******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/142/142.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 31768 1.0000 500 42754 1.0000 500 24739 1.0000 500 31994 1.0000 500 13088 1.0000 500 46712 1.0000 500 47181 1.0000 500 21485 1.0000 500 47412 1.0000 500 47492 1.0000 500 47999 1.0000 500 48010 1.0000 500 14715 1.0000 500 14917 1.0000 500 22525 1.0000 500 39247 1.0000 500 22666 1.0000 500 43431 1.0000 500 18246 1.0000 500 50738 1.0000 500 23371 1.0000 500 16074 1.0000 500 30572 1.0000 500 30967 1.0000 500 23959 1.0000 500 26346 1.0000 500 26363 1.0000 500 34538 1.0000 500 54376 1.0000 500 12238 1.0000 500 35513 1.0000 500 48198 1.0000 500 48686 1.0000 500 43690 1.0000 500 46766 1.0000 500 49738 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/142/142.seqs.fa -oc motifs/142 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 36 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 18000 N= 36 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.247 C 0.261 G 0.231 T 0.261 Background letter frequencies (from dataset with add-one prior applied): A 0.247 C 0.261 G 0.231 T 0.261 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 12 sites = 21 llr = 214 E-value = 2.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A ::a:9::1a62: pos.-specific C :5:a1::7:2:2 probability G 22:::a:2:223 matrix T 83::::a:::64 bits 2.1 * * 1.9 ** * 1.7 ** ** * 1.5 ***** * Relative 1.3 * ***** * Entropy 1.1 * ***** * (14.7 bits) 0.8 * ***** * 0.6 * ********* 0.4 *********** 0.2 ************ 0.0 ------------ Multilevel TCACAGTCAATT consensus T GGG sequence G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 35513 182 7.09e-08 AACCGAGCGT TCACAGTCAATT CAATTCTTTC 42754 144 2.76e-07 AGAATAGGAT TTACAGTCAATT CTGAGAGAAA 39247 257 5.30e-07 TTTGGCACTG TCACAGTCAGTT TGTACCATTC 31768 65 5.30e-07 GCGAATTTGT TCACAGTCAAGT AAACTAACAG 22525 412 1.04e-06 TGGCCACTAC TCACAGTCACTT TCCTTGCTTT 18246 315 3.37e-06 CAACTTAAAG TTACAGTCAGTC AATGCAATGA 14917 115 3.72e-06 ACATCAATCC TGACAGTGAATG CATTGATAGA 48198 100 4.08e-06 GTTTTTAATG TCACAGTCAATA GCATAGTTTC 26363 204 6.36e-06 ATTGTCCACG TCACAGTCAGAC AGACGAAAGG 31994 130 8.46e-06 AGGCGACGTC TCACCGTCAAGT ATGTCATGAG 46766 77 9.15e-06 TAGACGTGAA TGACAGTGAAGG GGAATGAATA 43690 114 9.15e-06 TGATATTGAT TGACAGTGAAGG CCTTCCGATT 49738 197 1.13e-05 CGAGGCTCAC TCACAGTAACTT ACGGGTGCCC 30572 396 1.81e-05 GGACCGAAAC GGACAGTGAATC GGCCCGATCG 48010 477 2.10e-05 CTTTCTGTGT GTACAGTCAGAT CGCTCGCACC 22666 430 2.61e-05 ACATTTACAG TTACAGTTAGTT CCTATTCCAC 21485 270 2.97e-05 CTAGGAAGGC TTCCAGTCAATC TCGAGTACCG 47181 121 2.97e-05 CGAAAAGACG TCAGAGTCAAAG TCTTGATGCC 34538 88 3.35e-05 TTCAGAGTCT GGACCGTCAATC GTTTGGGTGC 47412 412 4.79e-05 CTTGTTCCTT TTACAGTAACAG CTTCTGATCC 43431 460 6.47e-05 ACCATCGACG GCACCGTCACGG CGGTGTAAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 35513 7.1e-08 181_[+1]_307 42754 2.8e-07 143_[+1]_345 39247 5.3e-07 256_[+1]_232 31768 5.3e-07 64_[+1]_424 22525 1e-06 411_[+1]_77 18246 3.4e-06 314_[+1]_174 14917 3.7e-06 114_[+1]_374 48198 4.1e-06 99_[+1]_389 26363 6.4e-06 203_[+1]_285 31994 8.5e-06 129_[+1]_359 46766 9.2e-06 76_[+1]_412 43690 9.2e-06 113_[+1]_375 49738 1.1e-05 196_[+1]_292 30572 1.8e-05 395_[+1]_93 48010 2.1e-05 476_[+1]_12 22666 2.6e-05 429_[+1]_59 21485 3e-05 269_[+1]_219 47181 3e-05 120_[+1]_368 34538 3.4e-05 87_[+1]_401 47412 4.8e-05 411_[+1]_77 43431 6.5e-05 459_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=12 seqs=21 35513 ( 182) TCACAGTCAATT 1 42754 ( 144) TTACAGTCAATT 1 39247 ( 257) TCACAGTCAGTT 1 31768 ( 65) TCACAGTCAAGT 1 22525 ( 412) TCACAGTCACTT 1 18246 ( 315) TTACAGTCAGTC 1 14917 ( 115) TGACAGTGAATG 1 48198 ( 100) TCACAGTCAATA 1 26363 ( 204) TCACAGTCAGAC 1 31994 ( 130) TCACCGTCAAGT 1 46766 ( 77) TGACAGTGAAGG 1 43690 ( 114) TGACAGTGAAGG 1 49738 ( 197) TCACAGTAACTT 1 30572 ( 396) GGACAGTGAATC 1 48010 ( 477) GTACAGTCAGAT 1 22666 ( 430) TTACAGTTAGTT 1 21485 ( 270) TTCCAGTCAATC 1 47181 ( 121) TCAGAGTCAAAG 1 34538 ( 88) GGACCGTCAATC 1 47412 ( 412) TTACAGTAACAG 1 43431 ( 460) GCACCGTCACGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 17604 bayes= 10.6968 E= 2.1e-004 -1104 -1104 -28 163 -1104 87 4 13 195 -245 -1104 -1104 -1104 187 -227 -1104 180 -87 -1104 -1104 -1104 -1104 211 -1104 -1104 -1104 -1104 194 -137 135 -28 -245 202 -1104 -1104 -1104 121 -46 4 -1104 -37 -1104 4 113 -237 -13 31 71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 21 E= 2.1e-004 0.000000 0.000000 0.190476 0.809524 0.000000 0.476190 0.238095 0.285714 0.952381 0.047619 0.000000 0.000000 0.000000 0.952381 0.047619 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.095238 0.666667 0.190476 0.047619 1.000000 0.000000 0.000000 0.000000 0.571429 0.190476 0.238095 0.000000 0.190476 0.000000 0.238095 0.571429 0.047619 0.238095 0.285714 0.428571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- T[CTG]ACAGTCA[AG][TG][TGC] -------------------------------------------------------------------------------- Time 13.17 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 20 sites = 23 llr = 253 E-value = 3.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 7229a139579133583357 pos.-specific C 3861:42122:36422472: probability G ::2::24:3:13:33:213: matrix T :::::31::::21:::1::3 bits 2.1 1.9 1.7 * 1.5 ** * * Relative 1.3 * ** * * Entropy 1.1 * ** * ** * (15.9 bits) 0.8 ** ** * ** * * * 0.6 ***** **** * ** *** 0.4 ***** **** **** *** 0.2 ***** ***** **** *** 0.0 -------------------- Multilevel ACCAACGAAAACCCAACCAA consensus CAA TA GC GAAG AAGT sequence G G C T G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 47492 329 4.53e-10 TTTTTGTGCA ACCAACGAAAAACGAACCAA GTGGAGGCGG 46766 121 5.62e-08 GTGTAGTAGA ACCAATGAGAACCGACACGA CGAATCGTGT 22666 300 5.62e-08 CTACACCGCT ACCAACAACAACAACAACAA CAACAACGAC 26346 329 7.68e-08 ATACGCCACA AACAACAACAACCCAACAAA CAACAAACAA 22525 186 8.92e-08 CAGCCTCGTG ACAAACAACAACCAAACCGT GGTTCCCGTC 48198 65 1.12e-06 GTGCCGTAAT ACCAAGGAAAAGTCACGCCA TCGATGTTTT 42754 368 1.88e-06 TTTTGCGGCC CAGAATGAACAGCAAAAAAA TCCCACTCTT 48686 328 2.08e-06 AGCCGTCTAC ACCAACCAGAAAACGAGCCT CTTCGCCACG 30967 296 2.52e-06 AGGAACATCA ACCAACGAAAAACCGACGGG AGAGGGACGG 34538 120 3.67e-06 CGGTAGCCTG TCAAAGGACAACCGCACCAA AAAAGTCGAG 16074 435 4.39e-06 CAAAAAGACC ACCCCCAAAAAGACGACCAA GAAAACTGCT 24739 195 4.39e-06 CTCCGTATCA ACGAAGGAAAGTTACACCAA TCACTGTTTA 47412 466 4.79e-06 ATTGCTCTCT ACGAATCAAAATAAGATAGT TTCTGCAGTT 14715 273 5.22e-06 GGATAGACTA CCAAACGAACATCACATCCA GCAGCAGCGC 54376 260 6.19e-06 CTCAACGGTC CACAAGTCAAAGCCAACCAT CTCGCTTCCC 35513 336 6.73e-06 AGAGGAATCG ACAAATACACACCAACACGA AATAGTTCCA 30572 354 7.31e-06 ACAAAGCAAA CCCCACTACAATAGGAACAA CCAACCTCGT 13088 252 7.92e-06 GGTGGACACC ACCAAAGCGCAGACAACGAA GCGTTTCGTC 48010 261 9.29e-06 GCTTGGGACG ACGAAAGAGGAGACGAGAAA AACTCTCCTG 43431 50 1.81e-05 CGTCGGTTTG CCGAAACAGAGTCAAAGAGA CGGCACACAC 31994 94 1.81e-05 TCTTTTCCAT CACCAGCAGAAGAGAAAAGA GCCGGCAGGC 47999 480 1.94e-05 CGTTGTGATC ACAAATTAAAACCCGTTCGT C 14917 39 4.18e-05 CTGCGCGCCA AACAATAAACGCCGACGCCT GATCCAAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 47492 4.5e-10 328_[+2]_152 46766 5.6e-08 120_[+2]_360 22666 5.6e-08 299_[+2]_181 26346 7.7e-08 328_[+2]_152 22525 8.9e-08 185_[+2]_295 48198 1.1e-06 64_[+2]_416 42754 1.9e-06 367_[+2]_113 48686 2.1e-06 327_[+2]_153 30967 2.5e-06 295_[+2]_185 34538 3.7e-06 119_[+2]_361 16074 4.4e-06 434_[+2]_46 24739 4.4e-06 194_[+2]_286 47412 4.8e-06 465_[+2]_15 14715 5.2e-06 272_[+2]_208 54376 6.2e-06 259_[+2]_221 35513 6.7e-06 335_[+2]_145 30572 7.3e-06 353_[+2]_127 13088 7.9e-06 251_[+2]_229 48010 9.3e-06 260_[+2]_220 43431 1.8e-05 49_[+2]_431 31994 1.8e-05 93_[+2]_387 47999 1.9e-05 479_[+2]_1 14917 4.2e-05 38_[+2]_442 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=20 seqs=23 47492 ( 329) ACCAACGAAAAACGAACCAA 1 46766 ( 121) ACCAATGAGAACCGACACGA 1 22666 ( 300) ACCAACAACAACAACAACAA 1 26346 ( 329) AACAACAACAACCCAACAAA 1 22525 ( 186) ACAAACAACAACCAAACCGT 1 48198 ( 65) ACCAAGGAAAAGTCACGCCA 1 42754 ( 368) CAGAATGAACAGCAAAAAAA 1 48686 ( 328) ACCAACCAGAAAACGAGCCT 1 30967 ( 296) ACCAACGAAAAACCGACGGG 1 34538 ( 120) TCAAAGGACAACCGCACCAA 1 16074 ( 435) ACCCCCAAAAAGACGACCAA 1 24739 ( 195) ACGAAGGAAAGTTACACCAA 1 47412 ( 466) ACGAATCAAAATAAGATAGT 1 14715 ( 273) CCAAACGAACATCACATCCA 1 54376 ( 260) CACAAGTCAAAGCCAACCAT 1 35513 ( 336) ACAAATACACACCAACACGA 1 30572 ( 354) CCCCACTACAATAGGAACAA 1 13088 ( 252) ACCAAAGCGCAGACAACGAA 1 48010 ( 261) ACGAAAGAGGAGACGAGAAA 1 43431 ( 50) CCGAAACAGAGTCAAAGAGA 1 31994 ( 94) CACCAGCAGAAGAGAAAAGA 1 47999 ( 480) ACAAATTAAAACCCGTTCGT 1 14917 ( 39) AACAATAAACGCCGACGCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 17316 bayes= 9.95735 E= 3.3e-001 150 0 -1117 -258 -18 158 -1117 -1117 -18 111 -9 -1117 182 -100 -1117 -1117 196 -258 -1117 -1117 -92 58 -9 0 8 -59 91 -100 182 -100 -1117 -1117 108 -27 18 -1117 158 -27 -241 -1117 182 -1117 -82 -1117 -92 41 40 -27 50 111 -1117 -159 50 58 18 -1117 108 -59 40 -1117 167 -59 -1117 -258 8 58 -9 -100 8 132 -141 -1117 96 -59 59 -1117 150 -1117 -241 0 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 23 E= 3.3e-001 0.695652 0.260870 0.000000 0.043478 0.217391 0.782609 0.000000 0.000000 0.217391 0.565217 0.217391 0.000000 0.869565 0.130435 0.000000 0.000000 0.956522 0.043478 0.000000 0.000000 0.130435 0.391304 0.217391 0.260870 0.260870 0.173913 0.434783 0.130435 0.869565 0.130435 0.000000 0.000000 0.521739 0.217391 0.260870 0.000000 0.739130 0.217391 0.043478 0.000000 0.869565 0.000000 0.130435 0.000000 0.130435 0.347826 0.304348 0.217391 0.347826 0.565217 0.000000 0.086957 0.347826 0.391304 0.260870 0.000000 0.521739 0.173913 0.304348 0.000000 0.782609 0.173913 0.000000 0.043478 0.260870 0.391304 0.217391 0.130435 0.260870 0.652174 0.086957 0.000000 0.478261 0.173913 0.347826 0.000000 0.695652 0.000000 0.043478 0.260870 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [AC][CA][CAG]AA[CTG][GA]A[AGC][AC]A[CGT][CA][CAG][AG]A[CAG][CA][AG][AT] -------------------------------------------------------------------------------- Time 26.29 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 15 sites = 9 llr = 125 E-value = 7.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 361::91::::a::: pos.-specific C :16:::9::4:::22 probability G 7:1:8::2a:9:8:8 matrix T :32a21:8:61:28: bits 2.1 * * 1.9 * * * 1.7 * * ** 1.5 * ** * ** Relative 1.3 * ****** ***** Entropy 1.1 * ****** ***** (20.0 bits) 0.8 * ************ 0.6 ** ************ 0.4 ** ************ 0.2 *************** 0.0 --------------- Multilevel GACTGACTGTGAGTG consensus ATT T G C TCC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- 47492 412 1.45e-09 ACCAGGGATT GACTGACTGCGAGTG TTATTCTCTC 48686 67 2.16e-08 CGGCCGACGA GTTTGACTGCGAGTG GTAGTTTCCA 47999 54 5.40e-08 GTGCGTCGAC GATTGACTGTGATTG GGTGGGTGGG 31768 32 1.61e-07 AGTGAGCATA GTCTGACTGTGAGCC CCCATTTCGC 47412 160 2.03e-07 TCCTGGATCG AAATGACGGCGAGTG ATCCCCACGA 30572 60 2.29e-07 GGGCACCCGT AAGTTACTGTGAGTG AGCCTCGGTC 24739 106 7.94e-07 TGCTTTAGTT GACTGTCTGCGATCG TTGTAGATTA 30967 159 8.62e-07 GTGAATCGAT GTCTGAAGGTGAGTC TCGTACAATA 26346 126 1.66e-06 TTGGAATCCT ACCTTACTGTTAGTG CCATATATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 47492 1.4e-09 411_[+3]_74 48686 2.2e-08 66_[+3]_419 47999 5.4e-08 53_[+3]_432 31768 1.6e-07 31_[+3]_454 47412 2e-07 159_[+3]_326 30572 2.3e-07 59_[+3]_426 24739 7.9e-07 105_[+3]_380 30967 8.6e-07 158_[+3]_327 26346 1.7e-06 125_[+3]_360 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=15 seqs=9 47492 ( 412) GACTGACTGCGAGTG 1 48686 ( 67) GTTTGACTGCGAGTG 1 47999 ( 54) GATTGACTGTGATTG 1 31768 ( 32) GTCTGACTGTGAGCC 1 47412 ( 160) AAATGACGGCGAGTG 1 30572 ( 60) AAGTTACTGTGAGTG 1 24739 ( 106) GACTGTCTGCGATCG 1 30967 ( 159) GTCTGAAGGTGAGTC 1 26346 ( 126) ACCTTACTGTTAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 17496 bayes= 11.0584 E= 7.4e+001 43 -982 153 -982 117 -123 -982 35 -115 109 -105 -23 -982 -982 -982 193 -982 -982 175 -23 185 -982 -982 -123 -115 177 -982 -982 -982 -982 -5 157 -982 -982 211 -982 -982 77 -982 109 -982 -982 194 -123 202 -982 -982 -982 -982 -982 175 -23 -982 -23 -982 157 -982 -23 175 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 9 E= 7.4e+001 0.333333 0.000000 0.666667 0.000000 0.555556 0.111111 0.000000 0.333333 0.111111 0.555556 0.111111 0.222222 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.777778 0.222222 0.888889 0.000000 0.000000 0.111111 0.111111 0.888889 0.000000 0.000000 0.000000 0.000000 0.222222 0.777778 0.000000 0.000000 1.000000 0.000000 0.000000 0.444444 0.000000 0.555556 0.000000 0.000000 0.888889 0.111111 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.777778 0.222222 0.000000 0.222222 0.000000 0.777778 0.000000 0.222222 0.777778 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [GA][AT][CT]T[GT]AC[TG]G[TC]GA[GT][TC][GC] -------------------------------------------------------------------------------- Time 38.57 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 31768 1.76e-06 31_[+3(1.61e-07)]_18_[+1(5.30e-07)]_\ 424 42754 6.89e-06 143_[+1(2.76e-07)]_212_\ [+2(1.88e-06)]_113 24739 3.50e-05 105_[+3(7.94e-07)]_74_\ [+2(4.39e-06)]_54_[+2(3.08e-05)]_212 31994 9.00e-04 93_[+2(1.81e-05)]_16_[+1(8.46e-06)]_\ 359 13088 5.54e-02 17_[+2(4.98e-05)]_214_\ [+2(7.92e-06)]_229 46712 6.70e-01 500 47181 5.23e-02 120_[+1(2.97e-05)]_368 21485 3.41e-02 269_[+1(2.97e-05)]_219 47412 1.06e-06 159_[+3(2.03e-07)]_237_\ [+1(4.79e-05)]_42_[+2(4.79e-06)]_15 47492 5.63e-11 328_[+2(4.53e-10)]_63_\ [+3(1.45e-09)]_74 47999 2.33e-05 53_[+3(5.40e-08)]_411_\ [+2(1.94e-05)]_1 48010 2.32e-04 83_[+1(6.78e-05)]_165_\ [+2(9.29e-06)]_196_[+1(2.10e-05)]_12 14715 2.63e-02 272_[+2(5.22e-06)]_208 14917 4.20e-04 38_[+2(4.18e-05)]_56_[+1(3.72e-06)]_\ 374 22525 1.56e-07 29_[+3(6.05e-05)]_141_\ [+2(8.92e-08)]_206_[+1(1.04e-06)]_55_[+2(5.88e-05)]_2 39247 2.32e-03 256_[+1(5.30e-07)]_159_\ [+1(6.19e-05)]_61 22666 2.36e-05 299_[+2(5.62e-08)]_110_\ [+1(2.61e-05)]_59 43431 4.51e-03 49_[+2(1.81e-05)]_390_\ [+1(6.47e-05)]_29 18246 6.26e-03 314_[+1(3.37e-06)]_174 50738 6.13e-01 500 23371 4.46e-01 500 16074 2.64e-02 434_[+2(4.39e-06)]_46 30572 7.25e-07 59_[+3(2.29e-07)]_279_\ [+2(7.31e-06)]_22_[+1(1.81e-05)]_93 30967 2.99e-05 158_[+3(8.62e-07)]_122_\ [+2(2.52e-06)]_185 23959 3.27e-01 340_[+3(9.14e-05)]_145 26346 1.66e-06 125_[+3(1.66e-06)]_188_\ [+2(7.68e-08)]_152 26363 1.07e-02 203_[+1(6.36e-06)]_231_\ [+1(9.64e-05)]_42 34538 5.12e-04 87_[+1(3.35e-05)]_20_[+2(3.67e-06)]_\ 361 54376 2.33e-02 259_[+2(6.19e-06)]_221 12238 9.93e-01 500 35513 1.21e-05 181_[+1(7.09e-08)]_142_\ [+2(6.73e-06)]_145 48198 6.56e-06 64_[+2(1.12e-06)]_15_[+1(4.08e-06)]_\ 36_[+3(7.88e-05)]_338 48686 1.26e-06 66_[+3(2.16e-08)]_221_\ [+2(4.98e-05)]_5_[+2(2.08e-06)]_153 43690 2.57e-02 113_[+1(9.15e-06)]_375 46766 4.44e-06 76_[+1(9.15e-06)]_32_[+2(5.62e-08)]_\ 360 49738 5.11e-02 196_[+1(1.13e-05)]_68_\ [+1(8.54e-05)]_212 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************