******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/476/476.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 42423 1.0000 500 42955 1.0000 500 46573 1.0000 500 37052 1.0000 500 37053 1.0000 500 47674 1.0000 500 48697 1.0000 500 48753 1.0000 500 54105 1.0000 500 49854 1.0000 500 40300 1.0000 500 48438 1.0000 500 32129 1.0000 500 44583 1.0000 500 49640 1.0000 500 45637 1.0000 500 44890 1.0000 500 46947 1.0000 500 49209 1.0000 500 47547 1.0000 500 49907 1.0000 500 39546 1.0000 500 33763 1.0000 500 44265 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/476/476.seqs.fa -oc motifs/476 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 24 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 12000 N= 24 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.285 C 0.226 G 0.207 T 0.283 Background letter frequencies (from dataset with add-one prior applied): A 0.285 C 0.226 G 0.207 T 0.283 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 16 sites = 23 llr = 222 E-value = 5.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 1:::3775::4::311 pos.-specific C :::621::1::932:2 probability G 12:431::1a::4:2: matrix T 88a:11248:513477 bits 2.3 2.0 * 1.8 * * 1.6 * * Relative 1.4 * * * Entropy 1.1 *** * * (13.9 bits) 0.9 *** ** * * 0.7 **** ******* * 0.5 **** ******** ** 0.2 **************** 0.0 ---------------- Multilevel TTTCAAAATGTCGTTT consensus G GG T A CA C sequence C TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 48438 233 2.86e-08 GTAGGGCTTG TTTCGAAATGTCTATT TCATCTGTAG 46573 119 3.72e-07 CTCTGATATT TGTGAAATTGTCTTTT TTCAGATATT 33763 257 8.69e-07 GCAAGCATGC TTTCCTATTGTCGTTT GCTTGGAGCA 47547 34 8.69e-07 GCTCCCAACA TTTGAAATTGTCGAAT AGTTAATCAT 48753 235 1.00e-06 TTCGGAGAAT GTTCGAAATGACCCTT ATACCGGTGG 44890 264 1.14e-06 TGTCCGTGAT GTTCAAAATGACTTTT CGTTATCGTC 46947 306 1.30e-06 GACCCCTCAG TGTCAAAACGTCGTTT GCGCTACATT 49854 171 1.89e-06 GACGCCAAAA TTTCAAAATGACCCTA TGGCCTCATT 42423 163 4.92e-06 AGTACAATAT TTTGGAAATGACTTGA TTAAAGGTAG 49640 365 8.10e-06 TTTCTACCTC TTTCCAATCGACTTGT TTTGTTACGT 48697 432 9.85e-06 ACACAAAAAG TTTGAAGTTGACCATC GATCATAACA 37052 10 1.08e-05 AGTGCTTTT TTTGCAATTGACGGGC ATCTTCATCG 40300 476 1.73e-05 GGGTGCTCCT TTTCAATTTGTTGATC GCAAACAAA 54105 340 2.06e-05 AGTCCATACG ATTGGAAATGCCTCTT TGTATAGAAA 49907 318 2.25e-05 ATACCATAAT TTTGGCAAGGACCATC GAAACAGCCT 47674 168 2.90e-05 CTGCTATATA TTTGGGTGTGTCGCTT GGCTTGATAT 44265 184 3.99e-05 ATTGATCCGC TGTCGGTTGGTCGATT ATTGCGTAAC 42955 12 4.66e-05 GGATTTCGCG TGTCTAATTGACAATC GGGATCAATC 32129 153 6.31e-05 CTGTGTTGCG TTTGCTTTTGTCGTTG GACGTAGACT 44583 224 6.79e-05 TTAGATACGT ATTCGAAATGTACTGT CTCACAGCCA 39546 179 8.44e-05 CACATGACTC CGTCAAAATTTCGATT CTAATTGCTG 49209 169 8.44e-05 ATCCTCTGGT TTTCTACATGTTCTTT GTCCAATACC 37053 473 1.66e-04 ATATGAGACG TTTGCCAAAGACGCAT AAAAAACAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 48438 2.9e-08 232_[+1]_252 46573 3.7e-07 118_[+1]_366 33763 8.7e-07 256_[+1]_228 47547 8.7e-07 33_[+1]_451 48753 1e-06 234_[+1]_250 44890 1.1e-06 263_[+1]_221 46947 1.3e-06 305_[+1]_179 49854 1.9e-06 170_[+1]_314 42423 4.9e-06 162_[+1]_322 49640 8.1e-06 364_[+1]_120 48697 9.8e-06 431_[+1]_53 37052 1.1e-05 9_[+1]_475 40300 1.7e-05 475_[+1]_9 54105 2.1e-05 339_[+1]_145 49907 2.3e-05 317_[+1]_167 47674 2.9e-05 167_[+1]_317 44265 4e-05 183_[+1]_301 42955 4.7e-05 11_[+1]_473 32129 6.3e-05 152_[+1]_332 44583 6.8e-05 223_[+1]_261 39546 8.4e-05 178_[+1]_306 49209 8.4e-05 168_[+1]_316 37053 0.00017 472_[+1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=16 seqs=23 48438 ( 233) TTTCGAAATGTCTATT 1 46573 ( 119) TGTGAAATTGTCTTTT 1 33763 ( 257) TTTCCTATTGTCGTTT 1 47547 ( 34) TTTGAAATTGTCGAAT 1 48753 ( 235) GTTCGAAATGACCCTT 1 44890 ( 264) GTTCAAAATGACTTTT 1 46947 ( 306) TGTCAAAACGTCGTTT 1 49854 ( 171) TTTCAAAATGACCCTA 1 42423 ( 163) TTTGGAAATGACTTGA 1 49640 ( 365) TTTCCAATCGACTTGT 1 48697 ( 432) TTTGAAGTTGACCATC 1 37052 ( 10) TTTGCAATTGACGGGC 1 40300 ( 476) TTTCAATTTGTTGATC 1 54105 ( 340) ATTGGAAATGCCTCTT 1 49907 ( 318) TTTGGCAAGGACCATC 1 47674 ( 168) TTTGGGTGTGTCGCTT 1 44265 ( 184) TGTCGGTTGGTCGATT 1 42955 ( 12) TGTCTAATTGACAATC 1 32129 ( 153) TTTGCTTTTGTCGTTG 1 44583 ( 224) ATTCGAAATGTACTGT 1 39546 ( 179) CGTCAAAATTTCGATT 1 49209 ( 169) TTTCTACATGTTCTTT 1 37053 ( 473) TTTGCCAAAGACGCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 11640 bayes= 9.38363 E= 5.5e-002 -171 -237 -125 147 -1117 -1117 7 147 -1117 -1117 -1117 182 -1117 132 107 -1117 29 -5 75 -170 137 -137 -125 -170 137 -237 -225 -70 87 -1117 -225 62 -271 -137 -125 147 -1117 -1117 221 -270 61 -237 -1117 88 -271 195 -1117 -170 -271 21 107 -12 29 -5 -225 47 -171 -1117 -25 139 -171 -5 -225 121 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 23 E= 5.5e-002 0.086957 0.043478 0.086957 0.782609 0.000000 0.000000 0.217391 0.782609 0.000000 0.000000 0.000000 1.000000 0.000000 0.565217 0.434783 0.000000 0.347826 0.217391 0.347826 0.086957 0.739130 0.086957 0.086957 0.086957 0.739130 0.043478 0.043478 0.173913 0.521739 0.000000 0.043478 0.434783 0.043478 0.086957 0.086957 0.782609 0.000000 0.000000 0.956522 0.043478 0.434783 0.043478 0.000000 0.521739 0.043478 0.869565 0.000000 0.086957 0.043478 0.260870 0.434783 0.260870 0.347826 0.217391 0.043478 0.391304 0.086957 0.000000 0.173913 0.739130 0.086957 0.217391 0.043478 0.652174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- T[TG]T[CG][AGC]AA[AT]TG[TA]C[GCT][TAC]T[TC] -------------------------------------------------------------------------------- Time 5.80 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 6 llr = 112 E-value = 1.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 8:::3::::2::2:::322:: pos.-specific C ::33:::25:3:5:a:5:::: probability G 25:7::::38:a:2::22822 matrix T :57:7aa82:7:38:a:7:88 bits 2.3 * 2.0 * * 1.8 ** * ** 1.6 ** * * ** * Relative 1.4 * ** * * ** * Entropy 1.1 ** * *** * * *** *** (26.9 bits) 0.9 ******** *** *** *** 0.7 ************ ******** 0.5 ********************* 0.2 ********************* 0.0 --------------------- Multilevel AGTGTTTTCGTGCTCTCTGTT consensus TCCA G C T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 48753 206 2.10e-10 AATTTCGGCA ATTGTTTTCGCGTGCTCTGTT CGGAGAATGT 32129 129 7.21e-10 ACTATTTATG ATCCATTTGGTGCTCTGTGTT GCGTTTGCTT 48697 72 7.21e-10 GCTCACAGTC AGTGTTTTCGTGTTCTCGATT CCGCACCGGT 33763 383 1.07e-09 GTCAACGAAC AGTCATTTCGCGATCTATGTT TAGAATGTCA 45637 214 6.08e-09 TGGGTGGCCA ATCGTTTTGATGCTCTCAGTG TTGCTGTAGA 47674 259 7.32e-09 ACAGTAAAAG GGTGTTTCTGTGCTCTATGGT CTGTTATTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 48753 2.1e-10 205_[+2]_274 32129 7.2e-10 128_[+2]_351 48697 7.2e-10 71_[+2]_408 33763 1.1e-09 382_[+2]_97 45637 6.1e-09 213_[+2]_266 47674 7.3e-09 258_[+2]_221 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=6 48753 ( 206) ATTGTTTTCGCGTGCTCTGTT 1 32129 ( 129) ATCCATTTGGTGCTCTGTGTT 1 48697 ( 72) AGTGTTTTCGTGTTCTCGATT 1 33763 ( 383) AGTCATTTCGCGATCTATGTT 1 45637 ( 214) ATCGTTTTGATGCTCTCAGTG 1 47674 ( 259) GGTGTTTCTGTGCTCTATGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 11520 bayes= 11.3538 E= 1.7e+001 155 -923 -31 -923 -923 -923 127 82 -923 56 -923 124 -923 56 169 -923 23 -923 -923 124 -923 -923 -923 182 -923 -923 -923 182 -923 -44 -923 156 -923 115 69 -76 -77 -923 201 -923 -923 56 -923 124 -923 -923 227 -923 -77 115 -923 24 -923 -923 -31 156 -923 215 -923 -923 -923 -923 -923 182 23 115 -31 -923 -77 -923 -31 124 -77 -923 201 -923 -923 -923 -31 156 -923 -923 -31 156 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 6 E= 1.7e+001 0.833333 0.000000 0.166667 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.333333 0.000000 0.666667 0.000000 0.333333 0.666667 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.500000 0.333333 0.166667 0.166667 0.000000 0.833333 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.166667 0.500000 0.000000 0.333333 0.000000 0.000000 0.166667 0.833333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.500000 0.166667 0.000000 0.166667 0.000000 0.166667 0.666667 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.166667 0.833333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- A[GT][TC][GC][TA]TTT[CG]G[TC]G[CT]TCT[CA]TGTT -------------------------------------------------------------------------------- Time 10.88 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 15 sites = 24 llr = 210 E-value = 3.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :2::38737a66752 pos.-specific C a3:25:25::21323 probability G ::9121:23:12::5 matrix T :6171:2:::11:31 bits 2.3 2.0 * 1.8 * * * 1.6 * * * Relative 1.4 * * * Entropy 1.1 * * * * * (12.6 bits) 0.9 * ** * ** * 0.7 * ** ** ** * 0.5 **** ***** ** 0.2 *************** 0.0 --------------- Multilevel CTGTCAACAAAAAAG consensus C CA AG CGCTC sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- 46573 53 1.10e-08 CCCGATACAA CTGTCAACAAAACAG ACGATGACTG 48438 86 9.04e-08 AGTTCACGCG CTGTAAAAAAAAAAG ACGTGTGAAA 42955 331 1.28e-06 TGAATAGTAG CTGTGAACGAAAACC AAAAAAACAA 44890 72 3.61e-06 AAGATGTCGA CTGTGAAGGAAAATC GAGAAAGATG 46947 469 6.99e-06 AGTAAAGATG CTGTTATAAAAAATG TTAACGCTCG 37053 19 1.01e-05 GATTTCAGCA CCGTCAACGAGGACG ATGAAGATGC 39546 310 1.27e-05 GTAGGCCTTA CTGTCACAAAATATC TTGCCCAGCT 32129 47 1.59e-05 GTCGCGCACA CTGTAGAAGAAAATC CCGTCTACCA 45637 319 1.77e-05 ATGACCTTAT CTGTCATAAATAATC TTCGTGCTCA 42423 456 1.97e-05 GCGCAGAAGG CCGCCACAAAAAACC CTTCTTTACC 47674 209 3.58e-05 GAACAGACAT CCTCAAACAAAAAAG TGGACATCAA 49209 213 3.93e-05 CGTGAAAGTA CTTTGAAAAACAATG CAAAATATTT 37052 162 4.31e-05 CAGTCAGGTC CCGGAACGAAAAAAG ACAAACTGTA 54105 297 4.72e-05 ATTCTCCATA CTGCAAACAAATCAA GTCTTGTTTG 47547 158 5.15e-05 GGTTGTTTCA CAGTCAATAATAAAG GGACATTCAA 48697 328 5.15e-05 TCAATTATTT CCGCTAACAAAACTA CACTAACCTT 48753 279 8.50e-05 GGAAATGTTC CTGTCGAGAATACAA AAAAGGATGA 49907 19 9.19e-05 AGCCCCGTAC CAGTCATCGAAGCAT CGCGCCGGGG 33763 112 1.07e-04 TCCCCCTGAC CTGTTGACAACGAAT AGGTGGAGAA 44583 139 1.33e-04 ATGACTGTGA CTGGCATCGAAGACT CCCATCTTAC 49854 339 1.33e-04 TCACAACACG CAGTCAACTACCAAG ACTTTGATTC 44265 42 2.00e-04 CACTCGTTGA CAGTGAAGGAGGCCG AAACGAACAG 40300 139 2.00e-04 TGGCGTGCTA CTGCAACCAACCATA AATGAGTTCA 49640 106 2.13e-04 TTATATAGCC CCGTCTAAAACTCAG TTTTGCATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 46573 1.1e-08 52_[+3]_433 48438 9e-08 85_[+3]_400 42955 1.3e-06 330_[+3]_155 44890 3.6e-06 71_[+3]_414 46947 7e-06 468_[+3]_17 37053 1e-05 18_[+3]_467 39546 1.3e-05 309_[+3]_176 32129 1.6e-05 46_[+3]_439 45637 1.8e-05 318_[+3]_167 42423 2e-05 455_[+3]_30 47674 3.6e-05 208_[+3]_277 49209 3.9e-05 212_[+3]_273 37052 4.3e-05 161_[+3]_324 54105 4.7e-05 296_[+3]_189 47547 5.2e-05 157_[+3]_328 48697 5.2e-05 327_[+3]_158 48753 8.5e-05 278_[+3]_207 49907 9.2e-05 18_[+3]_467 33763 0.00011 111_[+3]_374 44583 0.00013 138_[+3]_347 49854 0.00013 338_[+3]_147 44265 0.0002 41_[+3]_444 40300 0.0002 138_[+3]_347 49640 0.00021 105_[+3]_380 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=15 seqs=24 46573 ( 53) CTGTCAACAAAACAG 1 48438 ( 86) CTGTAAAAAAAAAAG 1 42955 ( 331) CTGTGAACGAAAACC 1 44890 ( 72) CTGTGAAGGAAAATC 1 46947 ( 469) CTGTTATAAAAAATG 1 37053 ( 19) CCGTCAACGAGGACG 1 39546 ( 310) CTGTCACAAAATATC 1 32129 ( 47) CTGTAGAAGAAAATC 1 45637 ( 319) CTGTCATAAATAATC 1 42423 ( 456) CCGCCACAAAAAACC 1 47674 ( 209) CCTCAAACAAAAAAG 1 49209 ( 213) CTTTGAAAAACAATG 1 37052 ( 162) CCGGAACGAAAAAAG 1 54105 ( 297) CTGCAAACAAATCAA 1 47547 ( 158) CAGTCAATAATAAAG 1 48697 ( 328) CCGCTAACAAAACTA 1 48753 ( 279) CTGTCGAGAATACAA 1 49907 ( 19) CAGTCATCGAAGCAT 1 33763 ( 112) CTGTTGACAACGAAT 1 44583 ( 139) CTGGCATCGAAGACT 1 49854 ( 339) CAGTCAACTACCAAG 1 44265 ( 42) CAGTGAAGGAGGCCG 1 40300 ( 139) CTGCAACCAACCATA 1 49640 ( 106) CCGTCTAAAACTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 11664 bayes= 8.92184 E= 3.5e+003 -1123 215 -1123 -1123 -77 15 -1123 104 -1123 -1123 215 -176 -1123 -11 -131 132 -19 102 -31 -118 155 -1123 -72 -276 123 -44 -1123 -76 23 102 -31 -276 123 -1123 50 -276 181 -1123 -1123 -1123 103 -11 -131 -118 103 -144 1 -118 131 37 -1123 -1123 69 -11 -1123 24 -77 15 115 -118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 24 E= 3.5e+003 0.000000 1.000000 0.000000 0.000000 0.166667 0.250000 0.000000 0.583333 0.000000 0.000000 0.916667 0.083333 0.000000 0.208333 0.083333 0.708333 0.250000 0.458333 0.166667 0.125000 0.833333 0.000000 0.125000 0.041667 0.666667 0.166667 0.000000 0.166667 0.333333 0.458333 0.166667 0.041667 0.666667 0.000000 0.291667 0.041667 1.000000 0.000000 0.000000 0.000000 0.583333 0.208333 0.083333 0.125000 0.583333 0.083333 0.208333 0.125000 0.708333 0.291667 0.000000 0.000000 0.458333 0.208333 0.000000 0.333333 0.166667 0.250000 0.458333 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- C[TC]G[TC][CA]AA[CA][AG]A[AC][AG][AC][ATC][GC] -------------------------------------------------------------------------------- Time 16.05 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 42423 1.24e-03 162_[+1(4.92e-06)]_277_\ [+3(1.97e-05)]_30 42955 1.00e-03 11_[+1(4.66e-05)]_303_\ [+3(1.28e-06)]_155 46573 2.27e-07 52_[+3(1.10e-08)]_51_[+1(3.72e-07)]_\ 366 37052 2.73e-03 9_[+1(1.08e-05)]_136_[+3(4.31e-05)]_\ 324 37053 1.20e-02 18_[+3(1.01e-05)]_467 47674 2.03e-07 167_[+1(2.90e-05)]_25_\ [+3(3.58e-05)]_35_[+2(7.32e-09)]_221 48697 1.27e-08 71_[+2(7.21e-10)]_235_\ [+3(5.15e-05)]_89_[+1(9.85e-06)]_53 48753 7.73e-10 103_[+1(5.43e-05)]_86_\ [+2(2.10e-10)]_8_[+1(1.00e-06)]_28_[+3(8.50e-05)]_169_[+2(8.51e-05)]_17 54105 1.67e-03 296_[+3(4.72e-05)]_28_\ [+1(2.06e-05)]_145 49854 1.52e-03 170_[+1(1.89e-06)]_314 40300 1.94e-02 475_[+1(1.73e-05)]_9 48438 6.85e-08 85_[+3(9.04e-08)]_132_\ [+1(2.86e-08)]_4_[+3(8.50e-05)]_233 32129 2.36e-08 46_[+3(1.59e-05)]_67_[+2(7.21e-10)]_\ 3_[+1(6.31e-05)]_332 44583 4.09e-02 223_[+1(6.79e-05)]_261 49640 3.11e-03 364_[+1(8.10e-06)]_120 45637 1.90e-06 213_[+2(6.08e-09)]_84_\ [+3(1.77e-05)]_167 44890 1.10e-05 71_[+3(3.61e-06)]_177_\ [+1(1.14e-06)]_221 46947 9.70e-06 305_[+1(1.30e-06)]_15_\ [+2(6.15e-05)]_111_[+3(6.99e-06)]_17 49209 8.15e-03 168_[+1(8.44e-05)]_28_\ [+3(3.93e-05)]_273 47547 6.76e-04 33_[+1(8.69e-07)]_108_\ [+3(5.15e-05)]_328 49907 9.14e-03 18_[+3(9.19e-05)]_284_\ [+1(2.25e-05)]_167 39546 9.23e-03 178_[+1(8.44e-05)]_115_\ [+3(1.27e-05)]_176 33763 3.78e-09 256_[+1(8.69e-07)]_110_\ [+2(1.07e-09)]_97 44265 2.63e-02 183_[+1(3.99e-05)]_301 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************