******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/497/497.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 9246 1.0000 500 42861 1.0000 500 36377 1.0000 500 20905 1.0000 500 13313 1.0000 500 36769 1.0000 500 46850 1.0000 500 21441 1.0000 500 14339 1.0000 500 47593 1.0000 500 48524 1.0000 500 15371 1.0000 500 32681 1.0000 500 15683 1.0000 500 23247 1.0000 500 16142 1.0000 500 16499 1.0000 500 7866 1.0000 500 55209 1.0000 500 50512 1.0000 500 50546 1.0000 500 10752 1.0000 500 44831 1.0000 500 45400 1.0000 500 20026 1.0000 500 5217 1.0000 500 35638 1.0000 500 46172 1.0000 500 46415 1.0000 500 48346 1.0000 500 31984 1.0000 500 41510 1.0000 500 35030 1.0000 500 49871 1.0000 500 45785 1.0000 500 33845 1.0000 500 45399 1.0000 500 34531 1.0000 500 34647 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/497/497.seqs.fa -oc motifs/497 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 39 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 19500 N= 39 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.259 C 0.262 G 0.227 T 0.252 Background letter frequencies (from dataset with add-one prior applied): A 0.259 C 0.262 G 0.227 T 0.252 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 16 llr = 217 E-value = 9.4e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :17:1:8:8:21831741821 pos.-specific C :41313:9:::3:23:34131 probability G 1431:831:a:6:413:31:6 matrix T 9::69:::3:81215:32152 bits 2.1 * 1.9 * 1.7 * * * 1.5 * * * Relative 1.3 * **** ** * Entropy 1.1 * ******* * * (19.5 bits) 0.9 * * ******* * * * 0.6 *********** * * * * 0.4 ************* *** *** 0.2 ********************* 0.0 --------------------- Multilevel TCATTGACAGTGAGTAACATG consensus GGC CG T C ACGTG C sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 46172 380 5.51e-09 TTTCAACACG TCATTGACAGTGAGCACTACT TCTGTTTTGC 32681 431 7.23e-09 GTATTTCGAT TGACTGACTGTGAATATCATC GGCTTGACGC 42861 294 9.41e-09 AAGTATAGTT TGATTGACAGTGACTGTGAAT TGGCAATGCA 46850 254 1.56e-08 GAAGAATGAC TCATAGACAGTGAGCACGACG CAATAAACCA 55209 221 3.56e-08 TTTCTCGCCG TCACTGACTGTGAGTAACGTC TCCATATCGA 48524 100 5.52e-08 AGTCTTTTTC TCGTTGGCAGTGAGTGACTCG GTTTGACAAT 35638 108 9.29e-08 AAGATAATGG TGGTTGACAGATACTGCCATG CAGCAACGAA 16499 72 1.03e-07 CTGCAGATAT TGACTGACTGACTATATCATG TGGACGACAA 34647 240 3.75e-07 CTGCTTGTGT TGACTCACAGACAGTAATAAT ATTGTATTAC 50546 227 3.75e-07 GTCTACCCAC TCACTGACAGTAAACAATCTG CCTGGCTAGC 50512 239 5.24e-07 CATCATTGAG TGAGTCACAGTGAAGAAAGTG ATGAGAGTCT 45400 162 8.42e-07 TCGAACATTG TAATTCACAGTCACAGACAAG GGCAATGGCT 20026 60 9.79e-07 TCCCTTATTT TGGTTGGCAGTTTTGATGACG GCTATCTTCT 13313 393 9.79e-07 CTACGGAGAA TCCTTGGGAGTCAACATGATG CGCAATACCC 15683 63 2.43e-06 TTTTCACTGT TAAGTCACTGTGTGTGACATA TCATTTGCCC 5217 478 3.99e-06 CTGGCCGAAA GCGTCGGCAGTGATCACGACG CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 46172 5.5e-09 379_[+1]_100 32681 7.2e-09 430_[+1]_49 42861 9.4e-09 293_[+1]_186 46850 1.6e-08 253_[+1]_226 55209 3.6e-08 220_[+1]_259 48524 5.5e-08 99_[+1]_380 35638 9.3e-08 107_[+1]_372 16499 1e-07 71_[+1]_408 34647 3.7e-07 239_[+1]_240 50546 3.7e-07 226_[+1]_253 50512 5.2e-07 238_[+1]_241 45400 8.4e-07 161_[+1]_318 20026 9.8e-07 59_[+1]_420 13313 9.8e-07 392_[+1]_87 15683 2.4e-06 62_[+1]_417 5217 4e-06 477_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=16 46172 ( 380) TCATTGACAGTGAGCACTACT 1 32681 ( 431) TGACTGACTGTGAATATCATC 1 42861 ( 294) TGATTGACAGTGACTGTGAAT 1 46850 ( 254) TCATAGACAGTGAGCACGACG 1 55209 ( 221) TCACTGACTGTGAGTAACGTC 1 48524 ( 100) TCGTTGGCAGTGAGTGACTCG 1 35638 ( 108) TGGTTGACAGATACTGCCATG 1 16499 ( 72) TGACTGACTGACTATATCATG 1 34647 ( 240) TGACTCACAGACAGTAATAAT 1 50546 ( 227) TCACTGACAGTAAACAATCTG 1 50512 ( 239) TGAGTCACAGTGAAGAAAGTG 1 45400 ( 162) TAATTCACAGTCACAGACAAG 1 20026 ( 60) TGGTTGGCAGTTTTGATGACG 1 13313 ( 393) TCCTTGGGAGTCAACATGATG 1 15683 ( 63) TAAGTCACTGTGTGTGACATA 1 5217 ( 478) GCGTCGGCAGTGATCACGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 18720 bayes= 10.9285 E= 9.4e-004 -1064 -1064 -186 190 -105 74 94 -1064 141 -206 14 -1064 -1064 25 -86 116 -205 -206 -1064 180 -1064 -7 172 -1064 153 -1064 14 -1064 -1064 184 -186 -1064 153 -1064 -1064 -1 -1064 -1064 214 -1064 -46 -1064 -1064 169 -205 -7 131 -101 165 -1064 -1064 -43 27 -48 72 -101 -205 25 -86 99 141 -1064 46 -1064 76 -7 -1064 31 -205 74 46 -43 153 -206 -86 -201 -46 25 -1064 99 -205 -107 146 -43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 16 E= 9.4e-004 0.000000 0.000000 0.062500 0.937500 0.125000 0.437500 0.437500 0.000000 0.687500 0.062500 0.250000 0.000000 0.000000 0.312500 0.125000 0.562500 0.062500 0.062500 0.000000 0.875000 0.000000 0.250000 0.750000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.937500 0.062500 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.187500 0.000000 0.000000 0.812500 0.062500 0.250000 0.562500 0.125000 0.812500 0.000000 0.000000 0.187500 0.312500 0.187500 0.375000 0.125000 0.062500 0.312500 0.125000 0.500000 0.687500 0.000000 0.312500 0.000000 0.437500 0.250000 0.000000 0.312500 0.062500 0.437500 0.312500 0.187500 0.750000 0.062500 0.125000 0.062500 0.187500 0.312500 0.000000 0.500000 0.062500 0.125000 0.625000 0.187500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- T[CG][AG][TC]T[GC][AG]C[AT]GT[GC]A[GA][TC][AG][ATC][CG]A[TC]G -------------------------------------------------------------------------------- Time 12.76 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 16 sites = 13 llr = 171 E-value = 2.9e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 7:2::2:aa558::aa pos.-specific C :::1133::24::3:: probability G 2242537:::2::7:: matrix T 185752:::3:2a::: bits 2.1 1.9 ** * ** 1.7 ** * ** 1.5 * ** * ** Relative 1.3 * *** ***** Entropy 1.1 * *** ***** (18.9 bits) 0.9 ** * *** ***** 0.6 ***** *** ***** 0.4 ***** ********** 0.2 ***** ********** 0.0 ---------------- Multilevel ATTTGCGAAAAATGAA consensus G GGTGC TC C sequence A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 45785 36 2.09e-09 TCTTTTTCCG ATGTTCGAAAAATGAA TCGAAATTAT 33845 283 3.20e-08 TTGCACGGGA ATGTTCGAAAGATGAA ACTGTCTCGA 5217 94 3.71e-08 CGACAAGCGT GTTTGAGAAAAATGAA CATGCCGCCG 31984 140 1.54e-07 TTCATATTTA ATGTTAGAATCATCAA ATGAAGCTGC 34531 311 2.12e-07 CATGAAACTC ATTTGTCAACAATGAA TGGGGGCACC 20026 215 2.89e-07 ATGTACCACT ATTGGGCAACAATGAA ACACAAGACA 36377 45 4.86e-07 CCGACATGCC ATTTGTGAATGATCAA AAAACGAAAA 46172 70 6.78e-07 AAAGATACGA TTTGTGGAAACATGAA CACGATGCTT 15683 111 6.78e-07 TGTCACACTT ATGTGCCAATCTTGAA ATACCGTATC 14339 295 1.63e-06 AGGATCACGT AGTCGGGAATCATGAA ACGCCCGACC 7866 43 1.85e-06 AAGGTCTTCA GTGTCCGAACAATCAA CGATCCCAAT 23247 15 2.20e-06 AAGCAAAATC GGATTGGAAACATCAA CAGTTAACCT 50512 274 2.72e-06 GAGTCTCTAC ATAGTACAAAATTGAA GCGGAACGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 45785 2.1e-09 35_[+2]_449 33845 3.2e-08 282_[+2]_202 5217 3.7e-08 93_[+2]_391 31984 1.5e-07 139_[+2]_345 34531 2.1e-07 310_[+2]_174 20026 2.9e-07 214_[+2]_270 36377 4.9e-07 44_[+2]_440 46172 6.8e-07 69_[+2]_415 15683 6.8e-07 110_[+2]_374 14339 1.6e-06 294_[+2]_190 7866 1.8e-06 42_[+2]_442 23247 2.2e-06 14_[+2]_470 50512 2.7e-06 273_[+2]_211 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=16 seqs=13 45785 ( 36) ATGTTCGAAAAATGAA 1 33845 ( 283) ATGTTCGAAAGATGAA 1 5217 ( 94) GTTTGAGAAAAATGAA 1 31984 ( 140) ATGTTAGAATCATCAA 1 34531 ( 311) ATTTGTCAACAATGAA 1 20026 ( 215) ATTGGGCAACAATGAA 1 36377 ( 45) ATTTGTGAATGATCAA 1 46172 ( 70) TTTGTGGAAACATGAA 1 15683 ( 111) ATGTGCCAATCTTGAA 1 14339 ( 295) AGTCGGGAATCATGAA 1 7866 ( 43) GTGTCCGAACAATCAA 1 23247 ( 15) GGATTGGAAACATCAA 1 50512 ( 274) ATAGTACAAAATTGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 18915 bayes= 11.0366 E= 2.9e-002 142 -1035 2 -171 -1035 -1035 -56 175 -75 -1035 76 87 -1035 -177 2 146 -1035 -177 102 87 -17 23 44 -71 -1035 23 161 -1035 195 -1035 -1035 -1035 195 -1035 -1035 -1035 83 -18 -1035 29 83 55 -56 -1035 171 -1035 -1035 -71 -1035 -1035 -1035 199 -1035 23 161 -1035 195 -1035 -1035 -1035 195 -1035 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 13 E= 2.9e-002 0.692308 0.000000 0.230769 0.076923 0.000000 0.000000 0.153846 0.846154 0.153846 0.000000 0.384615 0.461538 0.000000 0.076923 0.230769 0.692308 0.000000 0.076923 0.461538 0.461538 0.230769 0.307692 0.307692 0.153846 0.000000 0.307692 0.692308 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.461538 0.230769 0.000000 0.307692 0.461538 0.384615 0.153846 0.000000 0.846154 0.000000 0.000000 0.153846 0.000000 0.000000 0.000000 1.000000 0.000000 0.307692 0.692308 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [AG]T[TG][TG][GT][CGA][GC]AA[ATC][AC]AT[GC]AA -------------------------------------------------------------------------------- Time 25.29 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 12 sites = 25 llr = 234 E-value = 3.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A ::1:::::3::: pos.-specific C 4:1::::5:741 probability G 2a:2:412:145 matrix T 5:88a6937224 bits 2.1 * 1.9 * * 1.7 * * 1.5 * * * Relative 1.3 **** * Entropy 1.1 ****** * (13.5 bits) 0.9 ****** ** 0.6 ****** **** 0.4 ************ 0.2 ************ 0.0 ------------ Multilevel TGTTTTTCTCCG consensus C G TATGT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 34531 108 1.12e-07 CGTGGAATTA TGTTTTTCTCGG CAGCAAAGAA 45399 456 4.52e-07 AAGTCGACCG CGTTTTTCTCGG AATCGCAACG 41510 301 2.92e-06 GTGGGTGGAT TGTTTTTCTTCG TCGTAGGACG 31984 291 2.92e-06 TCCACTTTCC TGTTTTTCACGT CCCGCACGAC 9246 223 3.80e-06 TTGCAGAAAA CGTTTTTCTCTG GAATGACAGC 14339 249 4.30e-06 CACGGGACTT GGTTTGTCTCCT CTGCTGCGTA 50546 172 7.78e-06 TCTACCGATC TGTTTGTTACCT TGCTTTCTCC 36377 356 7.78e-06 TCGGGAATGA CGTGTTTCTCGG CCTGCTTTGA 15683 161 8.77e-06 TAGGATTTCA GGTTTGTTTCCT CAGCACTGAC 15371 443 1.34e-05 GCTCGTGCCC CGTTTTTTTTGT ACAGGCCAAA 7866 480 1.80e-05 AATCGATTTA CGTTTGTCATCG AAAAAAGGT 20026 174 2.42e-05 GTCACCACCA GGTTTGTTACGT TCGATTGGTT 16142 129 2.42e-05 CGTTTCTCAC TGTTTTTCTCTC ACCGTCCAGC 23247 389 2.42e-05 CGACGTGTGT TGTTTGTGTGCG ATCGTGTTCG 50512 484 2.91e-05 CACTCGGCAC CGTTTGTCTCGA CCGCA 10752 90 3.16e-05 AGCCTCATGC TGATTTTTTCCT CTCACTTGTC 48346 48 3.45e-05 CCGAACTAGT CGATTTTTTCCG TAGAAGCGAT 20905 467 3.45e-05 CACGTAAGCG TGTTTTGGTCCT GTGCACCGGT 35030 192 3.72e-05 TCCGAACAAT GGTTTTTCATGT CGTATTGCGA 13313 432 4.78e-05 CCTCACAAGA TGTTTGGCTTCG GCTACTCTAT 48524 147 5.13e-05 GCGAACGCGG TGTTTGTGACCC CCGTCAGCGT 46850 469 7.25e-05 CAGAAGTTTT TGCTTTTTTCTT TCTCGAAAAG 34647 279 7.78e-05 ACAGTTTGTC CGCGTTTCTCGG TTGGCTACTA 55209 178 8.28e-05 ACTCTGTGTG TGTGTGTGACTG TCCCTTGTCG 45785 99 1.13e-04 TGTGGTTGCG CGTGTGTGTGGG GGGGGGGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 34531 1.1e-07 107_[+3]_381 45399 4.5e-07 455_[+3]_33 41510 2.9e-06 300_[+3]_188 31984 2.9e-06 290_[+3]_198 9246 3.8e-06 222_[+3]_266 14339 4.3e-06 248_[+3]_240 50546 7.8e-06 171_[+3]_317 36377 7.8e-06 355_[+3]_133 15683 8.8e-06 160_[+3]_328 15371 1.3e-05 442_[+3]_46 7866 1.8e-05 479_[+3]_9 20026 2.4e-05 173_[+3]_315 16142 2.4e-05 128_[+3]_360 23247 2.4e-05 388_[+3]_100 50512 2.9e-05 483_[+3]_5 10752 3.2e-05 89_[+3]_399 48346 3.5e-05 47_[+3]_441 20905 3.5e-05 466_[+3]_22 35030 3.7e-05 191_[+3]_297 13313 4.8e-05 431_[+3]_57 48524 5.1e-05 146_[+3]_342 46850 7.3e-05 468_[+3]_20 34647 7.8e-05 278_[+3]_210 55209 8.3e-05 177_[+3]_311 45785 0.00011 98_[+3]_390 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=12 seqs=25 34531 ( 108) TGTTTTTCTCGG 1 45399 ( 456) CGTTTTTCTCGG 1 41510 ( 301) TGTTTTTCTTCG 1 31984 ( 291) TGTTTTTCACGT 1 9246 ( 223) CGTTTTTCTCTG 1 14339 ( 249) GGTTTGTCTCCT 1 50546 ( 172) TGTTTGTTACCT 1 36377 ( 356) CGTGTTTCTCGG 1 15683 ( 161) GGTTTGTTTCCT 1 15371 ( 443) CGTTTTTTTTGT 1 7866 ( 480) CGTTTGTCATCG 1 20026 ( 174) GGTTTGTTACGT 1 16142 ( 129) TGTTTTTCTCTC 1 23247 ( 389) TGTTTGTGTGCG 1 50512 ( 484) CGTTTGTCTCGA 1 10752 ( 90) TGATTTTTTCCT 1 48346 ( 48) CGATTTTTTCCG 1 20905 ( 467) TGTTTTGGTCCT 1 35030 ( 192) GGTTTTTCATGT 1 13313 ( 432) TGTTTGGCTTCG 1 48524 ( 147) TGTTTGTGACCC 1 46850 ( 469) TGCTTTTTTCTT 1 34647 ( 279) CGCGTTTCTCGG 1 55209 ( 178) TGTGTGTGACTG 1 45785 ( 99) CGTGTGTGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 19071 bayes= 10.7073 E= 3.7e+000 -1129 46 -51 93 -1129 -1129 214 -1129 -169 -171 -1129 174 -1129 -1129 -51 174 -1129 -1129 -1129 199 -1129 -1129 95 115 -1129 -1129 -151 187 -1129 99 -19 15 11 -1129 -1129 152 -1129 146 -151 -33 -1129 75 81 -65 -269 -171 108 67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 25 E= 3.7e+000 0.000000 0.360000 0.160000 0.480000 0.000000 0.000000 1.000000 0.000000 0.080000 0.080000 0.000000 0.840000 0.000000 0.000000 0.160000 0.840000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.440000 0.560000 0.000000 0.000000 0.080000 0.920000 0.000000 0.520000 0.200000 0.280000 0.280000 0.000000 0.000000 0.720000 0.000000 0.720000 0.080000 0.200000 0.000000 0.440000 0.400000 0.160000 0.040000 0.080000 0.480000 0.400000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [TC]GTTT[TG]T[CTG][TA][CT][CG][GT] -------------------------------------------------------------------------------- Time 37.90 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 9246 3.81e-02 114_[+3(9.43e-05)]_96_\ [+3(3.80e-06)]_266 42861 2.17e-05 293_[+1(9.41e-09)]_39_\ [+1(6.37e-05)]_126 36377 1.85e-05 44_[+2(4.86e-07)]_295_\ [+3(7.78e-06)]_133 20905 1.21e-01 466_[+3(3.45e-05)]_22 13313 7.59e-04 115_[+1(2.34e-05)]_256_\ [+1(9.79e-07)]_18_[+3(4.78e-05)]_57 36769 8.61e-02 500 46850 2.95e-05 253_[+1(1.56e-08)]_194_\ [+3(7.25e-05)]_20 21441 2.92e-01 500 14339 1.24e-04 248_[+3(4.30e-06)]_34_\ [+2(1.63e-06)]_190 47593 5.99e-01 500 48524 7.10e-06 99_[+1(5.52e-08)]_26_[+3(5.13e-05)]_\ 342 15371 1.79e-02 442_[+3(1.34e-05)]_46 32681 4.55e-05 284_[+1(4.82e-07)]_125_\ [+1(7.23e-09)]_49 15683 3.70e-07 62_[+1(2.43e-06)]_27_[+2(6.78e-07)]_\ 34_[+3(8.77e-06)]_328 23247 9.39e-04 14_[+2(2.20e-06)]_358_\ [+3(2.42e-05)]_100 16142 1.99e-02 62_[+3(3.45e-05)]_54_[+3(2.42e-05)]_\ 360 16499 2.33e-03 71_[+1(1.03e-07)]_408 7866 1.94e-04 42_[+2(1.85e-06)]_421_\ [+3(1.80e-05)]_9 55209 5.97e-05 177_[+3(8.28e-05)]_31_\ [+1(3.56e-08)]_259 50512 9.55e-07 238_[+1(5.24e-07)]_14_\ [+2(2.72e-06)]_177_[+3(5.53e-05)]_5_[+3(2.91e-05)]_5 50546 4.02e-05 171_[+3(7.78e-06)]_43_\ [+1(3.75e-07)]_253 10752 6.43e-02 89_[+3(3.16e-05)]_399 44831 4.38e-01 500 45400 4.41e-03 161_[+1(8.42e-07)]_318 20026 1.88e-07 59_[+1(9.79e-07)]_93_[+3(2.42e-05)]_\ 29_[+2(2.89e-07)]_145_[+3(4.42e-05)]_113 5217 2.82e-06 93_[+2(3.71e-08)]_368_\ [+1(3.99e-06)]_2 35638 5.35e-04 60_[+1(4.26e-05)]_26_[+1(9.29e-08)]_\ 372 46172 1.35e-07 69_[+2(6.78e-07)]_294_\ [+1(5.51e-09)]_100 46415 6.50e-01 500 48346 4.45e-02 47_[+3(3.45e-05)]_441 31984 8.30e-06 139_[+2(1.54e-07)]_17_\ [+2(3.18e-05)]_102_[+3(2.92e-06)]_198 41510 3.33e-03 300_[+3(2.92e-06)]_188 35030 3.47e-02 191_[+3(3.72e-05)]_297 49871 4.87e-01 500 45785 5.55e-06 35_[+2(2.09e-09)]_449 33845 1.81e-04 282_[+2(3.20e-08)]_202 45399 6.60e-03 455_[+3(4.52e-07)]_33 34531 1.06e-06 107_[+3(1.12e-07)]_191_\ [+2(2.12e-07)]_174 34647 3.84e-04 239_[+1(3.75e-07)]_18_\ [+3(7.78e-05)]_210 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************