******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/395/395.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 42484 1.0000 500 9200 1.0000 500 36359 1.0000 500 5288 1.0000 500 46645 1.0000 500 46865 1.0000 500 28482 1.0000 500 52208 1.0000 500 14003 1.0000 500 37632 1.0000 500 6789 1.0000 500 47991 1.0000 500 48117 1.0000 500 48215 1.0000 500 5099 1.0000 500 51511 1.0000 500 49058 1.0000 500 40152 1.0000 500 15870 1.0000 500 16105 1.0000 500 52661 1.0000 500 41003 1.0000 500 4634 1.0000 500 16827 1.0000 500 5508 1.0000 500 33380 1.0000 500 33394 1.0000 500 50605 1.0000 500 3296 1.0000 500 44797 1.0000 500 44799 1.0000 500 11352 1.0000 500 19669 1.0000 500 35200 1.0000 500 45606 1.0000 500 45663 1.0000 500 45874 1.0000 500 50367 1.0000 500 46195 1.0000 500 48256 1.0000 500 48267 1.0000 500 48292 1.0000 500 48568 1.0000 500 46952 1.0000 500 32629 1.0000 500 48184 1.0000 500 34079 1.0000 500 43623 1.0000 500 52325 1.0000 500 46112 1.0000 500 34746 1.0000 500 46079 1.0000 500 49124 1.0000 500 45726 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/395/395.seqs.fa -oc motifs/395 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 54 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 27000 N= 54 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.271 C 0.247 G 0.227 T 0.255 Background letter frequencies (from dataset with add-one prior applied): A 0.271 C 0.247 G 0.227 T 0.255 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 12 sites = 34 llr = 325 E-value = 2.0e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 4:::9:3:::93 pos.-specific C 14:5:9::13:3 probability G 11:5::2a:7:3 matrix T 55a11:5:9::1 bits 2.1 * 1.9 * * 1.7 * * ** 1.5 * ** ** * Relative 1.3 * ** **** Entropy 1.1 * ** **** (13.8 bits) 0.9 **** **** 0.6 ***** **** 0.4 *********** 0.2 ************ 0.0 ------------ Multilevel TTTCACTGTGAA consensus AC G A C G sequence G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 45663 426 2.21e-07 AAATTAATCT TTTGACTGTGAA TCCGTCGCGT 48568 148 8.76e-07 GGTAGTTGTT TCTGACTGTGAC ACTGAATATC 47991 227 8.76e-07 TTGACATGAT ATTGACTGTGAA CGACTTGATT 48267 158 1.71e-06 AGTATCTGGG ACTGACTGTGAC AATGATTCTT 50605 76 1.71e-06 ACGTTAACTG TCTGACAGTGAG AGGACAGATA 33380 449 2.18e-06 TATTTCACGA ATTGACAGTGAG AAGTCCACTC 52661 34 2.18e-06 AGAAAGTCTA ATTGACAGTGAG ACTTTAGAGT 48292 146 2.64e-06 CCGTGCCCGC TCTCACGGTGAG CCCAGCCCCC 9200 114 2.64e-06 CGTGACCGGA TTTCACGGTGAA GTTGAGTTTG 44797 218 3.92e-06 AGTGGGCCTT TCTCACTGTCAG TCTTTCGATC 33394 93 5.04e-06 TTCCAAGCTC TCTCACTGTCAA CAACGAGAAA 35200 253 7.80e-06 ACAAAGCGTG ACTGACTGTGAT ATGAGAGTAC 45726 187 1.00e-05 TTTGTATTGT ATTCACGGTCAA GGCTAACTAT 37632 238 1.00e-05 GGACAGACTT ATTCACAGTCAC GTGAACTAAC 46952 222 1.29e-05 CTCCTTGGAT CCTGACTGTGAA AGGAGGAGCG 46195 360 1.40e-05 ACAACAATCG GTTCACTGTCAG TTGCATTTTC 44799 374 1.40e-05 CCACGTTTTT TCTCTCTGTGAG TTGTTAGCCC 5508 482 1.40e-05 TTACAGGTTT TCTCACTGTCAT TTCCAAC 42484 260 1.40e-05 ACACGGTAGC GCTGACAGTGAA TCAATTTGCA 34079 38 1.86e-05 GCACACGGGT TGTCACAGTGAA AACGGATGGC 40152 220 1.86e-05 CTTGACTGAC TTTGACTGCGAA AAATAAGCCG 52208 338 1.86e-05 AGGCGCCATT CTTGACAGTGAC GAACTCTTCA 43623 285 2.48e-05 CCGCGTATGC TTTGTCGGTGAC TATGGGCGTG 34746 157 3.21e-05 CTGCATCAGC TTTGATTGTGAG AGAGTTTCGC 14003 187 3.21e-05 AGTCGACGCC GTTCACGGTCAC CGCGACGTCA 41003 384 3.50e-05 GACACTTCTA TTTGACAGCGAC AGTGACGATG 46865 334 3.50e-05 GAGAATTTCA ACTTACGGTGAA AGCTGCCATT 46079 459 3.78e-05 TCGTATTGTG ATTGACTGTGTG TGATCCAGCA 51511 279 3.78e-05 GTCGCTGGCG TATCACAGTGAG TCGGTACTCG 15870 207 6.01e-05 CCGAAAGAGA ACTCACCGTCAG GTTGCTCTCT 48117 385 6.43e-05 AATGATTGTC ATTTACGGTCAC TAACGCCCAG 45606 457 8.46e-05 TTACCATGAT TCTCTCTGTCAT CTACTGTCAG 48215 276 9.41e-05 CCCATGTCTT ATTCAGTGTCAC GCCAAACAAT 4634 51 2.23e-04 TTGCCTGTAC AGTCACAGTGGA AAAACCGTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 45663 2.2e-07 425_[+1]_63 48568 8.8e-07 147_[+1]_341 47991 8.8e-07 226_[+1]_262 48267 1.7e-06 157_[+1]_331 50605 1.7e-06 75_[+1]_413 33380 2.2e-06 448_[+1]_40 52661 2.2e-06 33_[+1]_455 48292 2.6e-06 145_[+1]_343 9200 2.6e-06 113_[+1]_375 44797 3.9e-06 217_[+1]_271 33394 5e-06 92_[+1]_396 35200 7.8e-06 252_[+1]_236 45726 1e-05 186_[+1]_302 37632 1e-05 237_[+1]_251 46952 1.3e-05 221_[+1]_267 46195 1.4e-05 359_[+1]_129 44799 1.4e-05 373_[+1]_115 5508 1.4e-05 481_[+1]_7 42484 1.4e-05 259_[+1]_229 34079 1.9e-05 37_[+1]_451 40152 1.9e-05 219_[+1]_269 52208 1.9e-05 337_[+1]_151 43623 2.5e-05 284_[+1]_204 34746 3.2e-05 156_[+1]_332 14003 3.2e-05 186_[+1]_302 41003 3.5e-05 383_[+1]_105 46865 3.5e-05 333_[+1]_155 46079 3.8e-05 458_[+1]_30 51511 3.8e-05 278_[+1]_210 15870 6e-05 206_[+1]_282 48117 6.4e-05 384_[+1]_104 45606 8.5e-05 456_[+1]_32 48215 9.4e-05 275_[+1]_213 4634 0.00022 50_[+1]_438 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=12 seqs=34 45663 ( 426) TTTGACTGTGAA 1 48568 ( 148) TCTGACTGTGAC 1 47991 ( 227) ATTGACTGTGAA 1 48267 ( 158) ACTGACTGTGAC 1 50605 ( 76) TCTGACAGTGAG 1 33380 ( 449) ATTGACAGTGAG 1 52661 ( 34) ATTGACAGTGAG 1 48292 ( 146) TCTCACGGTGAG 1 9200 ( 114) TTTCACGGTGAA 1 44797 ( 218) TCTCACTGTCAG 1 33394 ( 93) TCTCACTGTCAA 1 35200 ( 253) ACTGACTGTGAT 1 45726 ( 187) ATTCACGGTCAA 1 37632 ( 238) ATTCACAGTCAC 1 46952 ( 222) CCTGACTGTGAA 1 46195 ( 360) GTTCACTGTCAG 1 44799 ( 374) TCTCTCTGTGAG 1 5508 ( 482) TCTCACTGTCAT 1 42484 ( 260) GCTGACAGTGAA 1 34079 ( 38) TGTCACAGTGAA 1 40152 ( 220) TTTGACTGCGAA 1 52208 ( 338) CTTGACAGTGAC 1 43623 ( 285) TTTGTCGGTGAC 1 34746 ( 157) TTTGATTGTGAG 1 14003 ( 187) GTTCACGGTCAC 1 41003 ( 384) TTTGACAGCGAC 1 46865 ( 334) ACTTACGGTGAA 1 46079 ( 459) ATTGACTGTGTG 1 51511 ( 279) TATCACAGTGAG 1 15870 ( 207) ACTCACCGTCAG 1 48117 ( 385) ATTTACGGTCAC 1 45606 ( 457) TCTCTCTGTCAT 1 48215 ( 276) ATTCAGTGTCAC 1 4634 ( 51) AGTCACAGTGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 26406 bayes= 9.66888 E= 2.0e-010 50 -207 -136 88 -320 74 -194 97 -1173 -1173 -1173 197 -1173 93 105 -212 175 -1173 -1173 -153 -1173 193 -294 -312 12 -307 -14 88 -1173 -1173 214 -1173 -1173 -207 -1173 188 -1173 39 158 -1173 179 -1173 -294 -312 25 10 51 -153 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 34 E= 2.0e-010 0.382353 0.058824 0.088235 0.470588 0.029412 0.411765 0.058824 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.470588 0.470588 0.058824 0.911765 0.000000 0.000000 0.088235 0.000000 0.941176 0.029412 0.029412 0.294118 0.029412 0.205882 0.470588 0.000000 0.000000 1.000000 0.000000 0.000000 0.058824 0.000000 0.941176 0.000000 0.323529 0.676471 0.000000 0.941176 0.000000 0.029412 0.029412 0.323529 0.264706 0.323529 0.088235 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [TA][TC]T[CG]AC[TAG]GT[GC]A[AGC] -------------------------------------------------------------------------------- Time 22.80 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 20 sites = 17 llr = 222 E-value = 8.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 3a5956286826:a265628 pos.-specific C ::5:21513152::7::46: probability G 6:113312112:9:144:22 matrix T 1:::::2::1121:::1::: bits 2.1 1.9 * * 1.7 * ** 1.5 * ** Relative 1.3 * * ** Entropy 1.1 * * ** * * (18.9 bits) 0.9 ** * * * * **** * * 0.6 ****** *** ********* 0.4 ****** ************* 0.2 ******************** 0.0 -------------------- Multilevel GAAAAACAAACAGACAAACA consensus A C GGA C A AGGCGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 48267 54 4.19e-11 CTGACAAACA GACAAACACACAGACAGACA GAACTATCCA 5508 214 1.06e-09 TCCTGCTTTG GACAAGCAAACAGACGGACG GAGGATCACT 45874 172 4.44e-09 GGGCCAAATC AACACACACACAGACAGACA CAGCGAAGAC 45606 335 1.09e-08 GAAATGATTT GACGGATAAACAGACAGACA TGATGCATAC 44799 292 1.09e-08 AGTCGAGTAG GAAAGAAGAACAGACGACCA TGGCGTACAA 46865 125 3.73e-07 ACGTTCAATT GACAAGGAAACAGAAAACAG AAAACGGATC 34079 227 8.76e-07 TCGAAGATGT TACAAACAAAATGACAGAGG TTCTAGACTC 46195 189 9.48e-07 TTCCGCTGCG AACAAATAAGCAGAGAAACA CCGCGTGGTA 33394 295 1.20e-06 GGGGGCGAGT GAAAAACACTGAGACGTCGA GGTTGGGAAG 35200 474 1.29e-06 TTAATCAAAG GAAAAGCAAATCTACAGACA CCGTGAG 3296 365 1.29e-06 GTAAAGTCTC GAAACAAGCAAAGAAGAAGA TCGATGCTTT 50605 136 1.29e-06 CAAGCGGCAA AACAGCCAAAATGAAAAACA GAACAGTAAA 34746 386 1.50e-06 CAGTCCCAAT GAAAAAACGACAGACATCGA AACTGCATCT 46112 177 1.86e-06 TTCGATCGAA GAGAGAGAGAGAGAAAACCA CCGAACTCGT 37632 341 1.86e-06 TATATGTTTG AAAACGAGAACCGACGAAAA TGTTTCGTAA 40152 63 2.29e-06 CGTAAACGAC AAAGAATAAAGTGACGGCAA TGTGGTTGTC 51511 241 2.45e-06 GCACGGGCTG GAAAGGCACCACGACGACCG TCGCGCGAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 48267 4.2e-11 53_[+2]_427 5508 1.1e-09 213_[+2]_267 45874 4.4e-09 171_[+2]_309 45606 1.1e-08 334_[+2]_146 44799 1.1e-08 291_[+2]_189 46865 3.7e-07 124_[+2]_356 34079 8.8e-07 226_[+2]_254 46195 9.5e-07 188_[+2]_292 33394 1.2e-06 294_[+2]_186 35200 1.3e-06 473_[+2]_7 3296 1.3e-06 364_[+2]_116 50605 1.3e-06 135_[+2]_345 34746 1.5e-06 385_[+2]_95 46112 1.9e-06 176_[+2]_304 37632 1.9e-06 340_[+2]_140 40152 2.3e-06 62_[+2]_418 51511 2.4e-06 240_[+2]_240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=20 seqs=17 48267 ( 54) GACAAACACACAGACAGACA 1 5508 ( 214) GACAAGCAAACAGACGGACG 1 45874 ( 172) AACACACACACAGACAGACA 1 45606 ( 335) GACGGATAAACAGACAGACA 1 44799 ( 292) GAAAGAAGAACAGACGACCA 1 46865 ( 125) GACAAGGAAACAGAAAACAG 1 34079 ( 227) TACAAACAAAATGACAGAGG 1 46195 ( 189) AACAAATAAGCAGAGAAACA 1 33394 ( 295) GAAAAACACTGAGACGTCGA 1 35200 ( 474) GAAAAGCAAATCTACAGACA 1 3296 ( 365) GAAACAAGCAAAGAAGAAGA 1 50605 ( 136) AACAGCCAAAATGAAAAACA 1 34746 ( 386) GAAAAAACGACAGACATCGA 1 46112 ( 177) GAGAGAGAGAGAGAAAACCA 1 37632 ( 341) AAAACGAGAACCGACGAAAA 1 40152 ( 63) AAAGAATAAAGTGACGGCAA 1 51511 ( 241) GAAAGGCACCACGACGACCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 25974 bayes= 11.3715 E= 8.4e+000 12 -1073 151 -212 188 -1073 -1073 -1073 79 93 -194 -1073 170 -1073 -94 -1073 96 -48 38 -1073 125 -207 38 -1073 -21 93 -94 -53 149 -207 -36 -1073 112 25 -94 -1073 160 -207 -194 -212 -21 110 -36 -212 125 -48 -1073 -53 -1073 -1073 205 -212 188 -1073 -1073 -1073 -21 152 -194 -1073 112 -1073 86 -1073 79 -1073 86 -112 112 74 -1073 -1073 -62 125 5 -1073 149 -1073 5 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 17 E= 8.4e+000 0.294118 0.000000 0.647059 0.058824 1.000000 0.000000 0.000000 0.000000 0.470588 0.470588 0.058824 0.000000 0.882353 0.000000 0.117647 0.000000 0.529412 0.176471 0.294118 0.000000 0.647059 0.058824 0.294118 0.000000 0.235294 0.470588 0.117647 0.176471 0.764706 0.058824 0.176471 0.000000 0.588235 0.294118 0.117647 0.000000 0.823529 0.058824 0.058824 0.058824 0.235294 0.529412 0.176471 0.058824 0.647059 0.176471 0.000000 0.176471 0.000000 0.000000 0.941176 0.058824 1.000000 0.000000 0.000000 0.000000 0.235294 0.705882 0.058824 0.000000 0.588235 0.000000 0.411765 0.000000 0.470588 0.000000 0.411765 0.117647 0.588235 0.411765 0.000000 0.000000 0.176471 0.588235 0.235294 0.000000 0.764706 0.000000 0.235294 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [GA]A[AC]A[AG][AG][CA]A[AC]A[CA]AGA[CA][AG][AG][AC][CG][AG] -------------------------------------------------------------------------------- Time 45.53 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 15 sites = 3 llr = 57 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :a::::::::::::: pos.-specific C a:a:::3:a:7:a:: probability G :::a:373:a3a:aa matrix T ::::a7:7::::::: bits 2.1 * * * ** 1.9 ***** ** **** 1.7 ***** ** **** 1.5 ***** ** **** Relative 1.3 ***** * ** **** Entropy 1.1 *************** (27.2 bits) 0.9 *************** 0.6 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel CACGTTGTCGCGCGG consensus GCG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- 11352 358 2.09e-09 CCGAAACAGG CACGTTGGCGCGCGG CCCACTTCTT 43623 374 2.71e-09 GCCCTACTTG CACGTTCTCGCGCGG GCTCGTCTGC 16105 149 4.08e-09 AAACACCGTA CACGTGGTCGGGCGG GACCGGTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 11352 2.1e-09 357_[+3]_128 43623 2.7e-09 373_[+3]_112 16105 4.1e-09 148_[+3]_337 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=15 seqs=3 11352 ( 358) CACGTTGGCGCGCGG 1 43623 ( 374) CACGTTCTCGCGCGG 1 16105 ( 149) CACGTGGTCGGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 26244 bayes= 13.5421 E= 1.0e+004 -823 202 -823 -823 188 -823 -823 -823 -823 202 -823 -823 -823 -823 214 -823 -823 -823 -823 197 -823 -823 56 138 -823 43 155 -823 -823 -823 56 138 -823 202 -823 -823 -823 -823 214 -823 -823 143 56 -823 -823 -823 214 -823 -823 202 -823 -823 -823 -823 214 -823 -823 -823 214 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 3 E= 1.0e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- CACGT[TG][GC][TG]CG[CG]GCGG -------------------------------------------------------------------------------- Time 70.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 42484 4.86e-02 259_[+1(1.40e-05)]_229 9200 1.56e-02 113_[+1(2.64e-06)]_375 36359 4.59e-01 500 5288 9.00e-01 500 46645 6.61e-01 500 46865 2.70e-04 124_[+2(3.73e-07)]_189_\ [+1(3.50e-05)]_155 28482 4.15e-01 500 52208 1.44e-02 337_[+1(1.86e-05)]_151 14003 1.41e-02 186_[+1(3.21e-05)]_302 37632 3.16e-04 237_[+1(1.00e-05)]_91_\ [+2(1.86e-06)]_140 6789 9.68e-01 500 47991 1.15e-02 226_[+1(8.76e-07)]_118_\ [+1(8.46e-05)]_132 48117 8.21e-02 384_[+1(6.43e-05)]_104 48215 2.19e-01 275_[+1(9.41e-05)]_213 5099 2.47e-01 500 51511 7.34e-04 240_[+2(2.45e-06)]_18_\ [+1(3.78e-05)]_210 49058 7.39e-01 500 40152 7.65e-04 62_[+2(2.29e-06)]_137_\ [+1(1.86e-05)]_269 15870 1.14e-01 206_[+1(6.01e-05)]_282 16105 8.74e-05 148_[+3(4.08e-09)]_337 52661 2.42e-02 12_[+1(1.09e-05)]_9_[+1(2.18e-06)]_\ 211_[+1(2.48e-05)]_232 41003 2.92e-02 383_[+1(3.50e-05)]_105 4634 1.43e-01 500 16827 9.11e-01 500 5508 2.91e-07 213_[+2(1.06e-09)]_248_\ [+1(1.40e-05)]_7 33380 4.67e-03 448_[+1(2.18e-06)]_40 33394 1.01e-04 92_[+1(5.04e-06)]_1_[+2(6.47e-05)]_\ 169_[+2(1.20e-06)]_186 50605 5.91e-05 75_[+1(1.71e-06)]_48_[+2(1.29e-06)]_\ 345 3296 2.00e-02 364_[+2(1.29e-06)]_116 44797 1.15e-02 217_[+1(3.92e-06)]_271 44799 4.61e-06 291_[+2(1.09e-08)]_62_\ [+1(1.40e-05)]_115 11352 2.71e-05 357_[+3(2.09e-09)]_128 19669 4.18e-01 500 35200 2.29e-04 252_[+1(7.80e-06)]_209_\ [+2(1.29e-06)]_7 45606 2.76e-05 334_[+2(1.09e-08)]_102_\ [+1(8.46e-05)]_32 45663 4.45e-03 425_[+1(2.21e-07)]_63 45874 6.36e-05 171_[+2(4.44e-09)]_309 50367 5.87e-01 500 46195 2.26e-04 188_[+2(9.48e-07)]_151_\ [+1(1.40e-05)]_129 48256 2.00e-01 500 48267 3.01e-09 53_[+2(4.19e-11)]_49_[+1(7.80e-06)]_\ 23_[+1(1.71e-06)]_31_[+1(1.29e-05)]_288 48292 4.64e-03 145_[+1(2.64e-06)]_62_\ [+1(5.62e-06)]_269 48568 1.15e-02 147_[+1(8.76e-07)]_341 46952 5.69e-02 221_[+1(1.29e-05)]_267 32629 6.19e-01 500 48184 6.61e-01 500 34079 2.31e-04 37_[+1(1.86e-05)]_177_\ [+2(8.76e-07)]_254 43623 2.84e-06 284_[+1(2.48e-05)]_77_\ [+3(2.71e-09)]_112 52325 2.34e-01 500 46112 8.57e-03 176_[+2(1.86e-06)]_304 34746 5.79e-04 156_[+1(3.21e-05)]_217_\ [+2(1.50e-06)]_95 46079 1.34e-01 458_[+1(3.78e-05)]_30 49124 8.61e-01 500 45726 5.02e-02 186_[+1(1.00e-05)]_302 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************