******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/145/145.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 17332 1.0000 500 7961 1.0000 500 20787 1.0000 500 54642 1.0000 500 21135 1.0000 500 47384 1.0000 500 47740 1.0000 500 9701 1.0000 500 43401 1.0000 500 50732 1.0000 500 43730 1.0000 500 22919 1.0000 500 40044 1.0000 500 15884 1.0000 500 30977 1.0000 500 33400 1.0000 500 10284 1.0000 500 50604 1.0000 500 45284 1.0000 500 46040 1.0000 500 46133 1.0000 500 48507 1.0000 500 43207 1.0000 500 43451 1.0000 500 47502 1.0000 500 47648 1.0000 500 40716 1.0000 500 50007 1.0000 500 49351 1.0000 500 45193 1.0000 500 50287 1.0000 500 49827 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/145/145.seqs.fa -oc motifs/145 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 32 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 16000 N= 32 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.259 C 0.253 G 0.227 T 0.262 Background letter frequencies (from dataset with add-one prior applied): A 0.259 C 0.253 G 0.227 T 0.261 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 12 sites = 23 llr = 215 E-value = 7.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :17:::::9714 pos.-specific C :4:71::6:113 probability G :3:::a:4:1:3 matrix T a1328:a::17: bits 2.1 * 1.9 * ** 1.7 * ** 1.5 * ** * Relative 1.3 * ** * Entropy 1.1 * ******* (13.5 bits) 0.9 * ******* 0.6 * ********* 0.4 * ********* 0.2 ************ 0.0 ------------ Multilevel TCACTGTCAATA consensus GTT G G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 43207 435 1.46e-07 GCGATCACAG TCACTGTCAATA CATCCATCAC 20787 71 5.18e-07 AGGACCAGGT TGACTGTGAATG GTTGATTGAT 47502 293 6.61e-07 ACATATCACA TGACTGTCAATC ACAAGTCACA 48507 64 1.61e-06 GTCAGCCAAG TTACTGTCAATA CACACGGCTT 46133 387 1.90e-06 TTGCATGATT TTACTGTCAATG TTTTGTAAGT 54642 241 2.30e-06 GGGGATCGTT TGTCTGTGAATC AGGAAATTCC 43451 100 8.08e-06 CACAAGCGTT TCACTGTCAGTC CTGTGATTTG 46040 375 1.51e-05 AAATCCAGAT TCTCTGTCAAAC TTCTCGCTTA 33400 180 1.73e-05 TACAATCGGT TCTCTGTCATTG ATTTTTACTG 40044 65 1.73e-05 CGGAGCGCGC TCACTGTCCATA ATGGTACACC 47384 24 1.73e-05 GGCAGTGACC TGACAGTGAATA CGAACCGAGA 30977 360 1.93e-05 TTATACTACC TAACTGTGACTG TAAGCGTCTC 9701 125 2.12e-05 ATTGCTTGAC TCATCGTGAATA TTGCTATTAT 45284 47 2.54e-05 AAACAGGAGG TCATTGTCAACA CAACCCGGAA 22919 285 2.54e-05 CGAAACATCT TATTTGTCAATG TCTTGTACGA 45193 91 4.03e-05 TTTTCATGGC TCACCGTCAATT CTGTATGTCA 17332 98 4.03e-05 TCTACGCAAA TGACTGTGACAC GAGGAAGATC 43401 380 4.35e-05 TAATTCGCCA TAACTGTGAAGA AAATATTGGC 47648 346 4.70e-05 TCTGGCTTTT TGTGTGTGAATC GTCAACGAGA 43730 152 6.33e-05 AAAGATGTAC TGACTGTGATCG TAATGTCAGT 49827 121 7.22e-05 GCTATCGACT TCACTGTCGCTG AGCCCAAAAA 50287 271 1.11e-04 AGTTATTTCC TTTTTGTGAAAA GACAGTGACA 47740 389 1.54e-04 CCATTGACCA TGTTCGTCAGTA AAGCCTGGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 43207 1.5e-07 434_[+1]_54 20787 5.2e-07 70_[+1]_418 47502 6.6e-07 292_[+1]_196 48507 1.6e-06 63_[+1]_425 46133 1.9e-06 386_[+1]_102 54642 2.3e-06 240_[+1]_248 43451 8.1e-06 99_[+1]_389 46040 1.5e-05 374_[+1]_114 33400 1.7e-05 179_[+1]_309 40044 1.7e-05 64_[+1]_424 47384 1.7e-05 23_[+1]_465 30977 1.9e-05 359_[+1]_129 9701 2.1e-05 124_[+1]_364 45284 2.5e-05 46_[+1]_442 22919 2.5e-05 284_[+1]_204 45193 4e-05 90_[+1]_398 17332 4e-05 97_[+1]_391 43401 4.3e-05 379_[+1]_109 47648 4.7e-05 345_[+1]_143 43730 6.3e-05 151_[+1]_337 49827 7.2e-05 120_[+1]_368 50287 0.00011 270_[+1]_218 47740 0.00015 388_[+1]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=12 seqs=23 43207 ( 435) TCACTGTCAATA 1 20787 ( 71) TGACTGTGAATG 1 47502 ( 293) TGACTGTCAATC 1 48507 ( 64) TTACTGTCAATA 1 46133 ( 387) TTACTGTCAATG 1 54642 ( 241) TGTCTGTGAATC 1 43451 ( 100) TCACTGTCAGTC 1 46040 ( 375) TCTCTGTCAAAC 1 33400 ( 180) TCTCTGTCATTG 1 40044 ( 65) TCACTGTCCATA 1 47384 ( 24) TGACAGTGAATA 1 30977 ( 360) TAACTGTGACTG 1 9701 ( 125) TCATCGTGAATA 1 45284 ( 47) TCATTGTCAACA 1 22919 ( 285) TATTTGTCAATG 1 45193 ( 91) TCACCGTCAATT 1 17332 ( 98) TGACTGTGACAC 1 43401 ( 380) TAACTGTGAAGA 1 47648 ( 346) TGTGTGTGAATC 1 43730 ( 152) TGACTGTGATCG 1 49827 ( 121) TCACTGTCGCTG 1 50287 ( 271) TTTTTGTGAAAA 1 47740 ( 389) TGTTCGTCAGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 15648 bayes= 9.81107 E= 7.2e-001 -1117 -1117 -1117 193 -99 63 62 -100 142 -1117 -1117 22 -1117 155 -238 -27 -257 -95 -1117 166 -1117 -1117 214 -1117 -1117 -1117 -1117 193 -1117 116 94 -1117 182 -254 -238 -1117 142 -95 -138 -159 -99 -154 -238 150 59 5 43 -259 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 23 E= 7.2e-001 0.000000 0.000000 0.000000 1.000000 0.130435 0.391304 0.347826 0.130435 0.695652 0.000000 0.000000 0.304348 0.000000 0.739130 0.043478 0.217391 0.043478 0.130435 0.000000 0.826087 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.565217 0.434783 0.000000 0.913043 0.043478 0.043478 0.000000 0.695652 0.130435 0.086957 0.086957 0.130435 0.086957 0.043478 0.739130 0.391304 0.260870 0.304348 0.043478 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- T[CG][AT][CT]TGT[CG]AAT[AGC] -------------------------------------------------------------------------------- Time 9.81 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 12 sites = 32 llr = 251 E-value = 2.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 141:::::::11 pos.-specific C 9::2614:9131 probability G :53:2131:52: matrix T :17828391538 bits 2.1 1.9 1.7 * 1.5 * ** Relative 1.3 * * * ** Entropy 1.1 * * * ** (11.3 bits) 0.9 * ** * *** * 0.6 ****** *** * 0.4 ****** *** * 0.2 ********** * 0.0 ------------ Multilevel CGTTCTCTCGTT consensus AG G T TC sequence G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 54642 453 2.50e-06 ATGAATCCCT CATTCTGTCGCT TTCCTTTGCC 40044 281 3.94e-06 ACTCCCTTGC CGTTTTCTCGCT CTGAGCATGT 7961 101 4.61e-06 TGTTGCACGC CATTCTGTCTGT TCTAATGGCA 33400 258 7.14e-06 GGTAGGGCAA CGTTCTTTCTAT GCCCCACTTT 43401 91 9.19e-06 CTTTCCGATA CGTTTTGTCTTT TTGCTTCCTG 49351 271 1.08e-05 AGGGGGCGAA CATCCTCTCGCT CCAATTTCTA 30977 332 1.08e-05 CGAACGCCGG CGTTTTTTCGGT CAGATATTAT 15884 51 1.76e-05 GAATACGCCC CGATCTCTCGTT TCCTCTTGCT 21135 424 1.76e-05 TTGCCCACCA CATCCTGTCGTT CCTTTCACGC 20787 379 1.76e-05 TACCCCGCCG CAGTGTCTCGGT ACCTACATAC 48507 467 2.22e-05 CTCACCTTTC CTTTCTTTCTTT CTTTCTTCCT 43730 195 3.58e-05 AAACTATATT CATTCTTTCTTA CAGTTAGTTA 10284 220 3.96e-05 ACGCATTTTC CGTTGTCTCCTT TTCCGCATCG 47648 210 4.43e-05 ACAACTACCA CAGTCTCTCTTC TCTTCCATTG 47384 442 4.43e-05 TGAAAAAGTT CGTTCGCTCGAT TGTCGAGCCA 45284 206 6.67e-05 CGGAGGAATC CTTTGTGTCTCT TTCCATACCA 43207 286 7.40e-05 CACAAGGCGT CGGTCGGTCGGT CGGTCGATCA 50732 458 8.88e-05 GGCAAACAAC CGTTTTCTTTTT TCCGAGTGAG 45193 475 1.06e-04 TTGGAAACCA CTTTCTCTCTCA GCGCCAGTAC 46040 120 1.06e-04 AAGAGCCTAC CATTGTTGCGCT AGAGCACAAG 46133 198 1.50e-04 TCGTTTCCGC CGTTCCTTCTAT ATTCCTCCTC 22919 181 1.63e-04 AGATGTTCTT CGGTGTCTCGAA GAAGTTGCTA 43451 259 1.77e-04 TGCTTCCAGC AGTTTTGTCGCT CGTGATCTTT 17332 259 1.91e-04 ACGAGGTTTC CGGCCTCTCCGT CGCTCCACTC 40716 475 2.41e-04 GAGCAAGAAA CAGTGTTGCTCT AGGATGAAGA 50007 426 2.80e-04 CCAACCGCTT CGGCCCCTCGGT TACTTTCGTC 47502 172 3.01e-04 GGACCGAATC CGGTCGTTCTTC ATATCCCGCC 50604 206 3.24e-04 GGGTCCTTCT CGTTGTGGCTTC TAAACGGAGC 47740 470 3.24e-04 TCAGGGTCAC CAGCCTCTTTCT ATTCTCACTC 49827 93 4.89e-04 AAGAATCTCC AGTTTTCTCTTC CTGTTAGCTA 50287 325 4.89e-04 ATTAGCCGTC CAATCTATCGGT AAGCCATTCT 9701 411 7.98e-04 CAGTTAGCGA CATCCTTTTGCA GAGGCCGATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 54642 2.5e-06 452_[+2]_36 40044 3.9e-06 280_[+2]_208 7961 4.6e-06 100_[+2]_388 33400 7.1e-06 257_[+2]_231 43401 9.2e-06 90_[+2]_398 49351 1.1e-05 270_[+2]_218 30977 1.1e-05 331_[+2]_157 15884 1.8e-05 50_[+2]_438 21135 1.8e-05 423_[+2]_65 20787 1.8e-05 378_[+2]_110 48507 2.2e-05 466_[+2]_22 43730 3.6e-05 194_[+2]_294 10284 4e-05 219_[+2]_269 47648 4.4e-05 209_[+2]_279 47384 4.4e-05 441_[+2]_47 45284 6.7e-05 205_[+2]_283 43207 7.4e-05 285_[+2]_203 50732 8.9e-05 457_[+2]_31 45193 0.00011 474_[+2]_14 46040 0.00011 119_[+2]_369 46133 0.00015 197_[+2]_291 22919 0.00016 180_[+2]_308 43451 0.00018 258_[+2]_230 17332 0.00019 258_[+2]_230 40716 0.00024 474_[+2]_14 50007 0.00028 425_[+2]_63 47502 0.0003 171_[+2]_317 50604 0.00032 205_[+2]_283 47740 0.00032 469_[+2]_19 49827 0.00049 92_[+2]_396 50287 0.00049 324_[+2]_164 9701 0.0008 410_[+2]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=12 seqs=32 54642 ( 453) CATTCTGTCGCT 1 40044 ( 281) CGTTTTCTCGCT 1 7961 ( 101) CATTCTGTCTGT 1 33400 ( 258) CGTTCTTTCTAT 1 43401 ( 91) CGTTTTGTCTTT 1 49351 ( 271) CATCCTCTCGCT 1 30977 ( 332) CGTTTTTTCGGT 1 15884 ( 51) CGATCTCTCGTT 1 21135 ( 424) CATCCTGTCGTT 1 20787 ( 379) CAGTGTCTCGGT 1 48507 ( 467) CTTTCTTTCTTT 1 43730 ( 195) CATTCTTTCTTA 1 10284 ( 220) CGTTGTCTCCTT 1 47648 ( 210) CAGTCTCTCTTC 1 47384 ( 442) CGTTCGCTCGAT 1 45284 ( 206) CTTTGTGTCTCT 1 43207 ( 286) CGGTCGGTCGGT 1 50732 ( 458) CGTTTTCTTTTT 1 45193 ( 475) CTTTCTCTCTCA 1 46040 ( 120) CATTGTTGCGCT 1 46133 ( 198) CGTTCCTTCTAT 1 22919 ( 181) CGGTGTCTCGAA 1 43451 ( 259) AGTTTTGTCGCT 1 17332 ( 259) CGGCCTCTCCGT 1 40716 ( 475) CAGTGTTGCTCT 1 50007 ( 426) CGGCCCCTCGGT 1 47502 ( 172) CGGTCGTTCTTC 1 50604 ( 206) CGTTGTGGCTTC 1 47740 ( 470) CAGCCTCTTTCT 1 49827 ( 93) AGTTTTCTCTTC 1 50287 ( 325) CAATCTATCGGT 1 9701 ( 411) CATCCTTTTGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 15648 bayes= 8.93074 E= 2.4e+002 -205 189 -1164 -1164 53 -1164 123 -148 -205 -1164 31 133 -1164 -43 -1164 164 -1164 123 -5 -48 -1164 -201 -127 169 -305 79 14 11 -1164 -1164 -127 179 -1164 184 -1164 -148 -1164 -201 105 84 -105 31 -5 39 -105 -101 -1164 152 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 32 E= 2.4e+002 0.062500 0.937500 0.000000 0.000000 0.375000 0.000000 0.531250 0.093750 0.062500 0.000000 0.281250 0.656250 0.000000 0.187500 0.000000 0.812500 0.000000 0.593750 0.218750 0.187500 0.000000 0.062500 0.093750 0.843750 0.031250 0.437500 0.250000 0.281250 0.000000 0.000000 0.093750 0.906250 0.000000 0.906250 0.000000 0.093750 0.000000 0.062500 0.468750 0.468750 0.125000 0.312500 0.218750 0.343750 0.125000 0.125000 0.000000 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- C[GA][TG]T[CG]T[CTG]TC[GT][TCG]T -------------------------------------------------------------------------------- Time 19.27 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 16 sites = 9 llr = 125 E-value = 4.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :98874292a7:4a8: pos.-specific C a:2224716::a2:1: probability G :1::111:1:2:3::a matrix T ::::::::1:1:::1: bits 2.1 * 1.9 * * * * * 1.7 * * * * * 1.5 ** * * * * * Relative 1.3 **** * * * * * Entropy 1.1 **** * * * * * (20.0 bits) 0.9 ***** ** *** *** 0.6 ******** *** *** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel CAAAAACACAACAAAG consensus CCCCA A G G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 49351 431 6.47e-10 GTGCGACGAA CAAAAACACAACAAAG TTACACTTTA 22919 440 8.41e-08 CAACAATGGT CAACACGACAACAAAG CACGTACTTG 21135 171 1.15e-07 GCGTCTCGGC CAAAAACCCAGCGAAG AAAAGTGGTT 43730 130 2.58e-07 CTAGTTTTCT CAAAAGCATAGCAAAG ATGTACTGAC 45284 450 2.82e-07 CATCAAACAA CAACACAAAAACCAAG TGATCATCTG 33400 32 2.82e-07 GGACGCGCGA CAAAGCAAAAACGAAG TGGCAACGAT 54642 141 3.34e-07 GCTTGTCACA CGCACACACAACAAAG GCATACACAC 10284 121 5.62e-07 TACACTCATT CACACACACAACCATG ACTCCAAAGA 43451 367 9.66e-07 GTGTCGTCGA CAAAACCAGATCGACG CTACTTACAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 49351 6.5e-10 430_[+3]_54 22919 8.4e-08 439_[+3]_45 21135 1.1e-07 170_[+3]_314 43730 2.6e-07 129_[+3]_355 45284 2.8e-07 449_[+3]_35 33400 2.8e-07 31_[+3]_453 54642 3.3e-07 140_[+3]_344 10284 5.6e-07 120_[+3]_364 43451 9.7e-07 366_[+3]_118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=16 seqs=9 49351 ( 431) CAAAAACACAACAAAG 1 22919 ( 440) CAACACGACAACAAAG 1 21135 ( 171) CAAAAACCCAGCGAAG 1 43730 ( 130) CAAAAGCATAGCAAAG 1 45284 ( 450) CAACACAAAAACCAAG 1 33400 ( 32) CAAAGCAAAAACGAAG 1 54642 ( 141) CGCACACACAACAAAG 1 10284 ( 121) CACACACACAACCATG 1 43451 ( 367) CAAAACCAGATCGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 15520 bayes= 10.8855 E= 4.3e+002 -982 198 -982 -982 178 -982 -103 -982 158 -18 -982 -982 158 -18 -982 -982 136 -18 -103 -982 78 81 -103 -982 -22 140 -103 -982 178 -118 -982 -982 -22 114 -103 -123 195 -982 -982 -982 136 -982 -3 -123 -982 198 -982 -982 78 -18 56 -982 195 -982 -982 -982 158 -118 -982 -123 -982 -982 214 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 9 E= 4.3e+002 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.777778 0.222222 0.000000 0.000000 0.777778 0.222222 0.000000 0.000000 0.666667 0.222222 0.111111 0.000000 0.444444 0.444444 0.111111 0.000000 0.222222 0.666667 0.111111 0.000000 0.888889 0.111111 0.000000 0.000000 0.222222 0.555556 0.111111 0.111111 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.222222 0.111111 0.000000 1.000000 0.000000 0.000000 0.444444 0.222222 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.777778 0.111111 0.000000 0.111111 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- CA[AC][AC][AC][AC][CA]A[CA]A[AG]C[AGC]AAG -------------------------------------------------------------------------------- Time 28.67 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 17332 4.57e-02 97_[+1(4.03e-05)]_391 7961 2.67e-02 100_[+2(4.61e-06)]_388 20787 1.51e-04 70_[+1(5.18e-07)]_296_\ [+2(1.76e-05)]_110 54642 6.00e-08 140_[+3(3.34e-07)]_84_\ [+1(2.30e-06)]_200_[+2(2.50e-06)]_36 21135 1.71e-05 170_[+3(1.15e-07)]_237_\ [+2(1.76e-05)]_65 47384 3.11e-03 23_[+1(1.73e-05)]_406_\ [+2(4.43e-05)]_47 47740 1.04e-01 500 9701 5.36e-02 124_[+1(2.12e-05)]_364 43401 3.30e-03 90_[+2(9.19e-06)]_277_\ [+1(4.35e-05)]_109 50732 8.41e-02 457_[+2(8.88e-05)]_31 43730 1.02e-05 129_[+3(2.58e-07)]_6_[+1(6.33e-05)]_\ 31_[+2(3.58e-05)]_294 22919 6.31e-06 284_[+1(2.54e-05)]_143_\ [+3(8.41e-08)]_45 40044 1.46e-04 64_[+1(1.73e-05)]_204_\ [+2(3.94e-06)]_208 15884 1.03e-02 50_[+2(1.76e-05)]_85_[+3(6.13e-05)]_\ 337 30977 1.88e-03 331_[+2(1.08e-05)]_16_\ [+1(1.93e-05)]_79_[+1(9.61e-05)]_38 33400 8.31e-07 31_[+3(2.82e-07)]_132_\ [+1(1.73e-05)]_66_[+2(7.14e-06)]_231 10284 4.27e-04 120_[+3(5.62e-07)]_83_\ [+2(3.96e-05)]_269 50604 5.86e-01 500 45284 8.55e-06 46_[+1(2.54e-05)]_147_\ [+2(6.67e-05)]_232_[+3(2.82e-07)]_35 46040 1.64e-03 374_[+1(1.51e-05)]_114 46133 8.47e-04 386_[+1(1.90e-06)]_102 48507 4.65e-05 63_[+1(1.61e-06)]_266_\ [+3(9.19e-05)]_109_[+2(2.22e-05)]_22 43207 9.93e-05 285_[+2(7.40e-05)]_137_\ [+1(1.46e-07)]_54 43451 2.14e-05 99_[+1(8.08e-06)]_124_\ [+1(4.35e-05)]_119_[+3(9.66e-07)]_118 47502 2.15e-04 292_[+1(6.61e-07)]_196 47648 1.86e-03 209_[+2(4.43e-05)]_124_\ [+1(4.70e-05)]_143 40716 4.19e-01 500 50007 7.46e-02 477_[+3(9.19e-05)]_7 49351 3.59e-07 270_[+2(1.08e-05)]_148_\ [+3(6.47e-10)]_54 45193 6.04e-03 90_[+1(4.03e-05)]_398 50287 5.54e-02 500 49827 1.22e-01 120_[+1(7.22e-05)]_368 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************