******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/370/370.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 42851 1.0000 500 13005 1.0000 500 47802 1.0000 500 38662 1.0000 500 49101 1.0000 500 49545 1.0000 500 50149 1.0000 500 41079 1.0000 500 5629 1.0000 500 10976 1.0000 500 44806 1.0000 500 45346 1.0000 500 45808 1.0000 500 46382 1.0000 500 38849 1.0000 500 48898 1.0000 500 48987 1.0000 500 47171 1.0000 500 41192 1.0000 500 45003 1.0000 500 47165 1.0000 500 37452 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/370/370.seqs.fa -oc motifs/370 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 22 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 11000 N= 22 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.268 C 0.226 G 0.233 T 0.273 Background letter frequencies (from dataset with add-one prior applied): A 0.268 C 0.226 G 0.233 T 0.273 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 15 sites = 22 llr = 222 E-value = 5.9e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :44::17:3::2932 pos.-specific C :535:3:a:::3:21 probability G 3:11::3::a:3:4: matrix T 7113a6::7:a3:17 bits 2.1 * 1.9 * * * 1.7 * * ** 1.5 * * ** Relative 1.3 * * ** * Entropy 1.1 * ***** * (14.5 bits) 0.9 * * ***** * 0.6 ** * ***** * * 0.4 ** ******** * * 0.2 *********** *** 0.0 --------------- Multilevel TCACTTACTGTCAGT consensus GACT CG A G A sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- 48987 24 2.97e-07 GCGATGCAAA TAACTCACTGTAAGT ATTTTTTCTA 42851 371 5.11e-07 GCTCAAAATT GCCTTTACTGTTAGT TGATATGACT 49545 397 5.97e-07 TTGCTCTCCT TCCCTTACTGTAAGA CACATTCTAT 47802 259 5.97e-07 AACACAGTCC TAATTTACTGTTACT TACATTCCAA 44806 55 7.04e-07 ATATCGACGT TACGTTACTGTTAGT TACCGTTAAT 47171 272 1.64e-06 GTAGGAAGAA TAGCTTACAGTCAAT GTCCATGATT 10976 118 2.69e-06 ATGTAAATTG TAACTCACTGTCACC ATTGTTTTCT 49101 109 3.80e-06 ACAATGGTCA TCATTTGCTGTTAGA CATACTAATG 37452 160 4.70e-06 TGTAAGTATG TCACTTACTGTGTAT GAAGGACTGG 45346 297 4.70e-06 CTCCGGTTTC TCTGTCACTGTCAAT TCGAAGTCAA 38849 68 6.38e-06 TTATTCAGAG GCCTTTGCAGTCAAT ACGATAGTGA 46382 185 9.29e-06 AAGAAAAAAT TAGCTGACTGTGAAT GTGACGCGTT 47165 240 1.02e-05 CATCAAAATA TTTCTTACAGTTAGT ATCAATTGAC 50149 80 1.11e-05 TGGTCTGAAG TCGTTAACTGTAAGT TCTTTCTGTT 41079 293 1.56e-05 ACCGGAATGT TACGTTGCTGTGACC TTTTTGTCAT 45003 352 2.31e-05 GCGTCTCCTT ACCTTCACAGTCAGT TGTCTTTGAA 38662 131 2.87e-05 ACGGTGGAAT GAACTAACTGTAACA GCAACTATCA 41192 290 3.30e-05 CCTACATTTG TCAATTACAGTTAAC AGGAATTAAA 45808 440 3.78e-05 CTTCATTTTT GTACTCACAGTCAAA TCATGCCACT 48898 397 4.05e-05 TCTTTGTGAT TACCTTGCTGCGATT GACGGCATCC 13005 317 4.92e-05 GTGCGCTACT GCTCTTGCTGTGCCT CCTCTTCCTC 5629 138 7.92e-05 ATTGTTTCCC GCACTCGCTCTGATT TTCGCCGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 48987 3e-07 23_[+1]_462 42851 5.1e-07 370_[+1]_115 49545 6e-07 396_[+1]_89 47802 6e-07 258_[+1]_227 44806 7e-07 54_[+1]_431 47171 1.6e-06 271_[+1]_214 10976 2.7e-06 117_[+1]_368 49101 3.8e-06 108_[+1]_377 37452 4.7e-06 159_[+1]_326 45346 4.7e-06 296_[+1]_189 38849 6.4e-06 67_[+1]_418 46382 9.3e-06 184_[+1]_301 47165 1e-05 239_[+1]_246 50149 1.1e-05 79_[+1]_406 41079 1.6e-05 292_[+1]_193 45003 2.3e-05 351_[+1]_134 38662 2.9e-05 130_[+1]_355 41192 3.3e-05 289_[+1]_196 45808 3.8e-05 439_[+1]_46 48898 4.1e-05 396_[+1]_89 13005 4.9e-05 316_[+1]_169 5629 7.9e-05 137_[+1]_348 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=15 seqs=22 48987 ( 24) TAACTCACTGTAAGT 1 42851 ( 371) GCCTTTACTGTTAGT 1 49545 ( 397) TCCCTTACTGTAAGA 1 47802 ( 259) TAATTTACTGTTACT 1 44806 ( 55) TACGTTACTGTTAGT 1 47171 ( 272) TAGCTTACAGTCAAT 1 10976 ( 118) TAACTCACTGTCACC 1 49101 ( 109) TCATTTGCTGTTAGA 1 37452 ( 160) TCACTTACTGTGTAT 1 45346 ( 297) TCTGTCACTGTCAAT 1 38849 ( 68) GCCTTTGCAGTCAAT 1 46382 ( 185) TAGCTGACTGTGAAT 1 47165 ( 240) TTTCTTACAGTTAGT 1 50149 ( 80) TCGTTAACTGTAAGT 1 41079 ( 293) TACGTTGCTGTGACC 1 45003 ( 352) ACCTTCACAGTCAGT 1 38662 ( 131) GAACTAACTGTAACA 1 41192 ( 290) TCAATTACAGTTAAC 1 45808 ( 440) GTACTCACAGTCAAA 1 48898 ( 397) TACCTTGCTGCGATT 1 13005 ( 317) GCTCTTGCTGTGCCT 1 5629 ( 138) GCACTCGCTCTGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 10692 bayes= 9.27758 E= 5.9e-009 -256 -1110 23 132 61 114 -1110 -158 61 49 -77 -100 -256 127 -77 0 -1110 -1110 -1110 187 -156 27 -236 111 144 -1110 23 -1110 -1110 214 -1110 -1110 3 -1110 -1110 141 -1110 -231 203 -1110 -1110 -231 -1110 181 -56 27 23 0 176 -231 -1110 -258 25 1 64 -158 -56 -73 -1110 132 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 22 E= 5.9e-009 0.045455 0.000000 0.272727 0.681818 0.409091 0.500000 0.000000 0.090909 0.409091 0.318182 0.136364 0.136364 0.045455 0.545455 0.136364 0.272727 0.000000 0.000000 0.000000 1.000000 0.090909 0.272727 0.045455 0.590909 0.727273 0.000000 0.272727 0.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.000000 0.000000 0.727273 0.000000 0.045455 0.954545 0.000000 0.000000 0.045455 0.000000 0.954545 0.181818 0.272727 0.272727 0.272727 0.909091 0.045455 0.000000 0.045455 0.318182 0.227273 0.363636 0.090909 0.181818 0.136364 0.000000 0.681818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [TG][CA][AC][CT]T[TC][AG]C[TA]GT[CGT]A[GAC]T -------------------------------------------------------------------------------- Time 4.41 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 16 sites = 22 llr = 204 E-value = 3.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :12::2:2::1:13:: pos.-specific C 9:::332::2:61131 probability G 15::236:42::641: matrix T :58a531866942259 bits 2.1 1.9 1.7 * 1.5 * * * * Relative 1.3 * * * * * Entropy 1.1 * * * ** * (13.4 bits) 0.9 * ** ** ** * 0.6 **** ******* * 0.4 ***** ******* ** 0.2 ***** ********** 0.0 ---------------- Multilevel CGTTTCGTTTTCGGTT consensus T CGC G T AC sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 48987 367 5.70e-09 AGCTTGTCTC CTTTTCGTTTTCGATT CGGGCTTGCT 50149 96 2.61e-07 ACTGTAAGTT CTTTCTGTTTTCTGTT GCTGGTCAAA 37452 251 3.09e-07 CTCGTGAGTG CGTTGGGTTTTTGTTT CGTTGCAGGA 10976 241 1.01e-06 CGGAAATGTA CTTTTGCTTCTCGTTT GCATTGACAT 41079 359 2.18e-06 ACTTCTATTT GGTTCCGTTTTCGACT CCAACCCTCC 47171 354 4.40e-06 CCTGGACTGC CGTTTGCTTTTTCGCT CGGCATGTTC 45808 366 4.40e-06 GAGGCTTCCG CGTTTCCTTTACGTTT CACTACGTCT 38849 12 1.02e-05 TACTGTACGG CGGTTGTTGTTCGGTT GCTACTGACT 49101 142 1.02e-05 TGATCCGCCA CTTTGACTTTTTGAGT CAGCAATTGC 41192 331 1.50e-05 ATGGTATTCA CGATTACAGTTCGATT CTCAGCAACG 38662 294 1.97e-05 CCGTTATGGA CGTTGTGTGTTTTTGT AAGGACGACA 47802 158 2.56e-05 TCCTATGGGG CGTTCGGTAGTCGAGT GTGTATATTG 48898 46 3.04e-05 ACAATGCTAC ATTTTCGTGTTCAGTT GGTTGAGTTC 45346 148 3.04e-05 TTCTTGGGAT GTTTTTGTGTTTGGTC CGTGATGCCG 44806 280 4.57e-05 CGTAAACACG CTATGGGTTGTTGCCT GTGAAGAAAT 42851 92 4.93e-05 CGAACCACCA CTTTTTGAGGTCAACT TGAGGTTGTA 45003 231 5.33e-05 CTACGATTAC CGTCTTTTTGTTGGTT TGATTCCTCC 46382 403 5.75e-05 AGCACTCTCA CATTCAGTTTTCTATC AAGGACTCTC 47165 77 7.72e-05 TATCGGCGGG CTTTCCAAGTTCCGTT CGGCTGTGGC 49545 381 1.09e-04 ACCGTAAATC CTTTCATTGCTCTCCT TCCCTTACTG 13005 97 1.42e-04 TTTCAGGAGT CAATCCGTTCTTGGAT GCCAAATCAA 5629 158 2.19e-04 TGATTTTCGC CGATTTGATCATGTCT ACGGCGTATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 48987 5.7e-09 366_[+2]_118 50149 2.6e-07 95_[+2]_389 37452 3.1e-07 250_[+2]_234 10976 1e-06 240_[+2]_244 41079 2.2e-06 358_[+2]_126 47171 4.4e-06 353_[+2]_131 45808 4.4e-06 365_[+2]_119 38849 1e-05 11_[+2]_473 49101 1e-05 141_[+2]_343 41192 1.5e-05 330_[+2]_154 38662 2e-05 293_[+2]_191 47802 2.6e-05 157_[+2]_327 48898 3e-05 45_[+2]_439 45346 3e-05 147_[+2]_337 44806 4.6e-05 279_[+2]_205 42851 4.9e-05 91_[+2]_393 45003 5.3e-05 230_[+2]_254 46382 5.8e-05 402_[+2]_82 47165 7.7e-05 76_[+2]_408 49545 0.00011 380_[+2]_104 13005 0.00014 96_[+2]_388 5629 0.00022 157_[+2]_327 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=16 seqs=22 48987 ( 367) CTTTTCGTTTTCGATT 1 50149 ( 96) CTTTCTGTTTTCTGTT 1 37452 ( 251) CGTTGGGTTTTTGTTT 1 10976 ( 241) CTTTTGCTTCTCGTTT 1 41079 ( 359) GGTTCCGTTTTCGACT 1 47171 ( 354) CGTTTGCTTTTTCGCT 1 45808 ( 366) CGTTTCCTTTACGTTT 1 38849 ( 12) CGGTTGTTGTTCGGTT 1 49101 ( 142) CTTTGACTTTTTGAGT 1 41192 ( 331) CGATTACAGTTCGATT 1 38662 ( 294) CGTTGTGTGTTTTTGT 1 47802 ( 158) CGTTCGGTAGTCGAGT 1 48898 ( 46) ATTTTCGTGTTCAGTT 1 45346 ( 148) GTTTTTGTGTTTGGTC 1 44806 ( 280) CTATGGGTTGTTGCCT 1 42851 ( 92) CTTTTTGAGGTCAACT 1 45003 ( 231) CGTCTTTTTGTTGGTT 1 46382 ( 403) CATTCAGTTTTCTATC 1 47165 ( 77) CTTTCCAAGTTCCGTT 1 49545 ( 381) CTTTCATTGCTCTCCT 1 13005 ( 97) CAATCCGTTCTTGGAT 1 5629 ( 158) CGATTTGATCATGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 10670 bayes= 8.91886 E= 3.9e+001 -256 193 -136 -1110 -156 -1110 96 74 -56 -1110 -236 150 -1110 -231 -1110 181 -1110 49 -36 87 -56 27 23 0 -256 1 134 -100 -56 -1110 -1110 158 -256 -1110 64 111 -1110 -31 -36 122 -156 -1110 -1110 174 -1110 138 -1110 58 -156 -131 145 -59 25 -131 64 -26 -256 27 -77 100 -1110 -131 -1110 174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 22 E= 3.9e+001 0.045455 0.863636 0.090909 0.000000 0.090909 0.000000 0.454545 0.454545 0.181818 0.000000 0.045455 0.772727 0.000000 0.045455 0.000000 0.954545 0.000000 0.318182 0.181818 0.500000 0.181818 0.272727 0.272727 0.272727 0.045455 0.227273 0.590909 0.136364 0.181818 0.000000 0.000000 0.818182 0.045455 0.000000 0.363636 0.590909 0.000000 0.181818 0.181818 0.636364 0.090909 0.000000 0.000000 0.909091 0.000000 0.590909 0.000000 0.409091 0.090909 0.090909 0.636364 0.181818 0.318182 0.090909 0.363636 0.227273 0.045455 0.272727 0.136364 0.545455 0.000000 0.090909 0.000000 0.909091 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- C[GT]TT[TC][CGT][GC]T[TG]TT[CT]G[GAT][TC]T -------------------------------------------------------------------------------- Time 8.84 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 20 sites = 12 llr = 158 E-value = 4.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 14913::3931625365927 pos.-specific C :::9:1:::222525::183 probability G 361:29:8133321:43::: matrix T 7:::6:a::25:233:2::1 bits 2.1 1.9 * 1.7 * ** 1.5 ** ** * ** Relative 1.3 ** **** ** Entropy 1.1 *** **** * ** (19.0 bits) 0.9 *** **** * *** 0.6 **** **** * * *** 0.4 ********* * ****** 0.2 ********* ********** 0.0 -------------------- Multilevel TGACTGTGAATACACAAACA consensus GA A A GGG TAGG C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 47802 297 1.70e-09 TAGACTCGGT TGACAGTGAGTAGACGGACA AGCACACAAA 10976 202 2.39e-09 GGGAAATCGA TGACTGTGATTGCCCAAACA ACGAGAACCC 38662 64 3.27e-08 AGAGAGAGAC TGACGGTGAATATTAAAACA ATGTATAACT 47171 415 6.60e-08 CGTCCCGGCG GAACTCTGAGCACACAAACA AAGTGTTCGT 42851 68 2.98e-07 GATGTTACAT TAGCAGTAAATACACGAACC ACCACTTTTT 49545 354 4.61e-07 CCCTCGTCGT TGACTGTAAGGACGTATACC GTAAATCCTT 46382 455 5.91e-07 ATTGTCGAAC TGACTGTGAACCTTTGTACA CCAGAGTAGG 41192 168 6.92e-07 ATATACCTCT AGACTGTGACTAGAAAGAAA TTGCGCCGAG 45808 228 1.26e-06 TAATAGTTTT TAACGGTAAAGCCAAAAACT ACTTACAGTT 45346 346 1.45e-06 GAAGTTCGTG GGACTGTGAGAGCCCAGCCC GTGAGTGCCG 38849 242 2.61e-06 GTTGTATATG TAAATGTGACGAATCGAAAA AATTTATTTA 41079 116 3.32e-06 GATTGCTACA GAACAGTGGTTGAATGGACA TATGTACACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 47802 1.7e-09 296_[+3]_184 10976 2.4e-09 201_[+3]_279 38662 3.3e-08 63_[+3]_417 47171 6.6e-08 414_[+3]_66 42851 3e-07 67_[+3]_413 49545 4.6e-07 353_[+3]_127 46382 5.9e-07 454_[+3]_26 41192 6.9e-07 167_[+3]_313 45808 1.3e-06 227_[+3]_253 45346 1.4e-06 345_[+3]_135 38849 2.6e-06 241_[+3]_239 41079 3.3e-06 115_[+3]_365 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=20 seqs=12 47802 ( 297) TGACAGTGAGTAGACGGACA 1 10976 ( 202) TGACTGTGATTGCCCAAACA 1 38662 ( 64) TGACGGTGAATATTAAAACA 1 47171 ( 415) GAACTCTGAGCACACAAACA 1 42851 ( 68) TAGCAGTAAATACACGAACC 1 49545 ( 354) TGACTGTAAGGACGTATACC 1 46382 ( 455) TGACTGTGAACCTTTGTACA 1 41192 ( 168) AGACTGTGACTAGAAAGAAA 1 45808 ( 228) TAACGGTAAAGCCAAAAACT 1 45346 ( 346) GGACTGTGAGAGCCCAGCCC 1 38849 ( 242) TAAATGTGACGAATCGAAAA 1 41079 ( 116) GAACAGTGGTTGAATGGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 10582 bayes= 10.2306 E= 4.2e+001 -168 -1023 10 129 64 -1023 132 -1023 177 -1023 -148 -1023 -168 202 -1023 -1023 -10 -1023 -48 110 -1023 -144 197 -1023 -1023 -1023 -1023 187 -10 -1023 169 -1023 177 -1023 -148 -1023 32 -44 52 -71 -168 -44 10 87 112 -44 10 -1023 -68 114 -48 -71 90 -44 -148 -13 -10 114 -1023 -13 112 -1023 84 -1023 90 -1023 52 -71 177 -144 -1023 -1023 -68 188 -1023 -1023 131 14 -1023 -171 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 12 E= 4.2e+001 0.083333 0.000000 0.250000 0.666667 0.416667 0.000000 0.583333 0.000000 0.916667 0.000000 0.083333 0.000000 0.083333 0.916667 0.000000 0.000000 0.250000 0.000000 0.166667 0.583333 0.000000 0.083333 0.916667 0.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.750000 0.000000 0.916667 0.000000 0.083333 0.000000 0.333333 0.166667 0.333333 0.166667 0.083333 0.166667 0.250000 0.500000 0.583333 0.166667 0.250000 0.000000 0.166667 0.500000 0.166667 0.166667 0.500000 0.166667 0.083333 0.250000 0.250000 0.500000 0.000000 0.250000 0.583333 0.000000 0.416667 0.000000 0.500000 0.000000 0.333333 0.166667 0.916667 0.083333 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.666667 0.250000 0.000000 0.083333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [TG][GA]AC[TA]GT[GA]A[AG][TG][AG]C[AT][CAT][AG][AG]AC[AC] -------------------------------------------------------------------------------- Time 13.21 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 42851 2.02e-07 67_[+3(2.98e-07)]_4_[+2(4.93e-05)]_\ 186_[+1(7.92e-05)]_62_[+1(5.11e-07)]_115 13005 3.09e-02 316_[+1(4.92e-05)]_169 47802 1.11e-09 157_[+2(2.56e-05)]_85_\ [+1(5.97e-07)]_23_[+3(1.70e-09)]_184 38662 4.57e-07 63_[+3(3.27e-08)]_47_[+1(2.87e-05)]_\ 148_[+2(1.97e-05)]_191 49101 3.79e-04 108_[+1(3.80e-06)]_18_\ [+2(1.02e-05)]_343 49545 7.03e-07 353_[+3(4.61e-07)]_23_\ [+1(5.97e-07)]_89 50149 7.88e-05 79_[+1(1.11e-05)]_1_[+2(2.61e-07)]_\ 389 41079 2.35e-06 115_[+3(3.32e-06)]_157_\ [+1(1.56e-05)]_51_[+2(2.18e-06)]_126 5629 4.49e-02 137_[+1(7.92e-05)]_348 10976 3.08e-10 117_[+1(2.69e-06)]_69_\ [+3(2.39e-09)]_19_[+2(1.01e-06)]_244 44806 2.27e-04 54_[+1(7.04e-07)]_210_\ [+2(4.57e-05)]_205 45346 4.03e-06 147_[+2(3.04e-05)]_133_\ [+1(4.70e-06)]_34_[+3(1.45e-06)]_135 45808 4.07e-06 227_[+3(1.26e-06)]_118_\ [+2(4.40e-06)]_58_[+1(3.78e-05)]_46 46382 5.82e-06 184_[+1(9.29e-06)]_203_\ [+2(5.75e-05)]_36_[+3(5.91e-07)]_26 38849 3.38e-06 11_[+2(1.02e-05)]_40_[+1(6.38e-06)]_\ 159_[+3(2.61e-06)]_59_[+1(5.24e-05)]_165 48898 5.05e-03 45_[+2(3.04e-05)]_335_\ [+1(4.05e-05)]_89 48987 1.95e-08 23_[+1(2.97e-07)]_328_\ [+2(5.70e-09)]_118 47171 1.64e-08 271_[+1(1.64e-06)]_67_\ [+2(4.40e-06)]_45_[+3(6.60e-08)]_66 41192 6.29e-06 167_[+3(6.92e-07)]_102_\ [+1(3.30e-05)]_26_[+2(1.50e-05)]_154 45003 1.18e-02 230_[+2(5.33e-05)]_105_\ [+1(2.31e-05)]_134 47165 7.77e-03 76_[+2(7.72e-05)]_147_\ [+1(1.02e-05)]_246 37452 2.30e-05 159_[+1(4.70e-06)]_76_\ [+2(3.09e-07)]_234 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************