******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/1/1.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10143 1.0000 500 11247 1.0000 500 20784 1.0000 500 21059 1.0000 500 21692 1.0000 500 22413 1.0000 500 24935 1.0000 500 25560 1.0000 500 25840 1.0000 500 260868 1.0000 500 270328 1.0000 500 28125 1.0000 500 40323 1.0000 500 5216 1.0000 500 6155 1.0000 500 6164 1.0000 500 6252 1.0000 500 7936 1.0000 500 814 1.0000 500 8329 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/1/1.seqs.fa -oc motifs/1 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 20 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 10000 N= 20 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.270 C 0.234 G 0.228 T 0.269 Background letter frequencies (from dataset with add-one prior applied): A 0.269 C 0.234 G 0.228 T 0.269 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 12 sites = 18 llr = 172 E-value = 3.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 2:2::74:2::8 pos.-specific C 22:::33:1:11 probability G 18:19:1a:49: matrix T 5:891:2:76:1 bits 2.1 * 1.9 * * 1.7 * * * 1.5 ** * * Relative 1.3 **** * * Entropy 1.1 ***** * ** (13.8 bits) 0.9 ***** ***** 0.6 ***** ***** 0.4 ***** ***** 0.2 ****** ***** 0.0 ------------ Multilevel TGTTGAAGTTGA consensus AC CC AG sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 11247 214 7.41e-08 TTAGTTCCTA TGTTGAAGTTGA ATGATCGGAC 10143 144 2.01e-07 AGTCTCAGTG TGTTGACGTTGA CTGTCGCCAT 40323 341 1.99e-06 TTGTTGGCGC TGTTGCTGTTGA GGCCCATGTT 25560 328 4.31e-06 CAATGGTTCA ACTTGAAGTTGA CATCGAGCTG 20784 292 4.31e-06 TTGCCCACGC TGTTGACGTTGC CACTCCATCG 7936 20 7.72e-06 GGCCGGAGGT TCTTGAAGATGA TTTGATAACT 28125 1 9.17e-06 . CGTTGCGGTGGA TTCTCTCGAG 270328 156 9.17e-06 GACGCTCTCA CGTTGCGGTGGA TTCTCTCGAG 6164 289 1.99e-05 CTAGTTCAAG AGTGGATGTGGA AACACGTACG 260868 375 1.99e-05 TGAATCTTCG TCTTGACGTTGT CAATAGTATC 25840 49 1.99e-05 TCCAGTTCGG TGTTGACGAGGC TTTGATTTGT 5216 190 2.36e-05 AGACGATTGA CGATGAAGAGGA GGTTTTACCC 21692 237 2.36e-05 GGAAGCGCCA AGTTGAAGTTCA GTTGCTTCCA 24935 180 2.54e-05 TCACTGAGAA TCTTGAAGCTGA CGTCACGTTT 814 259 4.11e-05 GCAAGGAATG TGATGATGTGGT GGATTTGCTT 21059 47 5.07e-05 TGACGGATGA GGATGCAGTTGA AACGCCTCTA 8329 91 6.62e-05 TTTATCATGG CGTTTATGAGGA AGGAGAATAC 22413 286 1.55e-04 TTCAGGAGAA AGTGTCCGTGGA AATCTTCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 11247 7.4e-08 213_[+1]_275 10143 2e-07 143_[+1]_345 40323 2e-06 340_[+1]_148 25560 4.3e-06 327_[+1]_161 20784 4.3e-06 291_[+1]_197 7936 7.7e-06 19_[+1]_469 28125 9.2e-06 [+1]_488 270328 9.2e-06 155_[+1]_333 6164 2e-05 288_[+1]_200 260868 2e-05 374_[+1]_114 25840 2e-05 48_[+1]_440 5216 2.4e-05 189_[+1]_299 21692 2.4e-05 236_[+1]_252 24935 2.5e-05 179_[+1]_309 814 4.1e-05 258_[+1]_230 21059 5.1e-05 46_[+1]_442 8329 6.6e-05 90_[+1]_398 22413 0.00015 285_[+1]_203 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=12 seqs=18 11247 ( 214) TGTTGAAGTTGA 1 10143 ( 144) TGTTGACGTTGA 1 40323 ( 341) TGTTGCTGTTGA 1 25560 ( 328) ACTTGAAGTTGA 1 20784 ( 292) TGTTGACGTTGC 1 7936 ( 20) TCTTGAAGATGA 1 28125 ( 1) CGTTGCGGTGGA 1 270328 ( 156) CGTTGCGGTGGA 1 6164 ( 289) AGTGGATGTGGA 1 260868 ( 375) TCTTGACGTTGT 1 25840 ( 49) TGTTGACGAGGC 1 5216 ( 190) CGATGAAGAGGA 1 21692 ( 237) AGTTGAAGTTCA 1 24935 ( 180) TCTTGAAGCTGA 1 814 ( 259) TGATGATGTGGT 1 21059 ( 47) GGATGCAGTTGA 1 8329 ( 91) CGTTTATGAGGA 1 22413 ( 286) AGTGTCCGTGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 9780 bayes= 9.21757 E= 3.3e-003 -28 -7 -204 90 -1081 -7 177 -1081 -69 -1081 -1081 163 -1081 -1081 -104 173 -1081 -1081 196 -127 142 25 -1081 -1081 53 25 -104 -27 -1081 -1081 213 -1081 -28 -207 -1081 143 -1081 -1081 96 105 -1081 -207 205 -1081 153 -107 -1081 -127 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 18 E= 3.3e-003 0.222222 0.222222 0.055556 0.500000 0.000000 0.222222 0.777778 0.000000 0.166667 0.000000 0.000000 0.833333 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.888889 0.111111 0.722222 0.277778 0.000000 0.000000 0.388889 0.277778 0.111111 0.222222 0.000000 0.000000 1.000000 0.000000 0.222222 0.055556 0.000000 0.722222 0.000000 0.000000 0.444444 0.555556 0.000000 0.055556 0.944444 0.000000 0.777778 0.111111 0.000000 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [TAC][GC]TTG[AC][ACT]G[TA][TG]GA -------------------------------------------------------------------------------- Time 3.69 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 18 llr = 209 E-value = 5.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A ::643:186186154172231 pos.-specific C 3636266:192:721917337 probability G :31:2:::1::1:13:2::21 matrix T 72::34423::4232::1421 bits 2.1 1.9 1.7 * 1.5 * * Relative 1.3 * ** * Entropy 1.1 * * * * ** * * * (16.7 bits) 0.9 * ** *** ** * *** * 0.6 **** *** **** *** * 0.4 **** ******** **** * 0.2 **** ********* **** * 0.0 --------------------- Multilevel TCACTCCAACAACAACACTAC consensus CGCAATT T TTTG ACC sequence C T AT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 814 435 1.41e-08 ACCGCACGTC TTACTCTAACATCAGCACCGC ATCGCATCTC 28125 245 2.60e-08 CATTCTCGTG TCACTTTATCAACAACGCAAC AACAACTCAT 270328 400 2.60e-08 CATTCTCGTG TCACTTTATCAACAACGCAAC AACAACTCAT 25560 468 6.04e-08 ATCGGGTCAA TGACTCTAACAACCACCCTCC TCACACCTTA 22413 457 2.37e-07 AGCACTTCAT TCCCCTCAACAACATCAATAT CAATCAACCT 24935 28 6.27e-07 TCGACGGCCT TGCACTAAACAACAGCACAAC AAACTTCACT 8329 455 6.94e-07 CCCCTCCTCC TCAACCCACCATCATAACTTC TCACTGTGTT 25840 415 1.24e-06 CAGAAGTTGC TCACGTCATCATTTACACTCG CTCAGTTCAC 11247 478 1.80e-06 TCGTTGCTCG TTACACCAACAACAACATTGA AC 7936 476 2.34e-06 CCCTTAAGCT TCACTCTACCCATTCCACCTC ATCC 6164 189 2.55e-06 CTCTCCTCCA CCAAATCTTCATCCACAACCC TCTGCGGCAG 40323 47 3.02e-06 AACGTAGAGT TGGATCCAACATTTGCAATAC TCTTTAAACT 21059 316 4.89e-06 CACTATGTGA TCCCACTAACAAAGGCGCTTC TGGAGGAAGC 6155 480 5.71e-06 AGGAACCCAA CCAAGCCAACAGCACCACACA 10143 382 8.25e-06 GGAAGACAGA CGACCCTTGCATCAACAACGC ACAAGTGCCT 260868 475 8.87e-06 GAATCAAAGA TGCAATCAACCATCGAACTAC TCACG 21692 267 1.43e-05 CACCTCACAC CTCAATCTTCCACTTCACCTC GAGCTGCCGA 20784 372 2.97e-05 TCTGCCCCCT CCCCGCCAAAATCTTCCCCCT CCTTCAACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 814 1.4e-08 434_[+2]_45 28125 2.6e-08 244_[+2]_235 270328 2.6e-08 399_[+2]_80 25560 6e-08 467_[+2]_12 22413 2.4e-07 456_[+2]_23 24935 6.3e-07 27_[+2]_452 8329 6.9e-07 454_[+2]_25 25840 1.2e-06 414_[+2]_65 11247 1.8e-06 477_[+2]_2 7936 2.3e-06 475_[+2]_4 6164 2.5e-06 188_[+2]_291 40323 3e-06 46_[+2]_433 21059 4.9e-06 315_[+2]_164 6155 5.7e-06 479_[+2] 10143 8.3e-06 381_[+2]_98 260868 8.9e-06 474_[+2]_5 21692 1.4e-05 266_[+2]_213 20784 3e-05 371_[+2]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=18 814 ( 435) TTACTCTAACATCAGCACCGC 1 28125 ( 245) TCACTTTATCAACAACGCAAC 1 270328 ( 400) TCACTTTATCAACAACGCAAC 1 25560 ( 468) TGACTCTAACAACCACCCTCC 1 22413 ( 457) TCCCCTCAACAACATCAATAT 1 24935 ( 28) TGCACTAAACAACAGCACAAC 1 8329 ( 455) TCAACCCACCATCATAACTTC 1 25840 ( 415) TCACGTCATCATTTACACTCG 1 11247 ( 478) TTACACCAACAACAACATTGA 1 7936 ( 476) TCACTCTACCCATTCCACCTC 1 6164 ( 189) CCAAATCTTCATCCACAACCC 1 40323 ( 47) TGGATCCAACATTTGCAATAC 1 21059 ( 316) TCCCACTAACAAAGGCGCTTC 1 6155 ( 480) CCAAGCCAACAGCACCACACA 1 10143 ( 382) CGACCCTTGCATCAACAACGC 1 260868 ( 475) TGCAATCAACCATCGAACTAC 1 21692 ( 267) CTCAATCTTCCACTTCACCTC 1 20784 ( 372) CCCCGCCAAAATCTTCCCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 9600 bayes= 9.19073 E= 5.2e-002 -1081 25 -1081 143 -1081 125 28 -69 118 51 -204 -1081 53 139 -1081 -1081 4 -7 -45 31 -1081 125 -1081 73 -228 125 -1081 53 163 -1081 -1081 -69 104 -107 -204 5 -228 202 -1081 -1081 163 -49 -1081 -1081 104 -1081 -204 53 -228 163 -1081 -27 89 -49 -204 5 53 -107 28 -27 -128 193 -1081 -1081 142 -107 -45 -1081 -28 163 -1081 -227 -28 51 -1081 73 31 25 -45 -27 -128 163 -204 -127 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 18 E= 5.2e-002 0.000000 0.277778 0.000000 0.722222 0.000000 0.555556 0.277778 0.166667 0.611111 0.333333 0.055556 0.000000 0.388889 0.611111 0.000000 0.000000 0.277778 0.222222 0.166667 0.333333 0.000000 0.555556 0.000000 0.444444 0.055556 0.555556 0.000000 0.388889 0.833333 0.000000 0.000000 0.166667 0.555556 0.111111 0.055556 0.277778 0.055556 0.944444 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.555556 0.000000 0.055556 0.388889 0.055556 0.722222 0.000000 0.222222 0.500000 0.166667 0.055556 0.277778 0.388889 0.111111 0.277778 0.222222 0.111111 0.888889 0.000000 0.000000 0.722222 0.111111 0.166667 0.000000 0.222222 0.722222 0.000000 0.055556 0.222222 0.333333 0.000000 0.444444 0.333333 0.277778 0.166667 0.222222 0.111111 0.722222 0.055556 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [TC][CG][AC][CA][TAC][CT][CT]A[AT]CA[AT][CT][AT][AGT]CA[CA][TCA][ACT]C -------------------------------------------------------------------------------- Time 7.31 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 19 sites = 5 llr = 97 E-value = 2.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 2a:4::6:::668:::a:: pos.-specific C ::2:a22::824:8::::: probability G ::8::8:2:2::22:a:a: matrix T 8::6::28a:2:::a:::a bits 2.1 * * * 1.9 * * * ***** 1.7 * * * ***** 1.5 ** ** * ***** Relative 1.3 *** ** *** ******* Entropy 1.1 *** ** *** ******** (28.1 bits) 0.9 ****** *** ******** 0.6 ******************* 0.4 ******************* 0.2 ******************* 0.0 ------------------- Multilevel TAGTCGATTCAAACTGAGT consensus A CA CCG GCCGG sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------- 28125 290 4.97e-12 CAAAGACATA TAGTCGATTCAAACTGAGT AATCAATTCA 270328 445 4.97e-12 CAAAGACATA TAGTCGATTCAAACTGAGT AATCAATTCA 10143 17 2.56e-09 GAGCTACTTG TAGTCCATTCTCAGTGAGT GGCGAATCAC 6252 375 3.04e-09 AGCCAGCCCC AAGACGTTTCACGCTGAGT AGGAATGCTG 5216 337 8.27e-09 TGTTGGACTG TACACGCGTGCAACTGAGT TATCAGAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 28125 5e-12 289_[+3]_192 270328 5e-12 444_[+3]_37 10143 2.6e-09 16_[+3]_465 6252 3e-09 374_[+3]_107 5216 8.3e-09 336_[+3]_145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=19 seqs=5 28125 ( 290) TAGTCGATTCAAACTGAGT 1 270328 ( 445) TAGTCGATTCAAACTGAGT 1 10143 ( 17) TAGTCCATTCTCAGTGAGT 1 6252 ( 375) AAGACGTTTCACGCTGAGT 1 5216 ( 337) TACACGCGTGCAACTGAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 9640 bayes= 11.1638 E= 2.0e+000 -43 -897 -897 157 189 -897 -897 -897 -897 -22 181 -897 57 -897 -897 116 -897 210 -897 -897 -897 -22 181 -897 115 -22 -897 -42 -897 -897 -19 157 -897 -897 -897 189 -897 177 -19 -897 115 -22 -897 -42 115 78 -897 -897 157 -897 -19 -897 -897 177 -19 -897 -897 -897 -897 189 -897 -897 213 -897 189 -897 -897 -897 -897 -897 213 -897 -897 -897 -897 189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 5 E= 2.0e+000 0.200000 0.000000 0.000000 0.800000 1.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.400000 0.000000 0.000000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.600000 0.200000 0.000000 0.200000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.800000 0.200000 0.000000 0.600000 0.200000 0.000000 0.200000 0.600000 0.400000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [TA]A[GC][TA]C[GC][ACT][TG]T[CG][ACT][AC][AG][CG]TGAGT -------------------------------------------------------------------------------- Time 10.78 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10143 2.07e-10 16_[+3(2.56e-09)]_108_\ [+1(2.01e-07)]_226_[+2(8.25e-06)]_98 11247 2.61e-06 213_[+1(7.41e-08)]_224_\ [+2(5.63e-05)]_7_[+2(1.80e-06)]_2 20784 1.80e-03 156_[+1(2.18e-05)]_123_\ [+1(4.31e-06)]_68_[+2(2.97e-05)]_108 21059 1.38e-03 46_[+1(5.07e-05)]_257_\ [+2(4.89e-06)]_164 21692 3.19e-03 236_[+1(2.36e-05)]_18_\ [+2(1.43e-05)]_213 22413 5.80e-04 456_[+2(2.37e-07)]_23 24935 1.92e-04 27_[+2(6.27e-07)]_32_[+2(1.85e-05)]_\ 78_[+1(2.54e-05)]_212_[+2(1.25e-05)]_76 25560 9.16e-06 327_[+1(4.31e-06)]_128_\ [+2(6.04e-08)]_12 25840 3.65e-04 48_[+1(1.99e-05)]_354_\ [+2(1.24e-06)]_65 260868 4.36e-04 374_[+1(1.99e-05)]_88_\ [+2(8.87e-06)]_5 270328 9.43e-14 155_[+1(9.17e-06)]_232_\ [+2(2.60e-08)]_24_[+3(4.97e-12)]_2_[+2(8.99e-05)]_14 28125 9.43e-14 [+1(9.17e-06)]_232_[+2(2.60e-08)]_\ 24_[+3(4.97e-12)]_2_[+2(8.99e-05)]_14_[+2(6.63e-06)]_134 40323 1.25e-04 46_[+2(3.02e-06)]_273_\ [+1(1.99e-06)]_148 5216 5.19e-06 189_[+1(2.36e-05)]_135_\ [+3(8.27e-09)]_145 6155 3.73e-02 479_[+2(5.71e-06)] 6164 1.97e-04 188_[+2(2.55e-06)]_79_\ [+1(1.99e-05)]_200 6252 1.19e-04 374_[+3(3.04e-09)]_107 7936 1.18e-04 19_[+1(7.72e-06)]_444_\ [+2(2.34e-06)]_4 814 1.87e-05 258_[+1(4.11e-05)]_164_\ [+2(1.41e-08)]_18_[+2(5.63e-05)]_6 8329 3.33e-04 90_[+1(6.62e-05)]_352_\ [+2(6.94e-07)]_25 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************