGGAC TCGATTTTTTCGT TCATTTTTGG 54289 121 1.92e-06 CGCTGTGCCG TCCCTTTTTTCGG GCCTTCGTTC 44535 373 1.92e-06 TGCTACTATT TCGATTTCCTCCT TTGCTATTGG 49252 131 2.20e-06 GACGGGAAGA TCGGTTCTTTCGG TTCTCATTAC 46430 61 2.64e-06 ATGTAATCGG TCGCTTCGTTCCT TCGGTTCGGG 12520 76 3.51e-06 GAAGGCTCAC TCGTTTTGTTCCA ATTTGAGTCG 4286 453 4.24e-06 TGCCGGTAGT TCGGATTCTTCCG ATGCCTCCGT 43791 321 6.10e-06 GGACTATGTC TCCATTTTCTCCA ATGAAATTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 47370 7.7e-08 280_[+3]_207 49987 9.8e-08 335_[+3]_152 12451 1.3e-07 285_[+3]_202 36142 4.7e-07 257_[+3]_230 54289 1.9e-06 120_[+3]_367 44535 1.9e-06 372_[+3]_115 49252 2.2e-06 130_[+3]_357 46430 2.6e-06 60_[+3]_427 12520 3.5e-06 75_[+3]_412 4286 4.2e-06 452_[+3]_35 43791 6.1e-06 320_[+3]_167 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=13 seqs=11 47370 ( 281) TCGATTTGTTCCG 1 49987 ( 336) TCGATTTTTTCGG 1 12451 ( 286) TCGCTTTCTTCCG 1 36142 ( 258) TCGATTTTTTCGT 1 54289 ( 121) TCCCTTTTTTCGG 1 44535 ( 373) TCGATTTCCTCCT 1 49252 ( 131) TCGGTTCTTTCGG 1 46430 ( 61) TCGCTTCGTTCCT 1 12520 ( 76) TCGTTTTGTTCCA 1 4286 ( 453) TCGGATTCTTCCG 1 43791 ( 321) TCCATTTTCTCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 13 n= 20984 bayes= 10.4491 E= 1.9e+003 -1010 -1010 -1010 185 -1010 211 -1010 -1010 -1010 -35 182 -1010 81 24 -35 -161 -151 -1010 -1010 171 -1010 -1010 -1010 185 -1010 -35 -1010 156 -1010 24 23 71 -1010 -35 -1010 156 -1010 -1010 -1010 185 -1010 211 -1010 -1010 -1010 146 65 -1010 -51 -1010 123 -2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 13 nsites= 11 E= 1.9e+003 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.181818 0.818182 0.000000 0.454545 0.272727 0.181818 0.090909 0.090909 0.000000 0.000000 0.909091 0.000000 0.000000 0.000000 1.000000 0.000000 0.181818 0.000000 0.818182 0.000000 0.272727 0.272727 0.454545 0.000000 0.181818 0.000000 0.818182 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.636364 0.363636 0.000000 0.181818 0.000000 0.545455 0.272727 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- TCG[AC]TTT[TCG]TTC[CG][GT] -------------------------------------------------------------------------------- Time 54.20 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 42688 1.02e-01 500 42723 2.90e-02 169_[+1(1.09e-05)]_319 9267 1.34e-03 60_[+2(7.83e-07)]_426 43076 3.71e-02 77_[+3(7.62e-05)]_410 54577 1.71e-01 500 46780 1.61e-01 280_[+1(4.98e-05)]_208 4286 8.48e-08 1_[+1(5.66e-06)]_52_[+2(1.16e-07)]_\ 373_[+3(4.24e-06)]_35 13549 1.97e-02 197_[+1(5.66e-06)]_40_\ [+1(1.71e-05)]_239 38518 5.95e-04 361_[+2(5.87e-07)]_125 3369 2.21e-02 65_[+1(9.33e-06)]_423 48865 1.73e-03 242_[+1(2.97e-06)]_[+1(8.51e-07)]_\ 234 15423 3.77e-05 147_[+2(1.16e-07)]_339 49252 2.38e-03 130_[+3(2.20e-06)]_357 49987 1.62e-05 115_[+1(1.90e-05)]_117_\ [+1(4.48e-05)]_79_[+3(9.82e-08)]_152 16586 1.08e-03 38_[+1(6.38e-06)]_179_\ [+3(4.14e-05)]_61_[+1(1.28e-05)]_185 43791 2.29e-04 320_[+3(6.10e-06)]_22_\ [+1(1.91e-06)]_133 16960 4.71e-01 500 44535 7.34e-03 372_[+3(1.92e-06)]_115 54289 5.85e-03 120_[+3(1.92e-06)]_367 44816 3.93e-01 500 51819 3.21e-06 102_[+2(1.34e-08)]_63_\ [+1(2.12e-05)]_309 35118 2.12e-02 405_[+1(1.09e-05)]_83 19949 6.04e-01 500 51869 3.69e-03 246_[+1(5.50e-05)]_7_[+2(5.19e-05)]_\ 221 35250 3.96e-01 500 12520 8.65e-03 75_[+3(3.51e-06)]_412 12451 1.58e-09 212_[+2(1.34e-08)]_59_\ [+3(1.30e-07)]_12_[+1(2.12e-05)]_178 27719 6.16e-06 130_[+3(1.55e-05)]_247_\ [+1(2.95e-05)]_20_[+2(7.13e-07)]_52_[+1(3.29e-05)] 36142 1.30e-07 160_[+2(4.04e-07)]_33_\ [+1(2.37e-05)]_38_[+3(4.66e-07)]_230 36197 1.63e-01 122_[+1(4.48e-05)]_366 48515 7.27e-03 354_[+1(6.38e-06)]_134 31963 1.96e-02 418_[+1(2.97e-06)]_70 48689 1.32e-01 500 43238 1.73e-01 208_[+1(4.98e-05)]_280 46361 1.03e-03 332_[+1(7.24e-07)]_156 49495 1.58e-02 331_[+1(7.24e-06)]_157 46430 7.22e-03 60_[+3(2.64e-06)]_427 37042 8.59e-02 500 37608 1.02e-01 500 46099 7.35e-03 268_[+1(4.81e-06)]_220 47370 2.60e-10 164_[+1(1.09e-05)]_104_\ [+3(7.66e-08)]_39_[+2(6.35e-09)]_154 47708 6.27e-02 485_[+2(4.65e-05)]_1 41244 2.05e-02 102_[+1(7.24e-06)]_386 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************