******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/129/129.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 31605 1.0000 500 31748 1.0000 500 42932 1.0000 500 24792 1.0000 500 37127 1.0000 500 21388 1.0000 500 37543 1.0000 500 47389 1.0000 500 14191 1.0000 500 54787 1.0000 500 38009 1.0000 500 21961 1.0000 500 41721 1.0000 500 54110 1.0000 500 18337 1.0000 500 30145 1.0000 500 49658 1.0000 500 49726 1.0000 500 23547 1.0000 500 33257 1.0000 500 50440 1.0000 500 50540 1.0000 500 34521 1.0000 500 34522 1.0000 500 44989 1.0000 500 26813 1.0000 500 34933 1.0000 500 45961 1.0000 500 35954 1.0000 500 35973 1.0000 500 46333 1.0000 500 36666 1.0000 500 34371 1.0000 500 45212 1.0000 500 47610 1.0000 500 50125 1.0000 500 33351 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/129/129.seqs.fa -oc motifs/129 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 37 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 18500 N= 37 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.264 C 0.241 G 0.233 T 0.262 Background letter frequencies (from dataset with add-one prior applied): A 0.264 C 0.241 G 0.233 T 0.262 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 12 sites = 19 llr = 208 E-value = 9.8e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :::915:::97: pos.-specific C 2:619:::8:14 probability G 1::::1a1:121 matrix T 7a4::5:92::5 bits 2.1 * 1.9 * * 1.7 * * ** 1.5 * ** ** * Relative 1.3 * ** **** Entropy 1.1 **** **** (15.8 bits) 0.8 ***** ****** 0.6 ************ 0.4 ************ 0.2 ************ 0.0 ------------ Multilevel TTCACAGTCAAT consensus T T T GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 18337 130 1.49e-07 TCGGAAGGCC TTCACTGTCAAT CAATATCAAC 47389 156 1.49e-07 ATGCTTCTGC TTCACAGTCAAT GACCTGTGAG 26813 415 2.86e-07 GTTACCCAAA TTCACTGTCAAC AAGCCAACGG 54110 488 8.48e-07 GCGGAGCCCT TTCACAGTCAGC C 30145 473 1.70e-06 TCCCAATTGA TTCACAGTCACT GTTATCATCA 24792 157 1.96e-06 ATAACTCGGA TTTACTGTCAGC GATTTGCTTC 47610 170 2.48e-06 CAAAAATGCA TTCACAGTCGAT GGCAGCAATT 31605 250 2.87e-06 TCAAATTGAT TTTACTGTTAAT CGATTCATTG 45961 379 3.60e-06 GTGAAATCCA TTTACTGTTAAC AGTAAGACAA 37127 346 3.60e-06 TGTCGTATGT TTTACAGTTAAC GGTAGGAGAA 34371 1 4.96e-06 . TTTACTGTCGAT AGTGCTTGTG 49658 332 4.96e-06 TCGTGAATCC TTTCCAGTCAAT CCAAAAAACT 36666 240 5.55e-06 GACTGACGAC GTCACAGTCAGT TCATTTCATG 34933 150 6.53e-06 TACTATCGTG TTCACTGGCAAC GGACGGACGG 50540 171 1.10e-05 GGACTCCTCT CTCCCTGTCAAC CGTAGCGCCG 31748 100 1.20e-05 GGCACGAAAA CTCACTGTCAAG AACTCTGCCA 33257 258 1.49e-05 CAGGGCAGCG TTCAAAGTCAGT GCCAATGTTT 50125 176 1.60e-05 AACTCCAATT GTCACGGTCAAC TCGGGCAAAT 34521 253 3.31e-05 CCAAATACTA CTTACAGTTACT GTATCAATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 18337 1.5e-07 129_[+1]_359 47389 1.5e-07 155_[+1]_333 26813 2.9e-07 414_[+1]_74 54110 8.5e-07 487_[+1]_1 30145 1.7e-06 472_[+1]_16 24792 2e-06 156_[+1]_332 47610 2.5e-06 169_[+1]_319 31605 2.9e-06 249_[+1]_239 45961 3.6e-06 378_[+1]_110 37127 3.6e-06 345_[+1]_143 34371 5e-06 [+1]_488 49658 5e-06 331_[+1]_157 36666 5.5e-06 239_[+1]_249 34933 6.5e-06 149_[+1]_339 50540 1.1e-05 170_[+1]_318 31748 1.2e-05 99_[+1]_389 33257 1.5e-05 257_[+1]_231 50125 1.6e-05 175_[+1]_313 34521 3.3e-05 252_[+1]_236 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=12 seqs=19 18337 ( 130) TTCACTGTCAAT 1 47389 ( 156) TTCACAGTCAAT 1 26813 ( 415) TTCACTGTCAAC 1 54110 ( 488) TTCACAGTCAGC 1 30145 ( 473) TTCACAGTCACT 1 24792 ( 157) TTTACTGTCAGC 1 47610 ( 170) TTCACAGTCGAT 1 31605 ( 250) TTTACTGTTAAT 1 45961 ( 379) TTTACTGTTAAC 1 37127 ( 346) TTTACAGTTAAC 1 34371 ( 1) TTTACTGTCGAT 1 49658 ( 332) TTTCCAGTCAAT 1 36666 ( 240) GTCACAGTCAGT 1 34933 ( 150) TTCACTGGCAAC 1 50540 ( 171) CTCCCTGTCAAC 1 31748 ( 100) CTCACTGTCAAG 1 33257 ( 258) TTCAAAGTCAGT 1 50125 ( 176) GTCACGGTCAAC 1 34521 ( 253) CTTACAGTTACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 18093 bayes= 10.7918 E= 9.8e-007 -1089 -61 -114 149 -1089 -1089 -1089 193 -1089 139 -1089 49 176 -120 -1089 -1089 -232 197 -1089 -1089 84 -1089 -214 85 -1089 -1089 210 -1089 -1089 -1089 -214 185 -1089 171 -1089 -32 176 -1089 -114 -1089 137 -120 -15 -1089 -1089 80 -214 101 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 19 E= 9.8e-007 0.000000 0.157895 0.105263 0.736842 0.000000 0.000000 0.000000 1.000000 0.000000 0.631579 0.000000 0.368421 0.894737 0.105263 0.000000 0.000000 0.052632 0.947368 0.000000 0.000000 0.473684 0.000000 0.052632 0.473684 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.052632 0.947368 0.000000 0.789474 0.000000 0.210526 0.894737 0.000000 0.105263 0.000000 0.684211 0.105263 0.210526 0.000000 0.000000 0.421053 0.052632 0.526316 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- TT[CT]AC[AT]GT[CT]A[AG][TC] -------------------------------------------------------------------------------- Time 14.22 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 15 sites = 16 llr = 182 E-value = 2.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 24::38a93::86:: pos.-specific C ::45::::421:3:1 probability G 42:372::28921a9 matrix T 4463:::12::11:: bits 2.1 * 1.9 * * 1.7 * * * 1.5 ** ** ** Relative 1.3 *** ** ** Entropy 1.1 * **** ** ** (16.4 bits) 0.8 * **** *** ** 0.6 ****** *** ** 0.4 ******** ****** 0.2 ******** ****** 0.0 --------------- Multilevel TATCGAAACGGAAGG consensus GTCGA A C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- 30145 77 1.64e-07 CCGCAAAGAG TTCCGGAACGGAAGG GCAGCTGCCG 44989 132 7.78e-07 AATATTTAGA GACCAAAACGGATGG GGAGTTATTG 33257 303 7.78e-07 GCGAACGCAA GACGAAAATGGAAGG GAGCGGAGGA 18337 113 7.78e-07 CGGTAACAGG TGTCGAATCGGAAGG CCTTCACTGT 35973 134 1.70e-06 TGACTGTAAA AATTAAAAGGGAAGG AAGGCGCAAC 31748 2 1.70e-06 G GATCGAAAAGGACGC AAGAGCAATC 50440 233 2.05e-06 ACAGTCGGCC GTCGAAAATGGACGG TTGATTTTTC 37543 437 2.28e-06 TGGATCTCAC TATCGGAAGCGAAGG CGATGTAAGA 47610 235 2.51e-06 TTTGAAACAC ATTCAAAAAGGGAGG GACAAGATCG 45212 21 3.86e-06 AAGTCCCGCA GTTGGAAAAGCAAGG ATTAGCAGTG 34933 296 3.86e-06 ACTCGAAATC ATTCGAAACGGTCGG CCGCACAATC 33351 412 4.98e-06 AATAGGCGTA TGCTGAATCGGACGG AAATCCGAGG 49726 327 4.98e-06 ATGAGATTCA TACGGAAAGCGGAGG ACACGCTTTC 41721 69 5.40e-06 CCGCGCGCCC GTTTGAAAACGATGG GTTGTGACAT 54110 209 5.85e-06 AAATAGAAAG TGCTGAAATGGAAGC CCGGTAGTTT 38009 198 6.25e-06 TTTATCAAAG TATCGGAACGGGGGG CAACACTCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 30145 1.6e-07 76_[+2]_409 44989 7.8e-07 131_[+2]_354 33257 7.8e-07 302_[+2]_183 18337 7.8e-07 112_[+2]_373 35973 1.7e-06 133_[+2]_352 31748 1.7e-06 1_[+2]_484 50440 2e-06 232_[+2]_253 37543 2.3e-06 436_[+2]_49 47610 2.5e-06 234_[+2]_251 45212 3.9e-06 20_[+2]_465 34933 3.9e-06 295_[+2]_190 33351 5e-06 411_[+2]_74 49726 5e-06 326_[+2]_159 41721 5.4e-06 68_[+2]_417 54110 5.9e-06 208_[+2]_277 38009 6.2e-06 197_[+2]_288 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=15 seqs=16 30145 ( 77) TTCCGGAACGGAAGG 1 44989 ( 132) GACCAAAACGGATGG 1 33257 ( 303) GACGAAAATGGAAGG 1 18337 ( 113) TGTCGAATCGGAAGG 1 35973 ( 134) AATTAAAAGGGAAGG 1 31748 ( 2) GATCGAAAAGGACGC 1 50440 ( 233) GTCGAAAATGGACGG 1 37543 ( 437) TATCGGAAGCGAAGG 1 47610 ( 235) ATTCAAAAAGGGAGG 1 45212 ( 21) GTTGGAAAAGCAAGG 1 34933 ( 296) ATTCGAAACGGTCGG 1 33351 ( 412) TGCTGAATCGGACGG 1 49726 ( 327) TACGGAAAGCGGAGG 1 41721 ( 69) GTTTGAAAACGATGG 1 54110 ( 209) TGCTGAAATGGAAGC 1 38009 ( 198) TATCGGAACGGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 17982 bayes= 10.8705 E= 2.0e+001 -49 -1064 69 74 73 -1064 -31 52 -1064 86 -1064 110 -1064 105 10 -7 24 -1064 156 -1064 162 -1064 -31 -1064 192 -1064 -1064 -1064 173 -1064 -1064 -107 -8 64 -31 -48 -1064 -36 180 -1064 -1064 -195 201 -1064 151 -1064 -31 -206 109 5 -189 -107 -1064 -1064 210 -1064 -1064 -95 191 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 16 E= 2.0e+001 0.187500 0.000000 0.375000 0.437500 0.437500 0.000000 0.187500 0.375000 0.000000 0.437500 0.000000 0.562500 0.000000 0.500000 0.250000 0.250000 0.312500 0.000000 0.687500 0.000000 0.812500 0.000000 0.187500 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.000000 0.125000 0.250000 0.375000 0.187500 0.187500 0.000000 0.187500 0.812500 0.000000 0.000000 0.062500 0.937500 0.000000 0.750000 0.000000 0.187500 0.062500 0.562500 0.250000 0.062500 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.875000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [TG][AT][TC][CGT][GA]AAA[CA]GGA[AC]GG -------------------------------------------------------------------------------- Time 28.18 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 5 llr = 100 E-value = 1.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A ::46:22a6:82:26::2:a: pos.-specific C :462::::2::::8:2:42:: probability G a6::a88:2a26a:26a48:a matrix T :::2:::::::2::22::::: bits 2.1 * * * * * * 1.9 * * * * * * ** 1.7 * * * * * * ** 1.5 * * * * * * *** Relative 1.3 * **** ** ** * *** Entropy 1.1 *** **** ** ** * *** (28.9 bits) 0.8 *** **** ** ** * *** 0.6 ***************** *** 0.4 ********************* 0.2 ********************* 0.0 --------------------- Multilevel GGCAGGGAAGAGGCAGGCGAG consensus CAC AA C GA AGC GC sequence T G T TT A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 30145 233 1.42e-10 TTCCGTGCCC GGCTGGGAAGAAGCGGGGGAG AGAAAGATCT 33257 235 1.71e-10 AACAGTAAGT GCAAGGGAAGATGCAGGGCAG CGTTCAAAGT 38009 28 4.58e-10 TATGGCGACC GGCAGAAAAGAGGCATGCGAG GGAGTAAGAA 41721 6 6.17e-10 CAAAC GGAAGGGACGAGGCTCGAGAG CCGCAGAAAC 37127 125 1.14e-09 TGTATGGTGC GCCCGGGAGGGGGAAGGCGAG TGTTTTCGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 30145 1.4e-10 232_[+3]_247 33257 1.7e-10 234_[+3]_245 38009 4.6e-10 27_[+3]_452 41721 6.2e-10 5_[+3]_474 37127 1.1e-09 124_[+3]_355 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=5 30145 ( 233) GGCTGGGAAGAAGCGGGGGAG 1 33257 ( 235) GCAAGGGAAGATGCAGGGCAG 1 38009 ( 28) GGCAGAAAAGAGGCATGCGAG 1 41721 ( 6) GGAAGGGACGAGGCTCGAGAG 1 37127 ( 125) GCCCGGGAGGGGGAAGGCGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 17760 bayes= 12.0456 E= 1.6e+002 -897 -897 210 -897 -897 73 136 -897 60 131 -897 -897 118 -27 -897 -39 -897 -897 210 -897 -40 -897 178 -897 -40 -897 178 -897 192 -897 -897 -897 118 -27 -22 -897 -897 -897 210 -897 160 -897 -22 -897 -40 -897 136 -39 -897 -897 210 -897 -40 173 -897 -897 118 -897 -22 -39 -897 -27 136 -39 -897 -897 210 -897 -40 73 78 -897 -897 -27 178 -897 192 -897 -897 -897 -897 -897 210 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 5 E= 1.6e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.400000 0.600000 0.000000 0.000000 0.600000 0.200000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.200000 0.000000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.200000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.200000 0.000000 0.600000 0.200000 0.000000 0.000000 1.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.600000 0.000000 0.200000 0.200000 0.000000 0.200000 0.600000 0.200000 0.000000 0.000000 1.000000 0.000000 0.200000 0.400000 0.400000 0.000000 0.000000 0.200000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- G[GC][CA][ACT]G[GA][GA]A[ACG]G[AG][GAT]G[CA][AGT][GCT]G[CGA][GC]AG -------------------------------------------------------------------------------- Time 42.37 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 31605 6.32e-03 249_[+1(2.87e-06)]_239 31748 9.48e-05 1_[+2(1.70e-06)]_83_[+1(1.20e-05)]_\ 389 42932 3.61e-01 500 24792 9.75e-03 156_[+1(1.96e-06)]_332 37127 5.52e-08 124_[+3(1.14e-09)]_200_\ [+1(3.60e-06)]_143 21388 5.69e-02 500 37543 3.10e-02 220_[+2(3.11e-05)]_201_\ [+2(2.28e-06)]_49 47389 3.01e-03 155_[+1(1.49e-07)]_333 14191 5.68e-01 500 54787 3.82e-01 500 38009 1.18e-07 27_[+3(4.58e-10)]_149_\ [+2(6.25e-06)]_288 21961 8.64e-01 500 41721 1.81e-07 5_[+3(6.17e-10)]_1_[+3(6.69e-05)]_\ 20_[+2(5.40e-06)]_417 54110 9.37e-05 208_[+2(5.85e-06)]_246_\ [+2(5.93e-05)]_3_[+1(8.48e-07)]_1 18337 1.65e-06 112_[+2(7.78e-07)]_2_[+1(1.49e-07)]_\ 359 30145 2.62e-12 76_[+2(1.64e-07)]_141_\ [+3(1.42e-10)]_219_[+1(1.70e-06)]_16 49658 6.80e-03 331_[+1(4.96e-06)]_157 49726 2.73e-02 326_[+2(4.98e-06)]_159 23547 9.22e-01 500 33257 1.02e-10 234_[+3(1.71e-10)]_2_[+1(1.49e-05)]_\ 33_[+2(7.78e-07)]_183 50440 2.06e-03 232_[+2(2.05e-06)]_253 50540 4.84e-02 170_[+1(1.10e-05)]_318 34521 1.08e-01 252_[+1(3.31e-05)]_236 34522 3.92e-01 500 44989 4.84e-03 131_[+2(7.78e-07)]_354 26813 2.17e-05 130_[+3(8.01e-06)]_55_\ [+3(4.80e-05)]_187_[+1(2.86e-07)]_74 34933 3.72e-04 149_[+1(6.53e-06)]_134_\ [+2(3.86e-06)]_190 45961 5.30e-03 378_[+1(3.60e-06)]_110 35954 2.60e-01 500 35973 2.00e-03 133_[+2(1.70e-06)]_352 46333 2.91e-01 500 36666 4.19e-02 239_[+1(5.55e-06)]_249 34371 4.38e-02 [+1(4.96e-06)]_488 45212 1.02e-02 20_[+2(3.86e-06)]_465 47610 4.31e-05 169_[+1(2.48e-06)]_53_\ [+2(2.51e-06)]_251 50125 6.36e-02 175_[+1(1.60e-05)]_313 33351 1.67e-02 411_[+2(4.98e-06)]_74 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************