******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/137/137.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 42831 1.0000 500 51460 1.0000 500 46847 1.0000 500 21181 1.0000 500 47027 1.0000 500 21557 1.0000 500 47726 1.0000 500 47728 1.0000 500 9929 1.0000 500 43713 1.0000 500 10029 1.0000 500 23286 1.0000 500 25666 1.0000 500 34050 1.0000 500 11458 1.0000 500 35048 1.0000 500 35267 1.0000 500 27263 1.0000 500 27385 1.0000 500 35966 1.0000 500 46234 1.0000 500 43055 1.0000 500 43676 1.0000 500 45641 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/137/137.seqs.fa -oc motifs/137 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 24 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 12000 N= 24 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.271 C 0.237 G 0.226 T 0.266 Background letter frequencies (from dataset with add-one prior applied): A 0.271 C 0.237 G 0.226 T 0.266 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 16 sites = 24 llr = 220 E-value = 3.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 1:1:3:2::11:122: pos.-specific C 1::635:8:3:63223 probability G ::::44:125:11316 matrix T 7a94:18182935351 bits 2.1 1.9 1.7 * 1.5 * * Relative 1.3 ** * * Entropy 1.1 *** *** * (13.2 bits) 0.9 *** *** ** * 0.6 **** **** ** * 0.4 **** **** *** * 0.2 ************* ** 0.0 ---------------- Multilevel TTTCGCTCTGTCTGTG consensus TAGA GC TCTCC sequence C A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 35048 348 4.03e-10 TTTTGCCACA TTTCGGTCTGTCTGTG CGCACGATAC 21557 139 1.53e-07 AAGAAACAGC TTTCACACTGTCTTTG CATGCGAGAT 42831 310 1.77e-07 ATTTCGCAAA TTTCCGTCTGTCCATC TACACAGGTG 46234 451 2.96e-06 CTTGGTTTGT TTTTGTTCTGTCCCAG GATTTACTAT 43713 291 4.67e-06 GACATGTATT TTTTCGTCTGTCCTGC GCAACACACT 27263 470 8.03e-06 GCTGCGCCAT TTTTGGTCTCTTCTAC GGAGGTTTGT 27385 173 9.86e-06 GCCCTTGCTT TTTTGGACGGTTTGCG CTTCGTCTAC 47728 369 1.09e-05 TACTACGACT ATTCCGTCTCTCATTG ACGCAACAGG 47027 111 1.46e-05 ACCAGTGACG TTTCATTCTATTTGCG TTTCCATTTG 46847 454 1.46e-05 CTAGTACATC CTTCGCTCGTTCTCTC TTCTCGCTTA 47726 39 2.12e-05 TGGTTCTGAG CTTCCGTGGGTCCGTG ACCAATCGCT 51460 181 2.12e-05 TAAGAGCCAT TTTCACTGTATCTTCG CTTACTGTCG 21181 23 2.33e-05 CTAACAGTAA TTACACTTTCTCCTTG AAAATAGAAA 11458 73 2.54e-05 ACAATTTTGC TTACGCTCTTTCTACC CAAATGTTTA 23286 53 2.78e-05 AAAGCATCAT TTTCACACTCATTCTG GATACAAGAT 43676 93 3.03e-05 ATGAACCTAA TTTCAGTCTGTGAGAC GATATGCGGT 43055 319 3.03e-05 GAAAAAGCTG CTTCCGTCTGTTCATT GTCCGTAACA 25666 208 3.59e-05 TTAAAATGCC TTTTGCTTTCTTTCGG ACAACAAGTA 35267 377 4.25e-05 CACACATCTC TCTCTCTCTCTCTCTG TCAACCTCCT 34050 251 4.61e-05 GGGCATAAGT ATTTAGTCGGTGTATG CACTTTGACA 35966 102 1.40e-04 ATTCGGGACC GTTTGCTCTTTCGGCC CAAAACGGGG 45641 277 1.50e-04 GAAGTTTTCA TTTTACACTTACTGTT AATACATCCA 9929 111 1.95e-04 GGAACCTTGA TTCTGTACGGTCCATG TCAGACGGTT 10029 21 2.07e-04 CCTTAACGGG ATTCCCTTTCTTGGAG CTGTTCTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 35048 4e-10 347_[+1]_137 21557 1.5e-07 138_[+1]_346 42831 1.8e-07 309_[+1]_175 46234 3e-06 450_[+1]_34 43713 4.7e-06 290_[+1]_194 27263 8e-06 469_[+1]_15 27385 9.9e-06 172_[+1]_312 47728 1.1e-05 368_[+1]_116 47027 1.5e-05 110_[+1]_374 46847 1.5e-05 453_[+1]_31 47726 2.1e-05 38_[+1]_446 51460 2.1e-05 180_[+1]_304 21181 2.3e-05 22_[+1]_462 11458 2.5e-05 72_[+1]_412 23286 2.8e-05 52_[+1]_432 43676 3e-05 92_[+1]_392 43055 3e-05 318_[+1]_166 25666 3.6e-05 207_[+1]_277 35267 4.2e-05 376_[+1]_108 34050 4.6e-05 250_[+1]_234 35966 0.00014 101_[+1]_383 45641 0.00015 276_[+1]_208 9929 0.00019 110_[+1]_374 10029 0.00021 20_[+1]_464 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=16 seqs=24 35048 ( 348) TTTCGGTCTGTCTGTG 1 21557 ( 139) TTTCACACTGTCTTTG 1 42831 ( 310) TTTCCGTCTGTCCATC 1 46234 ( 451) TTTTGTTCTGTCCCAG 1 43713 ( 291) TTTTCGTCTGTCCTGC 1 27263 ( 470) TTTTGGTCTCTTCTAC 1 27385 ( 173) TTTTGGACGGTTTGCG 1 47728 ( 369) ATTCCGTCTCTCATTG 1 47027 ( 111) TTTCATTCTATTTGCG 1 46847 ( 454) CTTCGCTCGTTCTCTC 1 47726 ( 39) CTTCCGTGGGTCCGTG 1 51460 ( 181) TTTCACTGTATCTTCG 1 21181 ( 23) TTACACTTTCTCCTTG 1 11458 ( 73) TTACGCTCTTTCTACC 1 23286 ( 53) TTTCACACTCATTCTG 1 43676 ( 93) TTTCAGTCTGTGAGAC 1 43055 ( 319) CTTCCGTCTGTTCATT 1 25666 ( 208) TTTTGCTTTCTTTCGG 1 35267 ( 377) TCTCTCTCTCTCTCTG 1 34050 ( 251) ATTTAGTCGGTGTATG 1 35966 ( 102) GTTTGCTCTTTCGGCC 1 45641 ( 277) TTTTACACTTACTGTT 1 9929 ( 111) TTCTGTACGGTCCATG 1 10029 ( 21) ATTCCCTTTCTTGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 11640 bayes= 8.91886 E= 3.2e+000 -112 -92 -244 141 -1123 -251 -1123 185 -170 -251 -1123 172 -1123 140 -1123 49 30 8 73 -267 -1123 95 88 -109 -38 -1123 -1123 157 -1123 174 -144 -109 -1123 -1123 -12 157 -170 30 102 -67 -170 -1123 -1123 178 -1123 140 -144 13 -170 49 -144 91 -38 -19 56 -9 -70 -19 -144 103 -1123 30 147 -167 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 24 E= 3.2e+000 0.125000 0.125000 0.041667 0.708333 0.000000 0.041667 0.000000 0.958333 0.083333 0.041667 0.000000 0.875000 0.000000 0.625000 0.000000 0.375000 0.333333 0.250000 0.375000 0.041667 0.000000 0.458333 0.416667 0.125000 0.208333 0.000000 0.000000 0.791667 0.000000 0.791667 0.083333 0.125000 0.000000 0.000000 0.208333 0.791667 0.083333 0.291667 0.458333 0.166667 0.083333 0.000000 0.000000 0.916667 0.000000 0.625000 0.083333 0.291667 0.083333 0.333333 0.083333 0.500000 0.208333 0.208333 0.333333 0.250000 0.166667 0.208333 0.083333 0.541667 0.000000 0.291667 0.625000 0.083333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- TTT[CT][GAC][CG][TA]C[TG][GC]T[CT][TC][GTAC][TC][GC] -------------------------------------------------------------------------------- Time 6.05 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 12 sites = 24 llr = 205 E-value = 8.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 26422a6368aa pos.-specific C 63:84:432::: probability G 2:4:4::423:: matrix T ::2::::::::: bits 2.1 1.9 ** 1.7 * ** 1.5 * ** Relative 1.3 * * ** Entropy 1.1 * ** *** (12.3 bits) 0.9 * * ** *** 0.6 * **** **** 0.4 ************ 0.2 ************ 0.0 ------------ Multilevel CAGCGAAGAAAA consensus ACA C CACG sequence T A CG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 46234 105 6.95e-07 TGAGGAAGTT CAGCGACGAAAA ATCGATCGAC 35966 368 2.83e-06 ATCCCGTTTT CCACCAAGAAAA TCGCGACGGA 27263 419 3.19e-06 GCCTACCGCG CAACCACCAAAA CAAAAACACA 11458 121 5.47e-06 ATAACACAAA AAGCGAAGAAAA ACATCAGATT 42831 198 1.45e-05 GCGGCGAATC CCTCCAAAAAAA TTCATATATA 43676 306 2.19e-05 GCTAGATCAA CCACCAAAGAAA ATTCATCAGT 47728 207 2.19e-05 GGCTGAAGAA CAGCGAAAGGAA CAAATAGCTA 43055 263 2.54e-05 TTTTTGCAGA AAACGACCAAAA CGAAAAACGG 27385 360 4.00e-05 GTGGGCACAT CCGCAAACGAAA ATGTTCATCT 51460 340 4.00e-05 CCCCACCACG CATCCACAAGAA GACTGACAGG 45641 314 4.39e-05 CCAAAATTTC CCGAGAACAAAA ACATACACAG 43713 326 4.39e-05 TCTACCCCAG GAACCAAGCAAA GACGCGACAC 21181 442 4.86e-05 CGAGACTGGA ACGCGAAGCAAA ACTAACACGA 35048 460 5.29e-05 TCTGGTAGTA GAGCAACCAAAA TAACACAGTG 34050 275 5.86e-05 TGCACTTTGA CAAAGAAGGAAA GACGCACGGA 21557 372 5.86e-05 CAGCAGCAAT CAAAAAAGAAAA GTACTCATAC 23286 261 6.54e-05 GCCTCTCGCA GAGCCACACAAA AGAACATACC 47027 90 7.57e-05 ATACGGCAAA ACACGAAAGAAA CCAGTGACGT 25666 387 1.05e-04 CTAACTGCGA CGTCCAAGAAAA ATCGTACAGC 46847 162 1.12e-04 TGCCTGTGAA CAACAACACGAA GTTTGGACTG 47726 406 1.46e-04 CGTAGAGAGA GCGAGACGAAAA GGACACACCG 10029 473 1.79e-04 TGGCGGGTGA AATCCAACCGAA TCAGCCAGGC 9929 477 2.84e-04 GCAACAGCAA CAGCAGAAAGAA ACGACGGATG 35267 447 3.08e-04 TTGCGTAGTG TATCGACCAGAA TCCACTACTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 46234 6.9e-07 104_[+2]_384 35966 2.8e-06 367_[+2]_121 27263 3.2e-06 418_[+2]_70 11458 5.5e-06 120_[+2]_368 42831 1.4e-05 197_[+2]_291 43676 2.2e-05 305_[+2]_183 47728 2.2e-05 206_[+2]_282 43055 2.5e-05 262_[+2]_226 27385 4e-05 359_[+2]_129 51460 4e-05 339_[+2]_149 45641 4.4e-05 313_[+2]_175 43713 4.4e-05 325_[+2]_163 21181 4.9e-05 441_[+2]_47 35048 5.3e-05 459_[+2]_29 34050 5.9e-05 274_[+2]_214 21557 5.9e-05 371_[+2]_117 23286 6.5e-05 260_[+2]_228 47027 7.6e-05 89_[+2]_399 25666 0.00011 386_[+2]_102 46847 0.00011 161_[+2]_327 47726 0.00015 405_[+2]_83 10029 0.00018 472_[+2]_16 9929 0.00028 476_[+2]_12 35267 0.00031 446_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=12 seqs=24 46234 ( 105) CAGCGACGAAAA 1 35966 ( 368) CCACCAAGAAAA 1 27263 ( 419) CAACCACCAAAA 1 11458 ( 121) AAGCGAAGAAAA 1 42831 ( 198) CCTCCAAAAAAA 1 43676 ( 306) CCACCAAAGAAA 1 47728 ( 207) CAGCGAAAGGAA 1 43055 ( 263) AAACGACCAAAA 1 27385 ( 360) CCGCAAACGAAA 1 51460 ( 340) CATCCACAAGAA 1 45641 ( 314) CCGAGAACAAAA 1 43713 ( 326) GAACCAAGCAAA 1 21181 ( 442) ACGCGAAGCAAA 1 35048 ( 460) GAGCAACCAAAA 1 34050 ( 275) CAAAGAAGGAAA 1 21557 ( 372) CAAAAAAGAAAA 1 23286 ( 261) GAGCCACACAAA 1 47027 ( 90) ACACGAAAGAAA 1 25666 ( 387) CGTCCAAGAAAA 1 46847 ( 162) CAACAACACGAA 1 47726 ( 406) GCGAGACGAAAA 1 10029 ( 473) AATCCAACCGAA 1 9929 ( 477) CAGCAGAAAGAA 1 35267 ( 447) TATCGACCAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 11736 bayes= 8.93074 E= 8.9e+000 -38 130 -44 -267 121 49 -244 -1123 47 -1123 88 -35 -70 181 -1123 -1123 -38 66 88 -1123 182 -1123 -244 -1123 121 66 -1123 -1123 30 30 73 -1123 111 -19 -12 -1123 147 -1123 15 -1123 188 -1123 -1123 -1123 188 -1123 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 24 E= 8.9e+000 0.208333 0.583333 0.166667 0.041667 0.625000 0.333333 0.041667 0.000000 0.375000 0.000000 0.416667 0.208333 0.166667 0.833333 0.000000 0.000000 0.208333 0.375000 0.416667 0.000000 0.958333 0.000000 0.041667 0.000000 0.625000 0.375000 0.000000 0.000000 0.333333 0.291667 0.375000 0.000000 0.583333 0.208333 0.208333 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [CA][AC][GAT]C[GCA]A[AC][GAC][ACG][AG]AA -------------------------------------------------------------------------------- Time 11.81 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 16 sites = 9 llr = 122 E-value = 2.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A ::::23:4:1::2:8: pos.-specific C 7:a62:a67:7::7:1 probability G 3:::64::223a4::9 matrix T :a:4:2::17::332: bits 2.1 * * * 1.9 ** * * 1.7 ** * * * 1.5 ** * * * Relative 1.3 *** * ** * Entropy 1.1 **** ** ** *** (19.6 bits) 0.9 **** *** ** *** 0.6 ***** ****** *** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel CTCCGGCCCTCGGCAG consensus G TAA AGGG TTT sequence CT A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 47726 293 3.67e-10 GTTGTCGGTA CTCCGGCACTCGGCAG GTAAAATACT 35267 26 1.36e-07 GGGAGAACAA CTCCCGCACGGGGCAG TTCGAATGTG 21181 139 2.35e-07 TAGGCCCTCT CTCTGGCACACGGTAG GGAGAACAGA 43713 265 2.59e-07 TATCGTGTTT CTCCAACCGTCGACAG GACATGTATT 35966 311 3.78e-07 AACTAGTCTT GTCCGTCCTTCGTCAG TCTCGGGACC 27263 152 3.78e-07 TTGGCAGCTA CTCCAGCACTGGTCTG TACGCCGTCC 25666 301 3.78e-07 AATTGCCATT GTCTGACCGGCGTCAG ACTGAGATCC 27385 223 4.88e-07 GTCGCCGCTC GTCTGTCCCTGGATAG TCGCCGTTCA 11458 320 2.09e-06 CAACTCTTTT CTCTCACCCTCGGTTC AGGTTTTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 47726 3.7e-10 292_[+3]_192 35267 1.4e-07 25_[+3]_459 21181 2.3e-07 138_[+3]_346 43713 2.6e-07 264_[+3]_220 35966 3.8e-07 310_[+3]_174 27263 3.8e-07 151_[+3]_333 25666 3.8e-07 300_[+3]_184 27385 4.9e-07 222_[+3]_262 11458 2.1e-06 319_[+3]_165 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=16 seqs=9 47726 ( 293) CTCCGGCACTCGGCAG 1 35267 ( 26) CTCCCGCACGGGGCAG 1 21181 ( 139) CTCTGGCACACGGTAG 1 43713 ( 265) CTCCAACCGTCGACAG 1 35966 ( 311) GTCCGTCCTTCGTCAG 1 27263 ( 152) CTCCAGCACTGGTCTG 1 25666 ( 301) GTCTGACCGGCGTCAG 1 27385 ( 223) GTCTGTCCCTGGATAG 1 11458 ( 320) CTCTCACCCTCGGTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 11640 bayes= 10.4702 E= 2.8e+002 -982 149 56 -982 -982 -982 -982 191 -982 207 -982 -982 -982 123 -982 74 -29 -9 130 -982 30 -982 98 -26 -982 207 -982 -982 71 123 -982 -982 -982 149 -2 -126 -128 -982 -2 132 -982 149 56 -982 -982 -982 215 -982 -29 -982 98 32 -982 149 -982 32 152 -982 -982 -26 -982 -109 198 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 9 E= 2.8e+002 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.555556 0.000000 0.444444 0.222222 0.222222 0.555556 0.000000 0.333333 0.000000 0.444444 0.222222 0.000000 1.000000 0.000000 0.000000 0.444444 0.555556 0.000000 0.000000 0.000000 0.666667 0.222222 0.111111 0.111111 0.000000 0.222222 0.666667 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.222222 0.000000 0.444444 0.333333 0.000000 0.666667 0.000000 0.333333 0.777778 0.000000 0.000000 0.222222 0.000000 0.111111 0.888889 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [CG]TC[CT][GAC][GAT]C[CA][CG][TG][CG]G[GTA][CT][AT]G -------------------------------------------------------------------------------- Time 17.61 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 42831 1.63e-05 197_[+2(1.45e-05)]_100_\ [+1(1.77e-07)]_175 51460 5.62e-03 180_[+1(2.12e-05)]_143_\ [+2(4.00e-05)]_149 46847 6.92e-03 453_[+1(1.46e-05)]_31 21181 5.05e-06 22_[+1(2.33e-05)]_100_\ [+3(2.35e-07)]_287_[+2(4.86e-05)]_47 47027 6.63e-03 89_[+2(7.57e-05)]_9_[+1(1.46e-05)]_\ 374 21557 7.59e-05 138_[+1(1.53e-07)]_217_\ [+2(5.86e-05)]_117 47726 3.58e-08 38_[+1(2.12e-05)]_238_\ [+3(3.67e-10)]_192 47728 1.03e-03 206_[+2(2.19e-05)]_150_\ [+1(1.09e-05)]_116 9929 9.47e-02 500 43713 1.20e-06 264_[+3(2.59e-07)]_10_\ [+1(4.67e-06)]_19_[+2(4.39e-05)]_163 10029 1.37e-01 500 23286 5.27e-03 52_[+1(2.78e-05)]_192_\ [+2(6.54e-05)]_228 25666 2.21e-05 207_[+1(3.59e-05)]_77_\ [+3(3.78e-07)]_85_[+3(5.97e-05)]_83 34050 1.28e-03 250_[+1(4.61e-05)]_8_[+2(5.86e-05)]_\ 54_[+3(5.97e-05)]_144 11458 5.52e-06 72_[+1(2.54e-05)]_32_[+2(5.47e-06)]_\ 187_[+3(2.09e-06)]_165 35048 2.69e-07 347_[+1(4.03e-10)]_96_\ [+2(5.29e-05)]_29 35267 2.56e-05 25_[+3(1.36e-07)]_335_\ [+1(4.25e-05)]_108 27263 2.60e-07 151_[+3(3.78e-07)]_251_\ [+2(3.19e-06)]_39_[+1(8.03e-06)]_15 27385 3.81e-06 172_[+1(9.86e-06)]_34_\ [+3(4.88e-07)]_121_[+2(4.00e-05)]_129 35966 3.00e-06 310_[+3(3.78e-07)]_41_\ [+2(2.83e-06)]_121 46234 2.12e-05 104_[+2(6.95e-07)]_334_\ [+1(2.96e-06)]_34 43055 6.42e-04 262_[+2(2.54e-05)]_44_\ [+1(3.03e-05)]_81_[+3(9.16e-05)]_69 43676 3.19e-03 92_[+1(3.03e-05)]_197_\ [+2(2.19e-05)]_183 45641 3.54e-03 247_[+3(8.65e-05)]_50_\ [+2(4.39e-05)]_175 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************