******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/396/396.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 42474 1.0000 500 42642 1.0000 500 42942 1.0000 500 46353 1.0000 500 46366 1.0000 500 13192 1.0000 500 1155 1.0000 500 1457 1.0000 500 14403 1.0000 500 14607 1.0000 500 48066 1.0000 500 48177 1.0000 500 38974 1.0000 500 15341 1.0000 500 48912 1.0000 500 43450 1.0000 500 51174 1.0000 500 49385 1.0000 500 15935 1.0000 500 49641 1.0000 500 40731 1.0000 500 50174 1.0000 500 24019 1.0000 500 10659 1.0000 500 44212 1.0000 500 10704 1.0000 500 44944 1.0000 500 45081 1.0000 500 26837 1.0000 500 45376 1.0000 500 45898 1.0000 500 46051 1.0000 500 20608 1.0000 500 42432 1.0000 500 39147 1.0000 500 48813 1.0000 500 43218 1.0000 500 49326 1.0000 500 48071 1.0000 500 47277 1.0000 500 49664 1.0000 500 48972 1.0000 500 45713 1.0000 500 32507 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/396/396.seqs.fa -oc motifs/396 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 44 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 22000 N= 44 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.267 C 0.263 G 0.229 T 0.241 Background letter frequencies (from dataset with add-one prior applied): A 0.267 C 0.263 G 0.229 T 0.241 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 12 sites = 21 llr = 225 E-value = 2.5e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :::a:6:::862 pos.-specific C 3:4:9:::5::1 probability G 1:6:::a:5241 matrix T 5a::14:a:::6 bits 2.1 * 1.9 * * * 1.7 * * ** 1.5 * ** ** Relative 1.3 * ** ** * Entropy 1.1 ********** (15.4 bits) 0.9 ********** 0.6 *********** 0.4 ************ 0.2 ************ 0.0 ------------ Multilevel TTGACAGTGAAT consensus C C T C GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 45898 302 2.12e-07 CGTTCGGCGT TTGACTGTGAAT AGCTAGGTAC 48912 282 2.12e-07 TTCAACGGTA TTGACTGTGAAT CCCATTCTCT 45081 105 3.63e-07 TCCTCTACTC TTGACTGTGAGT ACTCGCTTTC 46366 395 7.04e-07 AGAGGGGGGA CTGACAGTGAGT CTTCGTTTCG 50174 253 1.28e-06 TTATCTATAG TTCACAGTCAGT CCGACAAGGC 15341 83 1.28e-06 AAAGGCTAAG TTGACAGTGAAA GCCTACGGAC 49385 118 2.38e-06 CGGTAGGTCT GTGACTGTGAAT GCGAACGGGG 45376 273 2.69e-06 AGCATTCCCT CTCACTGTCAAT TCACATGAAT 40731 337 3.34e-06 GACAGGTCCA CTGACTGTGAAA ACACCGTGCA 32507 433 4.18e-06 TCTCTCTTCA TTGACAGTCAAG CTAGCACACG 26837 213 6.24e-06 ATTATTCACC GTCACAGTCAGT CATGCCGTGC 48071 429 7.46e-06 ATACATCCAA TTGACTGTGGAA CAAAGCAATT 44212 387 8.91e-06 GAATGTGTTG CTCACAGTCGAT GTCAGCATCC 48177 401 9.56e-06 GATTGGAAGA TTCACAGTCAGG GCAATCGACC 10659 412 1.32e-05 GGATCGATTC TTGACAATGAAT TTATTCCACG 48066 271 1.32e-05 AGGAGTCTCT TTCATAGTCAGT GTCAGTCAAT 46353 189 1.42e-05 GAGGAATGCT CTCACAGTCAAC TCTTTGGCAC 42942 177 1.42e-05 GGGCGTTTGC TTCACAGTCGGA CTACCTAACT 43450 10 2.12e-05 CCATGCCAA CTGACAGTCGAC TTTTCTGTGC 42642 252 2.26e-05 CAAGTCGGTT CTGACTGAGAGT GGCTTGGATG 43218 202 3.49e-05 GGGATTCGAA GTGATTGTGAGA TGCTAATATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 45898 2.1e-07 301_[+1]_187 48912 2.1e-07 281_[+1]_207 45081 3.6e-07 104_[+1]_384 46366 7e-07 394_[+1]_94 50174 1.3e-06 252_[+1]_236 15341 1.3e-06 82_[+1]_406 49385 2.4e-06 117_[+1]_371 45376 2.7e-06 272_[+1]_216 40731 3.3e-06 336_[+1]_152 32507 4.2e-06 432_[+1]_56 26837 6.2e-06 212_[+1]_276 48071 7.5e-06 428_[+1]_60 44212 8.9e-06 386_[+1]_102 48177 9.6e-06 400_[+1]_88 10659 1.3e-05 411_[+1]_77 48066 1.3e-05 270_[+1]_218 46353 1.4e-05 188_[+1]_300 42942 1.4e-05 176_[+1]_312 43450 2.1e-05 9_[+1]_479 42642 2.3e-05 251_[+1]_237 43218 3.5e-05 201_[+1]_287 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=12 seqs=21 45898 ( 302) TTGACTGTGAAT 1 48912 ( 282) TTGACTGTGAAT 1 45081 ( 105) TTGACTGTGAGT 1 46366 ( 395) CTGACAGTGAGT 1 50174 ( 253) TTCACAGTCAGT 1 15341 ( 83) TTGACAGTGAAA 1 49385 ( 118) GTGACTGTGAAT 1 45376 ( 273) CTCACTGTCAAT 1 40731 ( 337) CTGACTGTGAAA 1 32507 ( 433) TTGACAGTCAAG 1 26837 ( 213) GTCACAGTCAGT 1 48071 ( 429) TTGACTGTGGAA 1 44212 ( 387) CTCACAGTCGAT 1 48177 ( 401) TTCACAGTCAGG 1 10659 ( 412) TTGACAATGAAT 1 48066 ( 271) TTCATAGTCAGT 1 46353 ( 189) CTCACAGTCAAC 1 42942 ( 177) TTCACAGTCGGA 1 43450 ( 10) CTGACAGTCGAC 1 42642 ( 252) CTGACTGAGAGT 1 43218 ( 202) GTGATTGTGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 21516 bayes= 11.5051 E= 2.5e-005 -1104 34 -68 112 -1104 -1104 -1104 205 -1104 53 144 -1104 191 -1104 -1104 -1104 -1104 178 -1104 -134 110 -1104 -1104 83 -248 -1104 206 -1104 -248 -1104 -1104 198 -1104 86 119 -1104 160 -1104 -26 -1104 110 -1104 90 -1104 -16 -147 -126 124 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 21 E= 2.5e-005 0.000000 0.333333 0.142857 0.523810 0.000000 0.000000 0.000000 1.000000 0.000000 0.380952 0.619048 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.904762 0.000000 0.095238 0.571429 0.000000 0.000000 0.428571 0.047619 0.000000 0.952381 0.000000 0.047619 0.000000 0.000000 0.952381 0.000000 0.476190 0.523810 0.000000 0.809524 0.000000 0.190476 0.000000 0.571429 0.000000 0.428571 0.000000 0.238095 0.095238 0.095238 0.571429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [TC]T[GC]AC[AT]GT[GC]A[AG][TA] -------------------------------------------------------------------------------- Time 15.85 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 15 sites = 24 llr = 248 E-value = 2.6e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :7aa1:6437432:9 pos.-specific C 8:::9:26312:33: probability G 23:::82:4:25561 matrix T :::::2:::123::: bits 2.1 1.9 ** 1.7 ** 1.5 **** * Relative 1.3 * **** * Entropy 1.1 ****** * (14.9 bits) 0.9 ****** * ** 0.6 ****** * * *** 0.4 ********** **** 0.2 ********** **** 0.0 --------------- Multilevel CAAACGACGAAGGGA consensus G CAC CACC sequence A GT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- 45713 321 1.11e-09 GTCTCTTAAA CAAACGACGAAGGGA TTCCAATCGT 45376 243 1.25e-07 AAAGGACACA CGAACGACCAAGGCA ACGGAAGCAT 48813 320 1.55e-06 CAGAACAAAG CAAACGCCGAGACGA GCGTAACGAC 43450 464 1.55e-06 GTTTTCTTGC CAAAAGAACAAGGGA GCTTGATGCA 13192 354 1.98e-06 TCTCGTAGTT CGAACGACCCATGGA GGCACCATGG 15935 299 2.23e-06 ATGCCCGGCA CAAACGACGAACCGA CGGAACGGTG 51174 248 2.52e-06 AGACAAAGTT CGAACTACAAATGGA AGCCGCAATG 45081 145 3.16e-06 CTACTACAGA CAAACGGCAAGACGA GGAAGCGCTC 50174 183 4.36e-06 ACGTGGGAAG CGAACGCAAAAAGCA CAGCCCCCAA 39147 443 5.93e-06 CTTGCAACGA CAAAAGACAAGGGCA ACTTGAGCGC 49385 294 5.93e-06 TTCGTTGGCA CGAACGCACAGTCGA GAGGAATGGC 42432 352 7.20e-06 CACGAACGAT CGAACGAAGGAAGGA GCAAAAACCA 20608 35 9.52e-06 CCGTCATTTA GGAACTACGATGGGA GTCGCTGACA 15341 139 9.52e-06 GTTTCACAGT CAAACGGAGTTTGGA ATAGGGGACG 48066 303 9.52e-06 CCACAGCCCA CAAACGCAGTTAGGA CGACGCCCTT 48912 24 1.24e-05 ATCCAGAGAA CAAACTGACAAGAGA CGGAGAAAGC 10704 256 1.34e-05 TAAGGAGGAC CAAACGAACAAACAA ACAAACAATC 48177 357 1.34e-05 CGCCCCGTCA CAAACGACCATGACG ATGGAAACAT 42474 294 1.58e-05 ACCGTGTACG CAAACTGCGTCGGGA CCCACCCACC 40731 219 2.00e-05 CCATTGGATC CAAACGACCACTACG ACAGCCAGCC 46353 47 2.00e-05 ACCCCGTGCC GAAACGAAACCGCGA CTTTTTTCAC 43218 74 2.68e-05 TTGAGCGATG GAAACGTCAAGGGCA CGACACGAAT 1457 244 4.00e-05 GATCGTACCC GAAACGCCGCCGCCA CCTGGACCAT 46051 297 4.52e-05 GGAATTTCCT CGAACGAAAACTACG CCCACGGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 45713 1.1e-09 320_[+2]_165 45376 1.2e-07 242_[+2]_243 48813 1.6e-06 319_[+2]_166 43450 1.6e-06 463_[+2]_22 13192 2e-06 353_[+2]_132 15935 2.2e-06 298_[+2]_187 51174 2.5e-06 247_[+2]_238 45081 3.2e-06 144_[+2]_341 50174 4.4e-06 182_[+2]_303 39147 5.9e-06 442_[+2]_43 49385 5.9e-06 293_[+2]_192 42432 7.2e-06 351_[+2]_134 20608 9.5e-06 34_[+2]_451 15341 9.5e-06 138_[+2]_347 48066 9.5e-06 302_[+2]_183 48912 1.2e-05 23_[+2]_462 10704 1.3e-05 255_[+2]_230 48177 1.3e-05 356_[+2]_129 42474 1.6e-05 293_[+2]_192 40731 2e-05 218_[+2]_267 46353 2e-05 46_[+2]_439 43218 2.7e-05 73_[+2]_412 1457 4e-05 243_[+2]_242 46051 4.5e-05 296_[+2]_189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=15 seqs=24 45713 ( 321) CAAACGACGAAGGGA 1 45376 ( 243) CGAACGACCAAGGCA 1 48813 ( 320) CAAACGCCGAGACGA 1 43450 ( 464) CAAAAGAACAAGGGA 1 13192 ( 354) CGAACGACCCATGGA 1 15935 ( 299) CAAACGACGAACCGA 1 51174 ( 248) CGAACTACAAATGGA 1 45081 ( 145) CAAACGGCAAGACGA 1 50174 ( 183) CGAACGCAAAAAGCA 1 39147 ( 443) CAAAAGACAAGGGCA 1 49385 ( 294) CGAACGCACAGTCGA 1 42432 ( 352) CGAACGAAGGAAGGA 1 20608 ( 35) GGAACTACGATGGGA 1 15341 ( 139) CAAACGGAGTTTGGA 1 48066 ( 303) CAAACGCAGTTAGGA 1 48912 ( 24) CAAACTGACAAGAGA 1 10704 ( 256) CAAACGAACAAACAA 1 48177 ( 357) CAAACGACCATGACG 1 42474 ( 294) CAAACTGCGTCGGGA 1 40731 ( 219) CAAACGACCACTACG 1 46353 ( 47) GAAACGAAACCGCGA 1 43218 ( 74) GAAACGTCAAGGGCA 1 1457 ( 244) GAAACGCCGCCGCCA 1 46051 ( 297) CGAACGAAAACTACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 21384 bayes= 10.2456 E= 2.6e-001 -1123 166 -46 -1123 132 -1123 54 -1123 191 -1123 -1123 -1123 191 -1123 -1123 -1123 -168 180 -1123 -1123 -1123 -1123 186 -53 113 -34 -46 -253 64 115 -1123 -1123 13 34 71 -1123 141 -107 -245 -95 64 -34 -14 -53 -9 -266 100 5 -68 15 124 -1123 -268 34 145 -1123 171 -1123 -87 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 24 E= 2.6e-001 0.000000 0.833333 0.166667 0.000000 0.666667 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.583333 0.208333 0.166667 0.041667 0.416667 0.583333 0.000000 0.000000 0.291667 0.333333 0.375000 0.000000 0.708333 0.125000 0.041667 0.125000 0.416667 0.208333 0.208333 0.166667 0.250000 0.041667 0.458333 0.250000 0.166667 0.291667 0.541667 0.000000 0.041667 0.333333 0.625000 0.000000 0.875000 0.000000 0.125000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- C[AG]AACG[AC][CA][GCA]A[ACG][GAT][GC][GC]A -------------------------------------------------------------------------------- Time 32.35 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 20 sites = 14 llr = 190 E-value = 3.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :13141:6:296127633:8 pos.-specific C 9::4292:a811881:549: probability G :4741:81:::1::1:1::2 matrix T 15::4::2:::11::4131: bits 2.1 1.9 * 1.7 * 1.5 * * Relative 1.3 * * ** *** * ** Entropy 1.1 * * ** *** ** * ** (19.5 bits) 0.9 *** ** *** **** ** 0.6 **** ****** **** ** 0.4 **** ****** **** *** 0.2 ******************** 0.0 -------------------- Multilevel CTGCACGACCAACCAACCCA consensus GAGT CT A A TAA G sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 49326 100 1.25e-09 TCAATCGAAT CTGCGCGACCAACCAACACA ACCTTGCCCG 1155 383 4.09e-09 TCCCATTGGA CGAGTCGACCAGCCAACACA CCGACAGCCG 48066 10 9.68e-09 CGGAGGGGG CTGGACGACCCACCAACTCG GACCAACCGC 45376 161 4.60e-08 AACGAACCAA CTAACCCACCAACCAACCCA CCAACCCTAG 38974 291 9.69e-08 CAACGAGGTT CTGCTCGTCCAAACATATCA ATATGTCGAC 50174 266 1.18e-07 ACAGTCAGTC CGACAAGGCCAACCAAACCA TCTTTGACAT 49664 380 1.43e-07 TAACTCTAGT CTGGACGACCAACCGTGACG TCCCGACCGT 46353 252 3.22e-07 TACAACAATA CGACACGACAAGCAATCACA CACACAGATA 48912 112 3.50e-07 GCGTTGGAAT CGGGTCGACCAATAAATTTA CCGGTAAACT 13192 271 4.14e-07 TCTCTCAAGT CTGGACCACAATCCGTCTCA CCACCAGCAA 15935 441 4.49e-07 GATGGAACTC CTGACCGTCCACCCCAACCA ACAGCAACAA 24019 51 1.88e-06 CCCGCCTGGA CAGCCAGACCCTCCATCCCA AGCCCCACCT 45898 274 2.13e-06 CAACGGTGAT TGGGTCCGCCAACAAAACCG TTCGGCGTTT 20608 438 6.29e-06 AAGTTTTCGT CGGCTCGTCAACTCCATCTA AAGTTGCCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 49326 1.3e-09 99_[+3]_381 1155 4.1e-09 382_[+3]_98 48066 9.7e-09 9_[+3]_471 45376 4.6e-08 160_[+3]_320 38974 9.7e-08 290_[+3]_190 50174 1.2e-07 265_[+3]_215 49664 1.4e-07 379_[+3]_101 46353 3.2e-07 251_[+3]_229 48912 3.5e-07 111_[+3]_369 13192 4.1e-07 270_[+3]_210 15935 4.5e-07 440_[+3]_40 24019 1.9e-06 50_[+3]_430 45898 2.1e-06 273_[+3]_207 20608 6.3e-06 437_[+3]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=20 seqs=14 49326 ( 100) CTGCGCGACCAACCAACACA 1 1155 ( 383) CGAGTCGACCAGCCAACACA 1 48066 ( 10) CTGGACGACCCACCAACTCG 1 45376 ( 161) CTAACCCACCAACCAACCCA 1 38974 ( 291) CTGCTCGTCCAAACATATCA 1 50174 ( 266) CGACAAGGCCAACCAAACCA 1 49664 ( 380) CTGGACGACCAACCGTGACG 1 46353 ( 252) CGACACGACAAGCAATCACA 1 48912 ( 112) CGGGTCGACCAATAAATTTA 1 13192 ( 271) CTGGACCACAATCCGTCTCA 1 15935 ( 441) CTGACCGTCCACCCCAACCA 1 24019 ( 51) CAGCCAGACCCTCCATCCCA 1 45898 ( 274) TGGGTCCGCCAACAAAACCG 1 20608 ( 438) CGGCTCGTCAACTCCATCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 21164 bayes= 10.4048 E= 3.0e+001 -1045 182 -1045 -175 -190 -1045 90 105 10 -1045 164 -1045 -90 70 90 -1045 42 -30 -168 57 -90 170 -1045 -1045 -1045 -30 178 -1045 127 -1045 -68 -17 -1045 193 -1045 -1045 -32 158 -1045 -1045 168 -88 -1045 -1045 110 -88 -68 -75 -190 158 -1045 -75 -32 158 -1045 -1045 142 -88 -68 -1045 127 -1045 -1045 57 10 93 -168 -75 10 70 -1045 24 -1045 170 -1045 -75 156 -1045 -9 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 14 E= 3.0e+001 0.000000 0.928571 0.000000 0.071429 0.071429 0.000000 0.428571 0.500000 0.285714 0.000000 0.714286 0.000000 0.142857 0.428571 0.428571 0.000000 0.357143 0.214286 0.071429 0.357143 0.142857 0.857143 0.000000 0.000000 0.000000 0.214286 0.785714 0.000000 0.642857 0.000000 0.142857 0.214286 0.000000 1.000000 0.000000 0.000000 0.214286 0.785714 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.571429 0.142857 0.142857 0.142857 0.071429 0.785714 0.000000 0.142857 0.214286 0.785714 0.000000 0.000000 0.714286 0.142857 0.142857 0.000000 0.642857 0.000000 0.000000 0.357143 0.285714 0.500000 0.071429 0.142857 0.285714 0.428571 0.000000 0.285714 0.000000 0.857143 0.000000 0.142857 0.785714 0.000000 0.214286 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- C[TG][GA][CG][ATC]C[GC][AT]C[CA]AAC[CA]A[AT][CA][CAT]C[AG] -------------------------------------------------------------------------------- Time 47.64 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 42474 2.05e-02 293_[+2(1.58e-05)]_192 42642 5.33e-02 251_[+1(2.26e-05)]_237 42942 3.66e-02 158_[+1(5.33e-05)]_6_[+1(1.42e-05)]_\ 312 46353 1.95e-06 46_[+2(2.00e-05)]_127_\ [+1(1.42e-05)]_51_[+3(3.22e-07)]_229 46366 3.49e-03 394_[+1(7.04e-07)]_94 13192 1.37e-05 270_[+3(4.14e-07)]_63_\ [+2(1.98e-06)]_132 1155 1.57e-04 382_[+3(4.09e-09)]_98 1457 1.57e-01 243_[+2(4.00e-05)]_242 14403 2.56e-01 500 14607 6.42e-01 500 48066 3.89e-08 9_[+3(9.68e-09)]_241_[+1(1.32e-05)]_\ 20_[+2(9.52e-06)]_69_[+3(8.60e-05)]_94 48177 5.15e-04 356_[+2(1.34e-05)]_29_\ [+1(9.56e-06)]_88 38974 1.62e-03 290_[+3(9.69e-08)]_190 15341 1.42e-04 82_[+1(1.28e-06)]_36_[+1(3.67e-06)]_\ 358 48912 3.01e-08 23_[+2(1.24e-05)]_73_[+3(3.50e-07)]_\ 150_[+1(2.12e-07)]_207 43450 5.71e-04 9_[+1(2.12e-05)]_442_[+2(1.55e-06)]_\ 22 51174 1.82e-02 247_[+2(2.52e-06)]_238 49385 1.98e-04 117_[+1(2.38e-06)]_32_\ [+1(3.78e-05)]_120_[+2(5.93e-06)]_192 15935 1.78e-05 298_[+2(2.23e-06)]_127_\ [+3(4.49e-07)]_40 49641 5.87e-01 500 40731 7.04e-04 218_[+2(2.00e-05)]_103_\ [+1(3.34e-06)]_152 50174 2.23e-08 182_[+2(4.36e-06)]_55_\ [+1(1.28e-06)]_1_[+3(1.18e-07)]_215 24019 1.89e-02 50_[+3(1.88e-06)]_283_\ [+3(9.49e-05)]_80_[+3(9.18e-05)]_27 10659 5.26e-02 411_[+1(1.32e-05)]_77 44212 1.21e-02 386_[+1(8.91e-06)]_102 10704 2.51e-03 35_[+1(9.41e-05)]_208_\ [+2(1.34e-05)]_230 44944 7.92e-02 264_[+3(4.04e-05)]_216 45081 8.89e-06 104_[+1(3.63e-07)]_28_\ [+2(3.16e-06)]_121_[+2(6.73e-05)]_205 26837 2.63e-03 212_[+1(6.24e-06)]_276 45376 6.96e-10 141_[+1(3.94e-05)]_7_[+3(4.60e-08)]_\ 62_[+2(1.25e-07)]_15_[+1(2.69e-06)]_216 45898 8.63e-06 273_[+3(2.13e-06)]_8_[+1(2.12e-07)]_\ 187 46051 4.56e-02 296_[+2(4.52e-05)]_189 20608 4.86e-04 34_[+2(9.52e-06)]_388_\ [+3(6.29e-06)]_43 42432 2.02e-02 351_[+2(7.20e-06)]_134 39147 3.72e-02 442_[+2(5.93e-06)]_43 48813 4.93e-03 319_[+2(1.55e-06)]_166 43218 8.15e-04 73_[+2(2.68e-05)]_113_\ [+1(3.49e-05)]_287 49326 1.46e-05 99_[+3(1.25e-09)]_381 48071 3.26e-02 428_[+1(7.46e-06)]_60 47277 3.41e-01 500 49664 8.80e-04 379_[+3(1.43e-07)]_101 48972 4.00e-03 340_[+3(2.55e-05)]_140 45713 2.89e-05 320_[+2(1.11e-09)]_165 32507 9.82e-03 432_[+1(4.18e-06)]_56 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************