******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/133/133.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10055 1.0000 500 10837 1.0000 500 19897 1.0000 500 21976 1.0000 500 22075 1.0000 500 2328 1.0000 500 23461 1.0000 500 24311 1.0000 500 2564 1.0000 500 262795 1.0000 500 262976 1.0000 500 263315 1.0000 500 263879 1.0000 500 270359 1.0000 500 34191 1.0000 500 34511 1.0000 500 38060 1.0000 500 38768 1.0000 500 43097 1.0000 500 4730 1.0000 500 5519 1.0000 500 6876 1.0000 500 6950 1.0000 500 9570 1.0000 500 9908 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/133/133.seqs.fa -oc motifs/133 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 25 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 12500 N= 25 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.272 C 0.221 G 0.246 T 0.262 Background letter frequencies (from dataset with add-one prior applied): A 0.272 C 0.221 G 0.246 T 0.262 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 12 sites = 22 llr = 197 E-value = 9.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :95:98246165 pos.-specific C a:3a1:852913 probability G :::::1:22::: matrix T :12:::::::32 bits 2.2 * * 2.0 * * 1.7 * * 1.5 * ** * Relative 1.3 * ** * * Entropy 1.1 ** ** * * (12.9 bits) 0.9 ** **** * 0.7 ** ***** ** 0.4 ** ******** 0.2 ************ 0.0 ------------ Multilevel CAACAACCACAA consensus C AA TC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 43097 115 1.44e-06 CCCCCGTTGT CAACAACGACAC ACTACCTGAG 9908 220 1.92e-06 CCTCTACTTC CACCAACCGCAA AGGACGGAGG 6950 72 3.78e-06 ACTTACCGGC CAACAAACACTA TCCAATTACA 9570 435 4.93e-06 TTTGAAGAGC CATCAACAACTC CTCTCTCCAC 2328 260 4.93e-06 CAATGTGGCG CAACAACGGCAA ACGAAAGGTG 21976 99 8.50e-06 GACACGTTCT CTCCAACCACAA ACTCAGCAAT 4730 305 1.16e-05 GGCAATCCTC CAACATCCACAA AGGAAAGCAA 270359 472 1.16e-05 GAACTTGTCT CAACAAAAGCAA AGCAAAATCA 38768 159 1.28e-05 ACCTAACATC CAACAACCAATA GTCACAACAC 38060 18 1.28e-05 GATTGCAAGT CAGCAACCACAT CTTTCCATCT 263879 481 1.76e-05 GCAGTGATAT CATCAACAGCTC TCAACAAC 22075 361 2.16e-05 ATCCATATCA CACCAACACCCA AGTCACAAAC 23461 473 2.86e-05 TTCTTCCAGA CAACAGCAACTT GTTGAGCACC 262795 232 3.15e-05 GCAGCGATGC CACCAACCCAAA TGGGTAGTAG 263315 271 5.21e-05 CTCTCCCAGG CAACCACCCCTT GTTAGACGAA 24311 301 5.70e-05 TGGGTTAACA CAACACCACCAC ACAGATACCC 19897 433 6.18e-05 AGTGCAAAGT CACCCAAAACAC CAAGCACTGC 6876 438 7.77e-05 ACGCGTGTTT CGTCAACAACAT TTCCTATTTA 262976 471 8.36e-05 TAGTGTTGTG CAACAAAGTCAA AAGAAAGTGC 10837 366 1.19e-04 GTTTAGTGAC CTTCAACGACTT GAAAAAGGCT 34511 465 1.28e-04 CAGCCAAAAT CAACAGACACCC GCCTCCTCAA 34191 162 1.47e-04 AGCACGTAAT CACCAACCAGAG GTATATTCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 43097 1.4e-06 114_[+1]_374 9908 1.9e-06 219_[+1]_269 6950 3.8e-06 71_[+1]_417 9570 4.9e-06 434_[+1]_54 2328 4.9e-06 259_[+1]_229 21976 8.5e-06 98_[+1]_390 4730 1.2e-05 304_[+1]_184 270359 1.2e-05 471_[+1]_17 38768 1.3e-05 158_[+1]_330 38060 1.3e-05 17_[+1]_471 263879 1.8e-05 480_[+1]_8 22075 2.2e-05 360_[+1]_128 23461 2.9e-05 472_[+1]_16 262795 3.1e-05 231_[+1]_257 263315 5.2e-05 270_[+1]_218 24311 5.7e-05 300_[+1]_188 19897 6.2e-05 432_[+1]_56 6876 7.8e-05 437_[+1]_51 262976 8.4e-05 470_[+1]_18 10837 0.00012 365_[+1]_123 34511 0.00013 464_[+1]_24 34191 0.00015 161_[+1]_327 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=12 seqs=22 43097 ( 115) CAACAACGACAC 1 9908 ( 220) CACCAACCGCAA 1 6950 ( 72) CAACAAACACTA 1 9570 ( 435) CATCAACAACTC 1 2328 ( 260) CAACAACGGCAA 1 21976 ( 99) CTCCAACCACAA 1 4730 ( 305) CAACATCCACAA 1 270359 ( 472) CAACAAAAGCAA 1 38768 ( 159) CAACAACCAATA 1 38060 ( 18) CAGCAACCACAT 1 263879 ( 481) CATCAACAGCTC 1 22075 ( 361) CACCAACACCCA 1 23461 ( 473) CAACAGCAACTT 1 262795 ( 232) CACCAACCCAAA 1 263315 ( 271) CAACCACCCCTT 1 24311 ( 301) CAACACCACCAC 1 19897 ( 433) CACCCAAAACAC 1 6876 ( 438) CGTCAACAACAT 1 262976 ( 471) CAACAAAGTCAA 1 10837 ( 366) CTTCAACGACTT 1 34511 ( 465) CAACAGACACCC 1 34191 ( 162) CACCAACCAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 12225 bayes= 9.47118 E= 9.5e-001 -1110 218 -1110 -1110 167 -1110 -243 -152 88 31 -243 -53 -1110 218 -1110 -1110 174 -128 -1110 -1110 159 -228 -143 -252 -26 181 -1110 -1110 42 104 -43 -1110 112 -28 -43 -252 -158 197 -243 -1110 112 -128 -1110 28 74 31 -243 -20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 22 E= 9.5e-001 0.000000 1.000000 0.000000 0.000000 0.863636 0.000000 0.045455 0.090909 0.500000 0.272727 0.045455 0.181818 0.000000 1.000000 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.818182 0.045455 0.090909 0.045455 0.227273 0.772727 0.000000 0.000000 0.363636 0.454545 0.181818 0.000000 0.590909 0.181818 0.181818 0.045455 0.090909 0.863636 0.045455 0.000000 0.590909 0.090909 0.000000 0.318182 0.454545 0.272727 0.045455 0.227273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- CA[AC]CAA[CA][CA]AC[AT][ACT] -------------------------------------------------------------------------------- Time 5.24 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 12 sites = 25 llr = 209 E-value = 2.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 3:::51::65:4 pos.-specific C ::2:::::::3: probability G 42:a22aa:546 matrix T 378:36::4:3: bits 2.2 2.0 * 1.7 * ** 1.5 * ** Relative 1.3 ** ** Entropy 1.1 ** ** * (12.1 bits) 0.9 *** ** * * 0.7 *** ***** * 0.4 ********* * 0.2 ************ 0.0 ------------ Multilevel GTTGATGGAAGG consensus AGC TG TGTA sequence T G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 9570 88 2.95e-06 GTGTGCGAAC ATTGATGGAGTG CCTACCAGGG 34191 358 2.95e-06 AGCGCTAGAA GTTGATGGAATA GTTTCTACGA 38768 323 7.73e-06 ATTTTCGCAA GTTGGTGGAAGA ATCAAAGGCA 5519 212 1.22e-05 TCGTTTCTTC GTTGTGGGAGGG TATTTCCATC 38060 294 1.22e-05 GACACTCACA ATTGATGGTAGA TCAGTATTTC 9908 270 1.47e-05 GTCTACATCG TTTGATGGTGTA TGCGATGAAG 23461 278 1.47e-05 TGTCATTGCT TTTGTTGGTGTG TTCGTCATGT 2564 158 2.04e-05 GTGAAAGTAA GGTGGTGGAGGG GGAGGAGCAG 262976 108 2.98e-05 ATTTTTGGCC TTTGTTGGTACA TCCTTGGCAA 6876 178 3.76e-05 GTGATGAATA AGTGATGGTGTG GTGACGTTTG 43097 63 4.65e-05 AAGAGTGGCA TTCGATGGAATA CATTGAATGC 10837 161 4.65e-05 TTTACGAGGG TTTGTGGGTGTG GAGGCAGCCT 34511 312 6.68e-05 TGAAATGTTC GTCGAGGGTACG TTCAGGCACG 19897 283 7.40e-05 TGCATCCTGT CTTGTTGGAAGG ACTGACAACG 10055 275 7.40e-05 GCAGTGGAGC AGTGAGGGTAGG GGACGTTTGA 263315 335 8.04e-05 GCATAGGCGG TGTGGTGGTGGA TTCACTAGAG 4730 126 9.20e-05 TACTGTTTCG ATCGAGGGAAGA ATCGTCATGG 24311 158 9.86e-05 TAATAACTAT GTCGAAGGAACG ACCAACGAAA 6950 176 1.15e-04 ACTACACAAG GTTGGTGGCACG ATGAACAAGC 262795 118 1.15e-04 TGGATTTTGG GTTGTTGGAAAA AGTGTTTGTG 270359 340 1.47e-04 GCGTGAGGCG TGTGGAGGAGGG AAGAAGGATT 263879 181 1.58e-04 CTCGGAGAGG AGCGAGGGAACG GTAATGATGT 22075 340 1.67e-04 AACGTCGTTC GTTGATCGAGCA TCCATATCAC 2328 329 2.52e-04 TCGTTCCAAA GTTGGTGTTGCG AGAAGGAAAC 21976 332 5.00e-04 CCCCAATCAG AATGTAGGAGTG ATATTGACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 9570 2.9e-06 87_[+2]_401 34191 2.9e-06 357_[+2]_131 38768 7.7e-06 322_[+2]_166 5519 1.2e-05 211_[+2]_277 38060 1.2e-05 293_[+2]_195 9908 1.5e-05 269_[+2]_219 23461 1.5e-05 277_[+2]_211 2564 2e-05 157_[+2]_331 262976 3e-05 107_[+2]_381 6876 3.8e-05 177_[+2]_311 43097 4.6e-05 62_[+2]_426 10837 4.6e-05 160_[+2]_328 34511 6.7e-05 311_[+2]_177 19897 7.4e-05 282_[+2]_206 10055 7.4e-05 274_[+2]_214 263315 8e-05 334_[+2]_154 4730 9.2e-05 125_[+2]_363 24311 9.9e-05 157_[+2]_331 6950 0.00012 175_[+2]_313 262795 0.00012 117_[+2]_371 270359 0.00015 339_[+2]_149 263879 0.00016 180_[+2]_308 22075 0.00017 339_[+2]_149 2328 0.00025 328_[+2]_160 21976 0.0005 331_[+2]_157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=12 seqs=25 9570 ( 88) ATTGATGGAGTG 1 34191 ( 358) GTTGATGGAATA 1 38768 ( 323) GTTGGTGGAAGA 1 5519 ( 212) GTTGTGGGAGGG 1 38060 ( 294) ATTGATGGTAGA 1 9908 ( 270) TTTGATGGTGTA 1 23461 ( 278) TTTGTTGGTGTG 1 2564 ( 158) GGTGGTGGAGGG 1 262976 ( 108) TTTGTTGGTACA 1 6876 ( 178) AGTGATGGTGTG 1 43097 ( 63) TTCGATGGAATA 1 10837 ( 161) TTTGTGGGTGTG 1 34511 ( 312) GTCGAGGGTACG 1 19897 ( 283) CTTGTTGGAAGG 1 10055 ( 275) AGTGAGGGTAGG 1 263315 ( 335) TGTGGTGGTGGA 1 4730 ( 126) ATCGAGGGAAGA 1 24311 ( 158) GTCGAAGGAACG 1 6950 ( 176) GTTGGTGGCACG 1 262795 ( 118) GTTGTTGGAAAA 1 270359 ( 340) TGTGGAGGAGGG 1 263879 ( 181) AGCGAGGGAACG 1 22075 ( 340) GTTGATCGAGCA 1 2328 ( 329) GTTGGTGTTGCG 1 21976 ( 332) AATGTAGGAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 12225 bayes= 8.93074 E= 2.2e+000 4 -246 70 10 -276 -1129 -3 146 -1129 -14 -1129 161 -1129 -1129 203 -1129 82 -1129 -3 10 -118 -1129 -3 129 -1129 -246 197 -1129 -1129 -1129 197 -271 104 -246 -1129 61 93 -1129 97 -1129 -276 34 55 29 56 -1129 129 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 25 E= 2.2e+000 0.280000 0.040000 0.400000 0.280000 0.040000 0.000000 0.240000 0.720000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 0.480000 0.000000 0.240000 0.280000 0.120000 0.000000 0.240000 0.640000 0.000000 0.040000 0.960000 0.000000 0.000000 0.000000 0.960000 0.040000 0.560000 0.040000 0.000000 0.400000 0.520000 0.000000 0.480000 0.000000 0.040000 0.280000 0.360000 0.320000 0.400000 0.000000 0.600000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [GAT][TG][TC]G[ATG][TG]GG[AT][AG][GTC][GA] -------------------------------------------------------------------------------- Time 10.96 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 11 llr = 160 E-value = 2.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :11:1:411:8::4:4::2:1 pos.-specific C 8::5:21:35:282:3185:6 probability G :13:152:62::23:2:1::2 matrix T 28658349:328:2a2914a1 bits 2.2 2.0 * * 1.7 * * 1.5 * * * * * * Relative 1.3 * * *** * ** * Entropy 1.1 ** ** * *** * ** * (20.9 bits) 0.9 ** ** ** *** * ** * 0.7 ****** ****** * ** ** 0.4 ****** ****** * ***** 0.2 ************* * ***** 0.0 --------------------- Multilevel CTTCTGATGCATCATATCCTC consensus GT TT CT G C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 10837 233 1.07e-09 CGTTTTTCGT CTTTTGGTGGATCGTGTCCTC ATATTGTCTA 262976 259 6.84e-09 GTTGATCTGT CTATTGATGCATGGTATCCTC CAAAGTCAGG 5519 191 1.18e-08 TTAGATCAGG TTGTTGTTCCATCGTTTCTTC GTTGTGGGAG 38060 35 7.24e-08 CACATCTTTC CATCTGATGCACCATCTCATG GACTGAGCAG 34191 19 7.89e-08 ATTGTGGTCA TTTCTCATACATCCTATCATC GCAACAGACA 9908 59 1.41e-07 TGTGCGGTTG CTGTTGTTGCATCTTGCTCTC CATGATAAGT 6876 387 1.41e-07 TCTCAGGTTG CTTCGTATCTTTCCTCTCTTC CTGGTGCGAT 263315 20 1.41e-07 CGTCCCTTAC CTTCACTTGTATCATCTGTTC AAAGTTCCAT 9570 321 3.00e-07 CTCCTATAAG CTTTTTTAGTATCTTTTCCTA AGTGGACAAA 43097 470 3.71e-07 CTCCCGGCTC CTGCTGCTCCTTGATATCCTT TTATCCCACC 270359 90 3.98e-07 CCTGGTTGAG CGTCTTGTGGACCATATCTTG CCAATTGGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10837 1.1e-09 232_[+3]_247 262976 6.8e-09 258_[+3]_221 5519 1.2e-08 190_[+3]_289 38060 7.2e-08 34_[+3]_445 34191 7.9e-08 18_[+3]_461 9908 1.4e-07 58_[+3]_421 6876 1.4e-07 386_[+3]_93 263315 1.4e-07 19_[+3]_460 9570 3e-07 320_[+3]_159 43097 3.7e-07 469_[+3]_10 270359 4e-07 89_[+3]_390 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=11 10837 ( 233) CTTTTGGTGGATCGTGTCCTC 1 262976 ( 259) CTATTGATGCATGGTATCCTC 1 5519 ( 191) TTGTTGTTCCATCGTTTCTTC 1 38060 ( 35) CATCTGATGCACCATCTCATG 1 34191 ( 19) TTTCTCATACATCCTATCATC 1 9908 ( 59) CTGTTGTTGCATCTTGCTCTC 1 6876 ( 387) CTTCGTATCTTTCCTCTCTTC 1 263315 ( 20) CTTCACTTGTATCATCTGTTC 1 9570 ( 321) CTTTTTTAGTATCTTTTCCTA 1 43097 ( 470) CTGCTGCTCCTTGATATCCTT 1 270359 ( 90) CGTCTTGTGGACCATATCTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 12000 bayes= 11.1171 E= 2.4e+000 -1010 189 -1010 -53 -158 -1010 -143 164 -158 -1010 15 128 -1010 130 -1010 80 -158 -1010 -143 164 -1010 -28 115 6 42 -128 -43 47 -158 -1010 -1010 180 -158 31 137 -1010 -1010 130 -43 6 159 -1010 -1010 -53 -1010 -28 -1010 164 -1010 189 -43 -1010 42 -28 15 -53 -1010 -1010 -1010 193 42 31 -43 -53 -1010 -128 -1010 180 -1010 189 -143 -152 -58 104 -1010 47 -1010 -1010 -1010 193 -158 153 -43 -152 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 11 E= 2.4e+000 0.000000 0.818182 0.000000 0.181818 0.090909 0.000000 0.090909 0.818182 0.090909 0.000000 0.272727 0.636364 0.000000 0.545455 0.000000 0.454545 0.090909 0.000000 0.090909 0.818182 0.000000 0.181818 0.545455 0.272727 0.363636 0.090909 0.181818 0.363636 0.090909 0.000000 0.000000 0.909091 0.090909 0.272727 0.636364 0.000000 0.000000 0.545455 0.181818 0.272727 0.818182 0.000000 0.000000 0.181818 0.000000 0.181818 0.000000 0.818182 0.000000 0.818182 0.181818 0.000000 0.363636 0.181818 0.272727 0.181818 0.000000 0.000000 0.000000 1.000000 0.363636 0.272727 0.181818 0.181818 0.000000 0.090909 0.000000 0.909091 0.000000 0.818182 0.090909 0.090909 0.181818 0.454545 0.000000 0.363636 0.000000 0.000000 0.000000 1.000000 0.090909 0.636364 0.181818 0.090909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- CT[TG][CT]T[GT][AT]T[GC][CT]ATC[AG]T[AC]TC[CT]TC -------------------------------------------------------------------------------- Time 17.01 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10055 6.69e-02 274_[+2(7.40e-05)]_214 10837 1.61e-07 160_[+2(4.65e-05)]_60_\ [+3(1.07e-09)]_247 19897 2.37e-02 282_[+2(7.40e-05)]_138_\ [+1(6.18e-05)]_56 21976 1.71e-02 98_[+1(8.50e-06)]_390 22075 7.22e-03 360_[+1(2.16e-05)]_128 2328 3.35e-03 259_[+1(4.93e-06)]_229 23461 5.00e-03 277_[+2(1.47e-05)]_183_\ [+1(2.86e-05)]_16 24311 1.20e-02 157_[+2(9.86e-05)]_131_\ [+1(5.70e-05)]_188 2564 8.15e-02 157_[+2(2.04e-05)]_331 262795 2.29e-02 231_[+1(3.15e-05)]_257 262976 4.23e-07 107_[+2(2.98e-05)]_139_\ [+3(6.84e-09)]_191_[+1(8.36e-05)]_18 263315 1.01e-05 19_[+3(1.41e-07)]_230_\ [+1(5.21e-05)]_52_[+2(8.04e-05)]_154 263879 1.12e-02 480_[+1(1.76e-05)]_8 270359 1.14e-05 89_[+3(3.98e-07)]_117_\ [+1(2.86e-05)]_232_[+1(1.16e-05)]_17 34191 7.88e-07 18_[+3(7.89e-08)]_318_\ [+2(2.95e-06)]_131 34511 2.25e-02 311_[+2(6.68e-05)]_177 38060 2.98e-07 17_[+1(1.28e-05)]_5_[+3(7.24e-08)]_\ 238_[+2(1.22e-05)]_195 38768 7.47e-04 158_[+1(1.28e-05)]_152_\ [+2(7.73e-06)]_166 43097 6.05e-07 62_[+2(4.65e-05)]_40_[+1(1.44e-06)]_\ 343_[+3(3.71e-07)]_10 4730 8.91e-03 125_[+2(9.20e-05)]_167_\ [+1(1.16e-05)]_184 5519 3.19e-06 190_[+3(1.18e-08)]_[+2(1.22e-05)]_\ 277 6876 7.38e-06 177_[+2(3.76e-05)]_197_\ [+3(1.41e-07)]_30_[+1(7.77e-05)]_51 6950 3.99e-03 71_[+1(3.78e-06)]_417 9570 1.26e-07 87_[+2(2.95e-06)]_221_\ [+3(3.00e-07)]_93_[+1(4.93e-06)]_7_[+1(6.63e-05)]_8_[+1(8.96e-05)]_15 9908 1.15e-07 58_[+3(1.41e-07)]_140_\ [+1(1.92e-06)]_38_[+2(1.47e-05)]_54_[+2(6.68e-05)]_153 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************