******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/343/343.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 31753 1.0000 500 9619 1.0000 500 46351 1.0000 500 46456 1.0000 500 13240 1.0000 500 47207 1.0000 500 47866 1.0000 500 47917 1.0000 500 47957 1.0000 500 48242 1.0000 500 48985 1.0000 500 23646 1.0000 500 30908 1.0000 500 50115 1.0000 500 55153 1.0000 500 44825 1.0000 500 51806 1.0000 500 45612 1.0000 500 46156 1.0000 500 38665 1.0000 500 43408 1.0000 500 40368 1.0000 500 50111 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/343/343.seqs.fa -oc motifs/343 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 23 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 11500 N= 23 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.270 C 0.235 G 0.230 T 0.264 Background letter frequencies (from dataset with add-one prior applied): A 0.270 C 0.235 G 0.230 T 0.264 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 12 sites = 23 llr = 195 E-value = 1.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 44::39:2::4a pos.-specific C 117:217:::2: probability G 33:13:::a:4: matrix T 12391:28:a:: bits 2.1 1.9 * * 1.7 ** * 1.5 * ** * Relative 1.3 * * ** * Entropy 1.1 ** ***** * (12.3 bits) 0.8 ** ***** * 0.6 ** ***** * 0.4 ** ******* 0.2 * ********** 0.0 ------------ Multilevel AACTAACTGTAA consensus GGT G T G sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 50115 144 4.32e-07 GGATGTTCGT GACTGACTGTGA CGTCACTATC 38665 140 1.47e-06 GGTTCAAAAA GGCTAACTGTAA CATTAGTAAC 46156 290 4.91e-06 TCAAATGTCA CACTAACTGTAA GAGTACCCTC 46351 236 6.61e-06 CAACATGGTC TGCTGACTGTGA GTGTCTGCGT 40368 159 7.81e-06 TGACCGTACC AACTTACTGTGA TTGGTCTAGA 46456 130 7.81e-06 CGAGAGTGGA AACTAATTGTAA ACTATGACCG 31753 309 1.27e-05 CTGTATTCAC ACTTAACTGTAA GCGCGCAGTA 47866 462 1.41e-05 TTGTGTTGGC GCCTGACTGTCA ACGCTTCCGA 43408 339 2.64e-05 ATATTCTTAC AGTTAATTGTAA GATAGAAAGA 51806 288 2.64e-05 AGGGCACGGA ATCTCACAGTAA ACACAGAAAC 30908 261 3.79e-05 TTTCGAAATT GACTCACAGTCA CGTAAATTTG 9619 46 3.79e-05 TACTTTCCTG AACTGAATGTGA ATTATGGCTA 47957 179 4.95e-05 TAGTAGCACT GTCGAACTGTAA ATTTGGGGAC 47207 406 7.52e-05 CTTACAAGTC AACTGCCAGTAA GAGCACGAGC 50111 352 8.19e-05 ATGAAAATCT CACTCATTGTCA AGCAGTCAAA 44825 151 9.50e-05 CGGACAGAAC GATTGACTGCGA CTCTTCATCG 55153 113 9.50e-05 ATCTGTTTAC AGTTTATTGTAA ATCTAGTCTC 23646 65 1.20e-04 GTAATCATCG TGCTCACAGTCA GCGAGAACCC 48985 180 1.38e-04 TGTTCCATCG ACTTCCCTGTGA ACGTCACCAT 47917 271 1.38e-04 GCAATTTGGA ATTAGACTGTGA GCAATGTACC 13240 94 2.07e-04 GAAAGAACAA GTTTAACTTTGA CCCCCGTACG 45612 447 2.34e-04 ACTTCGGCTA TGTTAACGGTAA GGTAAATCAG 48242 275 2.63e-04 GCCAAGGAGT CTCGGATTGTGA AAAAGGTCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 50115 4.3e-07 143_[+1]_345 38665 1.5e-06 139_[+1]_349 46156 4.9e-06 289_[+1]_199 46351 6.6e-06 235_[+1]_253 40368 7.8e-06 158_[+1]_330 46456 7.8e-06 129_[+1]_359 31753 1.3e-05 308_[+1]_180 47866 1.4e-05 461_[+1]_27 43408 2.6e-05 338_[+1]_150 51806 2.6e-05 287_[+1]_201 30908 3.8e-05 260_[+1]_228 9619 3.8e-05 45_[+1]_443 47957 4.9e-05 178_[+1]_310 47207 7.5e-05 405_[+1]_83 50111 8.2e-05 351_[+1]_137 44825 9.5e-05 150_[+1]_338 55153 9.5e-05 112_[+1]_376 23646 0.00012 64_[+1]_424 48985 0.00014 179_[+1]_309 47917 0.00014 270_[+1]_218 13240 0.00021 93_[+1]_395 45612 0.00023 446_[+1]_42 48242 0.00026 274_[+1]_214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=12 seqs=23 50115 ( 144) GACTGACTGTGA 1 38665 ( 140) GGCTAACTGTAA 1 46156 ( 290) CACTAACTGTAA 1 46351 ( 236) TGCTGACTGTGA 1 40368 ( 159) AACTTACTGTGA 1 46456 ( 130) AACTAATTGTAA 1 31753 ( 309) ACTTAACTGTAA 1 47866 ( 462) GCCTGACTGTCA 1 43408 ( 339) AGTTAATTGTAA 1 51806 ( 288) ATCTCACAGTAA 1 30908 ( 261) GACTCACAGTCA 1 9619 ( 46) AACTGAATGTGA 1 47957 ( 179) GTCGAACTGTAA 1 47207 ( 406) AACTGCCAGTAA 1 50111 ( 352) CACTCATTGTCA 1 44825 ( 151) GATTGACTGCGA 1 55153 ( 113) AGTTTATTGTAA 1 23646 ( 65) TGCTCACAGTCA 1 48985 ( 180) ACTTCCCTGTGA 1 47917 ( 271) ATTAGACTGTGA 1 13240 ( 94) GTTTAACTTTGA 1 45612 ( 447) TGTTAACGGTAA 1 48242 ( 275) CTCGGATTGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 11247 bayes= 9.334 E= 1.0e+000 69 -85 40 -102 53 -85 18 -28 -1117 147 -1117 40 -263 -1117 -141 172 36 -11 59 -160 176 -143 -1117 -1117 -263 165 -1117 -28 -64 -1117 -240 157 -1117 -1117 205 -260 -1117 -243 -1117 186 69 -44 76 -1117 189 -1117 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 23 E= 1.0e+000 0.434783 0.130435 0.304348 0.130435 0.391304 0.130435 0.260870 0.217391 0.000000 0.652174 0.000000 0.347826 0.043478 0.000000 0.086957 0.869565 0.347826 0.217391 0.347826 0.086957 0.913043 0.086957 0.000000 0.000000 0.043478 0.739130 0.000000 0.217391 0.173913 0.000000 0.043478 0.782609 0.000000 0.000000 0.956522 0.043478 0.000000 0.043478 0.000000 0.956522 0.434783 0.173913 0.391304 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [AG][AGT][CT]T[AGC]A[CT]TGT[AG]A -------------------------------------------------------------------------------- Time 4.73 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 12 sites = 9 llr = 104 E-value = 1.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 2:6:619:a:1: pos.-specific C 7:213::6:::: probability G :1:9:914:a:a matrix T 192:1:::::9: bits 2.1 * * 1.9 ** * 1.7 * * ** * 1.5 * * ** **** Relative 1.3 * * ** **** Entropy 1.1 * * ******* (16.6 bits) 0.8 ** * ******* 0.6 ** ********* 0.4 ************ 0.2 ************ 0.0 ------------ Multilevel CTAGAGACAGTG consensus A C C G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 46351 139 1.13e-07 TCCAGCTCTA CTAGAGAGAGTG CTTTTTTTCA 55153 175 2.12e-07 TAATTACGAA CTAGCGAGAGTG GACACCAACG 48242 254 3.18e-07 GTTTGCATGC CTTGAGACAGTG CCAAGGAGTC 50115 267 1.80e-06 AGCTTGCTAG CTAGAGAGAGAG AGATACCATA 51806 122 4.81e-06 CTTCAAGCCG TTCGCGAGAGTG TCTCGTGCGC 47866 202 4.81e-06 TGGCGTTGTG CTTGCGGCAGTG CTCGGTGGAA 46156 452 5.51e-06 CTCCCAGGTG ATAGAAACAGTG CATGTGAGTG 23646 7 5.91e-06 CCTCGA CGAGTGACAGTG GTACGAGCGC 46456 287 8.51e-06 GACACCGTCC ATCCAGACAGTG AAAGGAAACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 46351 1.1e-07 138_[+2]_350 55153 2.1e-07 174_[+2]_314 48242 3.2e-07 253_[+2]_235 50115 1.8e-06 266_[+2]_222 51806 4.8e-06 121_[+2]_367 47866 4.8e-06 201_[+2]_287 46156 5.5e-06 451_[+2]_37 23646 5.9e-06 6_[+2]_482 46456 8.5e-06 286_[+2]_202 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=12 seqs=9 46351 ( 139) CTAGAGAGAGTG 1 55153 ( 175) CTAGCGAGAGTG 1 48242 ( 254) CTTGAGACAGTG 1 50115 ( 267) CTAGAGAGAGAG 1 51806 ( 122) TTCGCGAGAGTG 1 47866 ( 202) CTTGCGGCAGTG 1 46156 ( 452) ATAGAAACAGTG 1 23646 ( 7) CGAGTGACAGTG 1 46456 ( 287) ATCCAGACAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 11247 bayes= 10.4206 E= 1.1e+003 -28 150 -982 -125 -982 -982 -105 175 104 -8 -982 -25 -982 -108 195 -982 104 50 -982 -125 -128 -982 195 -982 172 -982 -105 -982 -982 124 95 -982 189 -982 -982 -982 -982 -982 212 -982 -128 -982 -982 175 -982 -982 212 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 9 E= 1.1e+003 0.222222 0.666667 0.000000 0.111111 0.000000 0.000000 0.111111 0.888889 0.555556 0.222222 0.000000 0.222222 0.000000 0.111111 0.888889 0.000000 0.555556 0.333333 0.000000 0.111111 0.111111 0.000000 0.888889 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 0.555556 0.444444 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.000000 0.000000 0.888889 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [CA]T[ACT]G[AC]GA[CG]AGTG -------------------------------------------------------------------------------- Time 9.11 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 16 sites = 16 llr = 166 E-value = 1.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 7336:5123::1:431 pos.-specific C 12:11125:1:1::2: probability G 31829:628:12a13: matrix T :4:1:411:996:529 bits 2.1 * 1.9 * 1.7 * ** * 1.5 * ** * Relative 1.3 * * *** * * Entropy 1.1 * * *** * * (15.0 bits) 0.8 * * * *** * * 0.6 * * *** *** * * 0.4 * ***** ****** * 0.2 ************** * 0.0 ---------------- Multilevel ATGAGAGCGTTTGTAT consensus GAA T A AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 23646 323 2.16e-08 ATGGTGAAAA ATGGGAGCGTTTGAGT GCCAAGGATA 30908 73 6.53e-07 CATGCAGCTT AAGAGTGAATTTGAAT CGGTTGAACT 51806 25 1.64e-06 GTGTGTGTAT GTGTGTGTGTTTGTGT TGGACCCCGA 46456 442 2.04e-06 GTTGCGGCAG AAGAGACCGTTAGAGT ATATTATCCC 50111 445 2.27e-06 AAGTCGACGA AGGAGTGCGTTCGATT ACAGACCTAC 43408 141 2.80e-06 TTTCCAGTTC GTACGAGCGTTTGTAT CTCGTAGTTA 31753 238 2.80e-06 TCTCAATTCT ATGAGATTGTTTGTCT GGACGACAGT 13240 306 4.54e-06 GCTGTCCAAT ATGAGAGCACTGGTGT GGGGATTTCT 45612 27 4.98e-06 CAAAATCATT ATGAGAACATTGGATT GTCGATGGAC 47917 47 6.54e-06 ATGATACCGA GCAAGTCGGTTTGTAT ATCTCCATGG 46156 332 7.15e-06 AGTTATTGTC AAGAGTGAGTTTGGCA TCGTGGACCG 48242 200 1.29e-05 AGTGTACCAT ACGAGTCGGTTGGGTT ATCATCGTAC 50115 212 2.03e-05 ACGTCGTCCA AAAGCAGGGTTTGTAT TCTGTGGACT 9619 174 2.03e-05 TGGAACAACC GCAGGTGCGTGTGTGT AAGAACGGAC 40368 326 3.79e-05 CATTTCTCTG ATGAGCAAGTTTGAAA CTGACAGTTA 55153 448 4.31e-05 AGACTAAGAG CAGTGAGCATTCGTCT TGTTCCGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 23646 2.2e-08 322_[+3]_162 30908 6.5e-07 72_[+3]_412 51806 1.6e-06 24_[+3]_460 46456 2e-06 441_[+3]_43 50111 2.3e-06 444_[+3]_40 43408 2.8e-06 140_[+3]_344 31753 2.8e-06 237_[+3]_247 13240 4.5e-06 305_[+3]_179 45612 5e-06 26_[+3]_458 47917 6.5e-06 46_[+3]_438 46156 7.1e-06 331_[+3]_153 48242 1.3e-05 199_[+3]_285 50115 2e-05 211_[+3]_273 9619 2e-05 173_[+3]_311 40368 3.8e-05 325_[+3]_159 55153 4.3e-05 447_[+3]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=16 seqs=16 23646 ( 323) ATGGGAGCGTTTGAGT 1 30908 ( 73) AAGAGTGAATTTGAAT 1 51806 ( 25) GTGTGTGTGTTTGTGT 1 46456 ( 442) AAGAGACCGTTAGAGT 1 50111 ( 445) AGGAGTGCGTTCGATT 1 43408 ( 141) GTACGAGCGTTTGTAT 1 31753 ( 238) ATGAGATTGTTTGTCT 1 13240 ( 306) ATGAGAGCACTGGTGT 1 45612 ( 27) ATGAGAACATTGGATT 1 47917 ( 47) GCAAGTCGGTTTGTAT 1 46156 ( 332) AAGAGTGAGTTTGGCA 1 48242 ( 200) ACGAGTCGGTTGGGTT 1 50115 ( 212) AAAGCAGGGTTTGTAT 1 9619 ( 174) GCAGGTGCGTGTGTGT 1 40368 ( 326) ATGAGCAAGTTTGAAA 1 55153 ( 448) CAGTGAGCATTCGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 11155 bayes= 9.44333 E= 1.2e+003 135 -191 12 -1064 21 -33 -188 73 -11 -1064 170 -1064 121 -191 -30 -108 -1064 -191 202 -1064 89 -191 -1064 73 -111 -33 144 -208 -53 109 -30 -108 -11 -1064 170 -1064 -1064 -191 -1064 183 -1064 -1064 -188 183 -211 -91 -30 124 -1064 -1064 212 -1064 47 -1064 -88 92 21 -33 44 -49 -111 -1064 -1064 173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 16 E= 1.2e+003 0.687500 0.062500 0.250000 0.000000 0.312500 0.187500 0.062500 0.437500 0.250000 0.000000 0.750000 0.000000 0.625000 0.062500 0.187500 0.125000 0.000000 0.062500 0.937500 0.000000 0.500000 0.062500 0.000000 0.437500 0.125000 0.187500 0.625000 0.062500 0.187500 0.500000 0.187500 0.125000 0.250000 0.000000 0.750000 0.000000 0.000000 0.062500 0.000000 0.937500 0.000000 0.000000 0.062500 0.937500 0.062500 0.125000 0.187500 0.625000 0.000000 0.000000 1.000000 0.000000 0.375000 0.000000 0.125000 0.500000 0.312500 0.187500 0.312500 0.187500 0.125000 0.000000 0.000000 0.875000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [AG][TA][GA]AG[AT]GC[GA]TTTG[TA][AG]T -------------------------------------------------------------------------------- Time 13.67 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 31753 2.87e-04 237_[+3(2.80e-06)]_55_\ [+1(1.27e-05)]_180 9619 3.73e-03 45_[+1(3.79e-05)]_116_\ [+3(2.03e-05)]_311 46351 4.88e-06 138_[+2(1.13e-07)]_85_\ [+1(6.61e-06)]_253 46456 2.82e-06 129_[+1(7.81e-06)]_145_\ [+2(8.51e-06)]_143_[+3(2.04e-06)]_43 13240 6.58e-03 305_[+3(4.54e-06)]_179 47207 2.18e-01 405_[+1(7.52e-05)]_83 47866 6.03e-04 201_[+2(4.81e-06)]_248_\ [+1(1.41e-05)]_27 47917 3.56e-03 46_[+3(6.54e-06)]_438 47957 1.02e-01 178_[+1(4.95e-05)]_310 48242 1.69e-05 199_[+3(1.29e-05)]_38_\ [+2(3.18e-07)]_235 48985 6.18e-02 500 23646 3.87e-07 6_[+2(5.91e-06)]_304_[+3(2.16e-08)]_\ 162 30908 2.32e-04 72_[+3(6.53e-07)]_172_\ [+1(3.79e-05)]_228 50115 4.09e-07 143_[+1(4.32e-07)]_56_\ [+3(2.03e-05)]_39_[+2(1.80e-06)]_222 55153 1.43e-05 112_[+1(9.50e-05)]_50_\ [+2(2.12e-07)]_261_[+3(4.31e-05)]_37 44825 2.86e-01 150_[+1(9.50e-05)]_338 51806 4.14e-06 24_[+3(1.64e-06)]_81_[+2(4.81e-06)]_\ 154_[+1(2.64e-05)]_201 45612 6.88e-03 26_[+3(4.98e-06)]_458 46156 3.89e-06 289_[+1(4.91e-06)]_30_\ [+3(7.15e-06)]_104_[+2(5.51e-06)]_37 38665 1.50e-03 139_[+1(1.47e-06)]_220_\ [+2(7.18e-05)]_117 43408 6.18e-04 140_[+3(2.80e-06)]_182_\ [+1(2.64e-05)]_150 40368 1.84e-03 158_[+1(7.81e-06)]_155_\ [+3(3.79e-05)]_159 50111 7.82e-04 351_[+1(8.19e-05)]_81_\ [+3(2.27e-06)]_40 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************