******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/310/310.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 42479 1.0000 500 46872 1.0000 500 37667 1.0000 500 8111 1.0000 500 54800 1.0000 500 47797 1.0000 500 48252 1.0000 500 30092 1.0000 500 55037 1.0000 500 49665 1.0000 500 16401 1.0000 500 49926 1.0000 500 50366 1.0000 500 44229 1.0000 500 44260 1.0000 500 54219 1.0000 500 18911 1.0000 500 44412 1.0000 500 45054 1.0000 500 20310 1.0000 500 43815 1.0000 500 42604 1.0000 500 44092 1.0000 500 43175 1.0000 500 44428 1.0000 500 46743 1.0000 500 43892 1.0000 500 46580 1.0000 500 46597 1.0000 500 44987 1.0000 500 50531 1.0000 500 50224 1.0000 500 48004 1.0000 500 43304 1.0000 500 45349 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/310/310.seqs.fa -oc motifs/310 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 35 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 17500 N= 35 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.274 C 0.239 G 0.218 T 0.270 Background letter frequencies (from dataset with add-one prior applied): A 0.274 C 0.239 G 0.218 T 0.270 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 12 sites = 21 llr = 226 E-value = 2.0e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A ::9:4::1a354 pos.-specific C :2:a:::3::12 probability G :8:::a:6:7:1 matrix T a:1:5:a:::42 bits 2.2 2.0 * ** * 1.8 * ** * 1.5 * * ** * Relative 1.3 **** ** * Entropy 1.1 **** ** ** (15.5 bits) 0.9 **** ***** 0.7 *********** 0.4 *********** 0.2 ************ 0.0 ------------ Multilevel TGACTGTGAGAA consensus C A C ATC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 46743 149 5.99e-08 AGAAAGTATT TGACTGTGAGAA AAGTTTACTA 42604 335 2.92e-07 TGCTAGAAAT TGACAGTGAGTA GTTTGAGAAT 43815 142 4.04e-07 GCGAATGTCT TGACAGTGAGAC GTGTTTGTGG 20310 334 1.03e-06 TCACAGATCT TGACAGTGAGTT CGCAAGTCCG 16401 171 1.03e-06 GTGACGAATA TGACAGTGAGTT CGCATTTCCT 44092 35 2.08e-06 TTTCTGATGC TGACTGTGAGCA GCCGGGAGTA 47797 249 2.08e-06 TCCAGTAAAT TGACTGTGAAAT TGCTTACACG 46597 304 2.72e-06 ACCCGGATTT TGACTGTCAAAA ATGCGAAGCA 43175 265 2.72e-06 TGACTGACCG TGACAGTGAAAT CAAGAACTCG 42479 102 2.98e-06 CGAGTCTGAT TGACAGTGAATC CAGCCGATAG 45054 341 3.85e-06 CACTCTTTCC TGACTGTAAGAA CAGATTCACT 44412 284 4.69e-06 CGACTCTCGC TGTCTGTGAGAA TATTTTCGCT 48004 406 6.26e-06 AAATAAGTAT TGACAGTAAGTA GTGTGGATTG 44229 333 6.26e-06 TGTCTGACTG TGACAGTCAGTG AGTTAGTTCC 37667 210 7.35e-06 CCAGTCACAG TCACTGTCAGTC ATCACATTTT 44987 328 1.38e-05 TTTCGCAAAT TGACTCTGAGAC TGGGTTTTCG 50224 253 1.93e-05 TGTAGCGAGG GCACTGTGAGAA CACACTGCAC 49665 231 2.02e-05 TCACATACAA TGTCAGTGAATC CGACCCCGAA 18911 180 2.15e-05 GTATGCTACC TCACTGTCAAAG TTATTAAAGA 55037 144 2.15e-05 ATCGGAGTAA TCACTGTCAGCT CACTACGACG 50531 26 3.63e-05 TCCATAGTTG TCACGGTCAAAA AGCGAACCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 46743 6e-08 148_[+1]_340 42604 2.9e-07 334_[+1]_154 43815 4e-07 141_[+1]_347 20310 1e-06 333_[+1]_155 16401 1e-06 170_[+1]_318 44092 2.1e-06 34_[+1]_454 47797 2.1e-06 248_[+1]_240 46597 2.7e-06 303_[+1]_185 43175 2.7e-06 264_[+1]_224 42479 3e-06 101_[+1]_387 45054 3.9e-06 340_[+1]_148 44412 4.7e-06 283_[+1]_205 48004 6.3e-06 405_[+1]_83 44229 6.3e-06 332_[+1]_156 37667 7.3e-06 209_[+1]_279 44987 1.4e-05 327_[+1]_161 50224 1.9e-05 252_[+1]_236 49665 2e-05 230_[+1]_258 18911 2.1e-05 179_[+1]_309 55037 2.1e-05 143_[+1]_345 50531 3.6e-05 25_[+1]_463 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=12 seqs=21 46743 ( 149) TGACTGTGAGAA 1 42604 ( 335) TGACAGTGAGTA 1 43815 ( 142) TGACAGTGAGAC 1 20310 ( 334) TGACAGTGAGTT 1 16401 ( 171) TGACAGTGAGTT 1 44092 ( 35) TGACTGTGAGCA 1 47797 ( 249) TGACTGTGAAAT 1 46597 ( 304) TGACTGTCAAAA 1 43175 ( 265) TGACAGTGAAAT 1 42479 ( 102) TGACAGTGAATC 1 45054 ( 341) TGACTGTAAGAA 1 44412 ( 284) TGTCTGTGAGAA 1 48004 ( 406) TGACAGTAAGTA 1 44229 ( 333) TGACAGTCAGTG 1 37667 ( 210) TCACTGTCAGTC 1 44987 ( 328) TGACTCTGAGAC 1 50224 ( 253) GCACTGTGAGAA 1 49665 ( 231) TGTCAGTGAATC 1 18911 ( 180) TCACTGTCAAAG 1 55037 ( 144) TCACTGTCAGCT 1 50531 ( 26) TCACGGTCAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 17115 bayes= 9.97408 E= 2.0e-010 -1104 -1104 -219 182 -1104 0 180 -1104 172 -1104 -1104 -150 -1104 207 -1104 -1104 65 -1104 -219 96 -1104 -232 213 -1104 -1104 -1104 -1104 189 -152 26 151 -1104 187 -1104 -1104 -1104 28 -1104 161 -1104 94 -132 -1104 50 65 0 -119 -18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 21 E= 2.0e-010 0.000000 0.000000 0.047619 0.952381 0.000000 0.238095 0.761905 0.000000 0.904762 0.000000 0.000000 0.095238 0.000000 1.000000 0.000000 0.000000 0.428571 0.000000 0.047619 0.523810 0.000000 0.047619 0.952381 0.000000 0.000000 0.000000 0.000000 1.000000 0.095238 0.285714 0.619048 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.523810 0.095238 0.000000 0.380952 0.428571 0.238095 0.095238 0.238095 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- T[GC]AC[TA]GT[GC]A[GA][AT][ACT] -------------------------------------------------------------------------------- Time 10.19 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 19 sites = 14 llr = 189 E-value = 1.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A ::::21:::::1:1:1::: pos.-specific C 151826:6:4:1:6131:4 probability G 4::2:::1316:::1121: matrix T 659:64a47548a395696 bits 2.2 2.0 * * 1.8 * * 1.5 * * * Relative 1.3 ** * * * Entropy 1.1 ** * * * * * ** (19.4 bits) 0.9 *** * * ***** ** 0.7 **** ********** *** 0.4 *************** *** 0.2 ******************* 0.0 ------------------- Multilevel TCTCTCTCTTGTTCTTTTT consensus GT GAT TGCT T CG C sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------- 48004 478 6.99e-10 CCGTAGACTT TCTCTCTCTCTTTCTCTTT AAGC 30092 338 1.06e-09 CGCATATTGG TTTCTCTTGTGTTCTTTTT CTATGCCGCC 43175 335 2.50e-08 GCATCAACTT GTTCTTTTTTTTTTTTTTT TCGGAACAAA 49665 348 8.27e-08 GCATTGTACA GCTCTCTCTCTCTCTCGTT TACAGTTACT 46597 204 1.03e-07 TGAACAATTC TTTGTCTTTCTTTCTTGTC ACATACACTT 45054 295 1.88e-07 ATTCCTGGAA GTTCTATCGCGTTCTGTTT GTGCAACCTT 43892 274 2.49e-07 GCAAAAAATC TCTCATTTGTGTTCTATTT AAATTCCAAG 49926 300 3.86e-07 TTCCGTTTCG GCTCCCTCTTTTTATCGTT GGTTTCGTTG 37667 246 6.79e-07 GTCTGCATTT GTTCTCTGTTTTTTTTTGC GAACTTTGGT 44092 166 1.05e-06 CTTTGTGAAG TTTCATTCTTGATCCTTTT TCTATATATA 50366 204 1.05e-06 TCGGGGCAGA CCTCTCTCTTGTTCTGCGC TGTCGTTGAC 50224 5 1.13e-06 CTCG TTTCCTTTTGGTTTTCCTC GGACCCCCCC 42479 322 1.38e-06 GACATCTGGT TCTGATTCGGGTTCGTTTT GAGTTCCGTT 45349 383 2.86e-06 ATACCTAATT TCCGCCTCTCGCTTTTTTC CCGCCCGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 48004 7e-10 477_[+2]_4 30092 1.1e-09 337_[+2]_144 43175 2.5e-08 334_[+2]_147 49665 8.3e-08 347_[+2]_134 46597 1e-07 203_[+2]_278 45054 1.9e-07 294_[+2]_187 43892 2.5e-07 273_[+2]_208 49926 3.9e-07 299_[+2]_182 37667 6.8e-07 245_[+2]_236 44092 1.1e-06 165_[+2]_316 50366 1.1e-06 203_[+2]_278 50224 1.1e-06 4_[+2]_477 42479 1.4e-06 321_[+2]_160 45349 2.9e-06 382_[+2]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=19 seqs=14 48004 ( 478) TCTCTCTCTCTTTCTCTTT 1 30092 ( 338) TTTCTCTTGTGTTCTTTTT 1 43175 ( 335) GTTCTTTTTTTTTTTTTTT 1 49665 ( 348) GCTCTCTCTCTCTCTCGTT 1 46597 ( 204) TTTGTCTTTCTTTCTTGTC 1 45054 ( 295) GTTCTATCGCGTTCTGTTT 1 43892 ( 274) TCTCATTTGTGTTCTATTT 1 49926 ( 300) GCTCCCTCTTTTTATCGTT 1 37667 ( 246) GTTCTCTGTTTTTTTTTGC 1 44092 ( 166) TTTCATTCTTGATCCTTTT 1 50366 ( 204) CCTCTCTCTTGTTCTGCGC 1 50224 ( 5) TTTCCTTTTGGTTTTCCTC 1 42479 ( 322) TCTGATTCGGGTTCGTTTT 1 45349 ( 383) TCCGCCTCTCGCTTTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 16870 bayes= 10.8398 E= 1.8e-001 -1045 -174 71 108 -1045 107 -1045 89 -1045 -174 -1045 178 -1045 172 -2 -1045 -35 -15 -1045 108 -193 126 -1045 40 -1045 -1045 -1045 189 -1045 126 -161 40 -1045 -1045 39 140 -1045 58 -61 89 -1045 -1045 139 67 -193 -74 -1045 154 -1045 -1045 -1045 189 -193 143 -1045 8 -1045 -174 -161 167 -193 26 -61 89 -1045 -74 -2 125 -1045 -1045 -61 167 -1045 58 -1045 125 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 14 E= 1.8e-001 0.000000 0.071429 0.357143 0.571429 0.000000 0.500000 0.000000 0.500000 0.000000 0.071429 0.000000 0.928571 0.000000 0.785714 0.214286 0.000000 0.214286 0.214286 0.000000 0.571429 0.071429 0.571429 0.000000 0.357143 0.000000 0.000000 0.000000 1.000000 0.000000 0.571429 0.071429 0.357143 0.000000 0.000000 0.285714 0.714286 0.000000 0.357143 0.142857 0.500000 0.000000 0.000000 0.571429 0.428571 0.071429 0.142857 0.000000 0.785714 0.000000 0.000000 0.000000 1.000000 0.071429 0.642857 0.000000 0.285714 0.000000 0.071429 0.071429 0.857143 0.071429 0.285714 0.142857 0.500000 0.000000 0.142857 0.214286 0.642857 0.000000 0.000000 0.142857 0.857143 0.000000 0.357143 0.000000 0.642857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [TG][CT]T[CG][TAC][CT]T[CT][TG][TC][GT]TT[CT]T[TC][TG]T[TC] -------------------------------------------------------------------------------- Time 21.22 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 12 sites = 26 llr = 231 E-value = 6.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :2::::13:378 pos.-specific C ::a32:139:1: probability G 1:::311117:2 matrix T 98:75973::2: bits 2.2 2.0 * 1.8 * * 1.5 * * * Relative 1.3 * * * * Entropy 1.1 **** * * * (12.8 bits) 0.9 **** * **** 0.7 **** ** **** 0.4 ******* **** 0.2 ******* **** 0.0 ------------ Multilevel TTCTTTTTCGAA consensus CG A A G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 45054 75 5.13e-07 CCGGCGAGCA TTCTGTTACGAA ACAACCACGG 44987 265 1.22e-06 GGTGCCATGC TTCTCTTACGAA AATGTCCGCG 43304 45 2.00e-06 AAAATTTGTT TTCTGTTCCAAA TCGATCTTCC 18911 405 2.41e-06 TCAGTGGTAT TTCTTTTGCGAA CACTGCCATC 46580 290 6.05e-06 AAAGTGTCAC TTCTCTTCCAAA CAAGTTGATC 43892 341 1.12e-05 AGTACAGTCA GTCTGTTACGAA TTTTCTAGAG 46743 179 1.37e-05 TACTTCGAAG TACCTTTACGAA AGCAAAGTCT 44092 279 1.37e-05 TTCGAGGGCT TTCTGTTACATA GATAAGTGTA 50224 67 1.52e-05 AAACGTCGGC TTCTGTGACAAA ATCTTTGCCT 54219 255 1.91e-05 GGGCCGGATC TTCTTTTTCCAA CTTCTTGAGA 50531 10 2.92e-05 TAAGCACGC TTCCGTTCCATA GTTGTCACGG 42479 350 2.92e-05 TGAGTTCCGT TTCCGTGTCAAA CGCGAGCAAA 43815 195 3.74e-05 TGTCAATAAT TACTTTCCCGAA GGACTGATAG 46597 484 4.13e-05 GACTGTACTC TCCCTTTTCGAA GAACT 44260 119 4.47e-05 CGTGTCACCA TTCTCTCGCGAA CGCGAACACA 50366 343 5.16e-05 CGAGGATTCG TTCTTGTTCGCA GACCTCGAGA 43175 202 5.91e-05 GAGAGGCGTA TTCTCTATCGAG AAAGAGCGCA 20310 280 5.91e-05 CGGTACGACT TACCTTTACGTA CTCAAAGTCA 55037 114 5.91e-05 ACTGCAGGTG TTCCTTACCAAA AACCACAAAT 42604 7 6.51e-05 TCCTAT TTCTTTTTGGCA ATCACCAACC 16401 188 6.51e-05 GAGTTCGCAT TTCCTGTACGAG AGAGCGATGA 8111 269 6.51e-05 CCAGTCCTCT TTCTTCTCCGAG GCCAATGGAA 46872 1 6.51e-05 . GTCTCTTTCGAG CTCTCGAGTT 48252 400 7.14e-05 ACACAAGAAA TTCTTTGCCGTG TTTCGGTGAC 49665 208 1.36e-04 TCAAAAACGT TTCCGTCTCACA GTCACATACA 49926 487 1.44e-04 GAACTGACTT TACTGTTTGGAG AG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 45054 5.1e-07 74_[+3]_414 44987 1.2e-06 264_[+3]_224 43304 2e-06 44_[+3]_444 18911 2.4e-06 404_[+3]_84 46580 6.1e-06 289_[+3]_199 43892 1.1e-05 340_[+3]_148 46743 1.4e-05 178_[+3]_310 44092 1.4e-05 278_[+3]_210 50224 1.5e-05 66_[+3]_422 54219 1.9e-05 254_[+3]_234 50531 2.9e-05 9_[+3]_479 42479 2.9e-05 349_[+3]_139 43815 3.7e-05 194_[+3]_294 46597 4.1e-05 483_[+3]_5 44260 4.5e-05 118_[+3]_370 50366 5.2e-05 342_[+3]_146 43175 5.9e-05 201_[+3]_287 20310 5.9e-05 279_[+3]_209 55037 5.9e-05 113_[+3]_375 42604 6.5e-05 6_[+3]_482 16401 6.5e-05 187_[+3]_301 8111 6.5e-05 268_[+3]_220 46872 6.5e-05 [+3]_488 48252 7.1e-05 399_[+3]_89 49665 0.00014 207_[+3]_281 49926 0.00014 486_[+3]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=12 seqs=26 45054 ( 75) TTCTGTTACGAA 1 44987 ( 265) TTCTCTTACGAA 1 43304 ( 45) TTCTGTTCCAAA 1 18911 ( 405) TTCTTTTGCGAA 1 46580 ( 290) TTCTCTTCCAAA 1 43892 ( 341) GTCTGTTACGAA 1 46743 ( 179) TACCTTTACGAA 1 44092 ( 279) TTCTGTTACATA 1 50224 ( 67) TTCTGTGACAAA 1 54219 ( 255) TTCTTTTTCCAA 1 50531 ( 10) TTCCGTTCCATA 1 42479 ( 350) TTCCGTGTCAAA 1 43815 ( 195) TACTTTCCCGAA 1 46597 ( 484) TCCCTTTTCGAA 1 44260 ( 119) TTCTCTCGCGAA 1 50366 ( 343) TTCTTGTTCGCA 1 43175 ( 202) TTCTCTATCGAG 1 20310 ( 280) TACCTTTACGTA 1 55037 ( 114) TTCCTTACCAAA 1 42604 ( 7) TTCTTTTTGGCA 1 16401 ( 188) TTCCTGTACGAG 1 8111 ( 269) TTCTTCTCCGAG 1 46872 ( 1) GTCTCTTTCGAG 1 48252 ( 400) TTCTTTGCCGTG 1 49665 ( 208) TTCCGTCTCACA 1 49926 ( 487) TACTGTTTGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 17115 bayes= 9.89153 E= 6.7e+001 -1134 -1134 -150 177 -83 -263 -1134 158 -1134 207 -1134 -1134 -1134 37 -1134 136 -1134 -31 67 77 -1134 -263 -150 171 -183 -105 -92 136 17 17 -150 36 -1134 195 -150 -1134 17 -263 158 -1134 142 -105 -1134 -81 149 -1134 8 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 26 E= 6.7e+001 0.000000 0.000000 0.076923 0.923077 0.153846 0.038462 0.000000 0.807692 0.000000 1.000000 0.000000 0.000000 0.000000 0.307692 0.000000 0.692308 0.000000 0.192308 0.346154 0.461538 0.000000 0.038462 0.076923 0.884615 0.076923 0.115385 0.115385 0.692308 0.307692 0.269231 0.076923 0.346154 0.000000 0.923077 0.076923 0.000000 0.307692 0.038462 0.653846 0.000000 0.730769 0.115385 0.000000 0.153846 0.769231 0.000000 0.230769 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- TTC[TC][TG]TT[TAC]C[GA]A[AG] -------------------------------------------------------------------------------- Time 31.40 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 42479 2.52e-06 101_[+1(2.98e-06)]_208_\ [+2(1.38e-06)]_9_[+3(2.92e-05)]_139 46872 2.32e-01 [+3(6.51e-05)]_488 37667 7.85e-05 209_[+1(7.35e-06)]_24_\ [+2(6.79e-07)]_236 8111 1.22e-02 268_[+3(6.51e-05)]_220 54800 3.19e-01 500 47797 2.20e-02 248_[+1(2.08e-06)]_240 48252 1.77e-01 399_[+3(7.14e-05)]_89 30092 8.74e-06 337_[+2(1.06e-09)]_144 55037 1.20e-02 113_[+3(5.91e-05)]_18_\ [+1(2.15e-05)]_345 49665 4.33e-06 230_[+1(2.02e-05)]_105_\ [+2(8.27e-08)]_134 16401 8.77e-05 170_[+1(1.03e-06)]_5_[+3(6.51e-05)]_\ 301 49926 1.12e-04 299_[+2(3.86e-07)]_182 50366 3.81e-04 203_[+2(1.05e-06)]_120_\ [+3(5.16e-05)]_146 44229 1.14e-02 90_[+1(1.60e-05)]_230_\ [+1(6.26e-06)]_156 44260 1.67e-01 118_[+3(4.47e-05)]_370 54219 7.02e-02 254_[+3(1.91e-05)]_234 18911 2.01e-04 179_[+1(2.15e-05)]_213_\ [+3(2.41e-06)]_84 44412 1.78e-02 283_[+1(4.69e-06)]_205 45054 1.32e-08 74_[+3(5.13e-07)]_208_\ [+2(1.88e-07)]_27_[+1(3.85e-06)]_148 20310 7.74e-04 279_[+3(5.91e-05)]_42_\ [+1(1.03e-06)]_155 43815 2.30e-04 141_[+1(4.04e-07)]_41_\ [+3(3.74e-05)]_294 42604 3.44e-04 6_[+3(6.51e-05)]_316_[+1(2.92e-07)]_\ 77_[+1(1.93e-05)]_65 44092 7.28e-07 34_[+1(2.08e-06)]_119_\ [+2(1.05e-06)]_94_[+3(1.37e-05)]_210 43175 1.16e-07 201_[+3(5.91e-05)]_51_\ [+1(2.72e-06)]_58_[+2(2.50e-08)]_147 44428 5.94e-01 500 46743 1.15e-05 148_[+1(5.99e-08)]_18_\ [+3(1.37e-05)]_35_[+1(2.39e-05)]_194_[+1(2.53e-05)]_57 43892 1.72e-05 30_[+2(1.08e-05)]_224_\ [+2(2.49e-07)]_48_[+3(1.12e-05)]_148 46580 5.08e-02 289_[+3(6.05e-06)]_199 46597 3.03e-07 203_[+2(1.03e-07)]_81_\ [+1(2.72e-06)]_168_[+3(4.13e-05)]_5 44987 1.69e-05 264_[+3(1.22e-06)]_51_\ [+1(1.38e-05)]_6_[+2(6.16e-05)]_136 50531 7.96e-03 9_[+3(2.92e-05)]_4_[+1(3.63e-05)]_\ 463 50224 6.22e-06 4_[+2(1.13e-06)]_43_[+3(1.52e-05)]_\ 174_[+1(1.93e-05)]_236 48004 5.06e-08 405_[+1(6.26e-06)]_60_\ [+2(6.99e-10)]_4 43304 1.10e-02 44_[+3(2.00e-06)]_444 45349 9.65e-03 382_[+2(2.86e-06)]_99 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************