******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/137/137.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10059 1.0000 500 10353 1.0000 500 1038 1.0000 500 10624 1.0000 500 10856 1.0000 500 10889 1.0000 500 11184 1.0000 500 11187 1.0000 500 11576 1.0000 500 11756 1.0000 500 17314 1.0000 500 1762 1.0000 500 1850 1.0000 500 1871 1.0000 500 1912 1.0000 500 20680 1.0000 500 2086 1.0000 500 20977 1.0000 500 2107 1.0000 500 21083 1.0000 500 21168 1.0000 500 21681 1.0000 500 21690 1.0000 500 21713 1.0000 500 21887 1.0000 500 22307 1.0000 500 22682 1.0000 500 23082 1.0000 500 2319 1.0000 500 24245 1.0000 500 24480 1.0000 500 2515 1.0000 500 25506 1.0000 500 25535 1.0000 500 25719 1.0000 500 25860 1.0000 500 261394 1.0000 500 263399 1.0000 500 263810 1.0000 500 264157 1.0000 500 26769 1.0000 500 269113 1.0000 500 270302 1.0000 500 30149 1.0000 500 3064 1.0000 500 3167 1.0000 500 3204 1.0000 500 32945 1.0000 500 33024 1.0000 500 3426 1.0000 500 34514 1.0000 500 35956 1.0000 500 3661 1.0000 500 37584 1.0000 500 37793 1.0000 500 38602 1.0000 500 38764 1.0000 500 3913 1.0000 500 3966 1.0000 500 4114 1.0000 500 4456 1.0000 500 5038 1.0000 500 5094 1.0000 500 5212 1.0000 500 5225 1.0000 500 5335 1.0000 500 5420 1.0000 500 5600 1.0000 500 5659 1.0000 500 6032 1.0000 500 6140 1.0000 500 6594 1.0000 500 6710 1.0000 500 7696 1.0000 500 8821 1.0000 500 8841 1.0000 500 9793 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/137/137.seqs.fa -oc motifs/137 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 77 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 38500 N= 77 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.264 C 0.226 G 0.244 T 0.266 Background letter frequencies (from dataset with add-one prior applied): A 0.264 C 0.226 G 0.244 T 0.266 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 51 llr = 518 E-value = 2.3e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :31:7:522:42111:312:: pos.-specific C 113:1::11:1::2:::11:1 probability G 732a:55446257159:6326 matrix T 224:25:43444354171583 bits 2.1 1.9 * 1.7 * 1.5 * * Relative 1.3 * * Entropy 1.1 * ** * * (14.7 bits) 0.9 * **** * * ** ** 0.6 * **** * * *** ** 0.4 * **** * ** **** ** 0.2 * ******************* 0.0 --------------------- Multilevel GATGAGATGGTGGTGGTGTTG consensus GC TGGTTATTCT A GGT sequence TG A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 270302 244 1.07e-09 CGGGACATGC GTTGATAGGGTGGTGGTGATG GAAGGATCCA 263810 245 1.07e-09 CGGGACATGC GTTGATAGGGTGGTGGTGATG GAAGGATCCA 5600 119 1.59e-08 TTGTAAGGAG GAGGAGGTGTATTTGGTGTTG GCTAGGGGCG 21681 77 3.54e-08 GGGTGATGGT GTCGATGTTGAGGCGGTGATG CCGATGACGA 3426 69 5.15e-08 GAGGTTGTAT GTTGTTGTTGTGGTGGTGGTG TATCAGCCTC 37793 8 1.23e-07 GAGGGCG GAGGAGGCTGTGGTGGTGATG TTTGTGTGGG 35956 40 3.17e-07 TGAAAGATGC GGTGAGAGAGTAGGTGTGGTG AGAGATGGGA 5212 16 4.26e-07 TATTTGGTAA TGCGAGAAGTTTGTTGAGTTG TAGCAGAGCA 5659 21 6.51e-07 GATTGCAGTG CTGGATAGGTGTGTGGTGTTG CTTTGTTTGT 22307 383 6.51e-07 ATCTTAACGT GATGATACTTCTGTTGTGTTG GGTCGAATGA 269113 293 8.54e-07 ACGAACCAAG GGTGAGATGGAGGCGTTCTTG GCTGATGAAG 11756 112 9.75e-07 AATCTTCGGA GGCGAGAATGAGGTTGGGTTG GGTTGCCACC 5335 306 1.26e-06 GAGAAGAAGA GTTGTTGTCGGGTTGGTGTTG GTTAATGGTG 34514 92 1.43e-06 GGGAGTGCTT GGAGAGGGTTAGGTTTTGGTG AGATGGAGGT 264157 338 1.43e-06 CGGCGGTGAT GACGAGGATGTTGTTGTTGTT TGTGTAGGTC 2515 462 1.43e-06 ATTGTTCTAA GGTGAGATATTGTTTGATGTG CAATCAGTGA 21168 285 1.43e-06 GCTTTGGATT GGTGTGGTGTAGTTTGAGGTT TAGGAGTGGT 261394 171 1.62e-06 CTCGTGACAT CACGATGGGGGTGCGGTGATG GCAAGGGATT 4456 418 1.84e-06 GACGGATCAT TGGGAGGGATGGGTTGAGATG CGATTGGTGC 10624 91 1.84e-06 TTTGACGTGT GATGAGAGATGGGATTTGTTG CCATTGGCTG 7696 219 2.63e-06 CGGCGGTGTT GGTGCTGGTGATGCTGAGGTG AGAGCGGAGC 37584 281 2.95e-06 GCCGTAGCCG GGAGTTATTGATGTGGTATTG GAGGGCTGGT 3167 107 3.31e-06 GCCTACAGAC GACGATGTTGAGTTGGAGATC ATATGAGGTT 20977 223 5.71e-06 TCAAGACACA GCCGATATGTGAGGTGTGTTT GGCTTTACAC 6594 330 7.04e-06 GAGGACTGAT GCTGAGGGCTCTTTGGTGTTT GACTTCTCCG 1762 161 7.79e-06 TAGGACGACT GAGGAGGTGAAGGCGGTGAGT TTCATGGTGT 11187 406 7.79e-06 CAGAGGGGTG TGTGAGAAGGGGTCTGTATTG GGTCGGGAAA 5420 287 8.62e-06 GTGTAGCTTT GACGAGGTGTTGTCAGTGAGT GTGATCACGG 10059 161 1.05e-05 AACCAGTTTG GCCGAGAGGGTTGGTGTGCGT GCATCTTGTT 263399 257 1.16e-05 ACGTCGCTGG AAGGCGATGGTGGTGGTGGTG CCATTTCGGC 21713 54 1.16e-05 GCATGAAGCA TGTGAGAGAGATGATGTCTGG GATCCCAACC 1038 194 1.40e-05 GTTCGCACTC GACGATGGTGATGAGGAATGT TTTGACTGCA 9793 220 1.68e-05 TAGCACCACT GCCGTTGGTGAGGAGGTGCGG CCATTGTTGG 3661 388 1.68e-05 TCGTTTGTTC TGTGATGGTTGAGCGGAGGTT TGAATAGTCA 3064 59 1.84e-05 GCAGTGTCCA GTGGGTAGGTAGGTTTTGGTG TAAGAATTGA 10889 326 2.60e-05 AGTGAGAAGG GTGGATAGATTGATAGTATTG ATGATGATAA 10353 153 2.60e-05 TAATGATAGT GACGAGGAGTTGAAGGATTTG TTGAAACGAG 21083 116 3.07e-05 GCAAACTTCC GGCGAGACGGAAGTGGATCTT CCTCAGAGGA 21690 172 3.91e-05 TGCAGGAGAT GGAGAGGGGTAATGAGTGTGG AGAAGACCTT 6032 43 4.94e-05 TCGATGCACT GCTGTTGTCGGTGTGGTGCGT GGCGACGCCC 2107 225 4.94e-05 CTGACATAGT GAGGTGATTGCTGTAGTCGTT GAGATTGGTG 6140 173 5.74e-05 CGGCAGTCTT CATGTTGTTTCTGTTGATTTG TGAGAGGTTG 38602 214 5.74e-05 GGGATCGTAT GGTGAGAAGATATCAGTGTTT GTTGTGGACA 33024 140 5.74e-05 GCATGCATTG GAGGAGAAAGTATATGAAATG TTCACTTCAG 11184 68 5.74e-05 TTGATTGGAA GTGGAGGAAGAGATGGAAGGG CTGCCATGTT 32945 270 6.17e-05 TCGTCGGACG TTGGATATCTTTTTTGAGTTC GCGTTAAGCA 1871 129 6.17e-05 AACCGGATGG TGTGTTGTGGTGTCGTTGTGT ACCTTCCACT 25506 53 7.65e-05 TATCGTTGAG GAAGAGAAATCTTATGTTTTG GATTGTGGAT 17314 346 1.00e-04 TACCGCATTC TTTGATATAGTGGCTGTCAGC TGTCTGAAGA 1912 195 1.14e-04 GTTTGAAATA CATGCTAGAGAAGTGGACGTG ATTGCTACAG 11576 323 1.14e-04 TCGGTCGTCG GTCGATATCGTTGGTTTTTGT CGAGATAAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 270302 1.1e-09 243_[+1]_236 263810 1.1e-09 244_[+1]_235 5600 1.6e-08 118_[+1]_361 21681 3.5e-08 76_[+1]_403 3426 5.2e-08 68_[+1]_411 37793 1.2e-07 7_[+1]_472 35956 3.2e-07 39_[+1]_440 5212 4.3e-07 15_[+1]_464 5659 6.5e-07 20_[+1]_459 22307 6.5e-07 382_[+1]_97 269113 8.5e-07 292_[+1]_187 11756 9.7e-07 111_[+1]_368 5335 1.3e-06 305_[+1]_174 34514 1.4e-06 91_[+1]_388 264157 1.4e-06 337_[+1]_142 2515 1.4e-06 461_[+1]_18 21168 1.4e-06 284_[+1]_195 261394 1.6e-06 170_[+1]_309 4456 1.8e-06 417_[+1]_62 10624 1.8e-06 90_[+1]_389 7696 2.6e-06 218_[+1]_261 37584 2.9e-06 280_[+1]_199 3167 3.3e-06 106_[+1]_373 20977 5.7e-06 222_[+1]_257 6594 7e-06 329_[+1]_150 1762 7.8e-06 160_[+1]_319 11187 7.8e-06 405_[+1]_74 5420 8.6e-06 286_[+1]_193 10059 1e-05 160_[+1]_319 263399 1.2e-05 256_[+1]_223 21713 1.2e-05 53_[+1]_426 1038 1.4e-05 193_[+1]_286 9793 1.7e-05 219_[+1]_260 3661 1.7e-05 387_[+1]_92 3064 1.8e-05 58_[+1]_421 10889 2.6e-05 325_[+1]_154 10353 2.6e-05 152_[+1]_327 21083 3.1e-05 115_[+1]_364 21690 3.9e-05 171_[+1]_308 6032 4.9e-05 42_[+1]_437 2107 4.9e-05 224_[+1]_255 6140 5.7e-05 172_[+1]_307 38602 5.7e-05 213_[+1]_266 33024 5.7e-05 139_[+1]_340 11184 5.7e-05 67_[+1]_412 32945 6.2e-05 269_[+1]_210 1871 6.2e-05 128_[+1]_351 25506 7.7e-05 52_[+1]_427 17314 0.0001 345_[+1]_134 1912 0.00011 194_[+1]_285 11576 0.00011 322_[+1]_157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=51 270302 ( 244) GTTGATAGGGTGGTGGTGATG 1 263810 ( 245) GTTGATAGGGTGGTGGTGATG 1 5600 ( 119) GAGGAGGTGTATTTGGTGTTG 1 21681 ( 77) GTCGATGTTGAGGCGGTGATG 1 3426 ( 69) GTTGTTGTTGTGGTGGTGGTG 1 37793 ( 8) GAGGAGGCTGTGGTGGTGATG 1 35956 ( 40) GGTGAGAGAGTAGGTGTGGTG 1 5212 ( 16) TGCGAGAAGTTTGTTGAGTTG 1 5659 ( 21) CTGGATAGGTGTGTGGTGTTG 1 22307 ( 383) GATGATACTTCTGTTGTGTTG 1 269113 ( 293) GGTGAGATGGAGGCGTTCTTG 1 11756 ( 112) GGCGAGAATGAGGTTGGGTTG 1 5335 ( 306) GTTGTTGTCGGGTTGGTGTTG 1 34514 ( 92) GGAGAGGGTTAGGTTTTGGTG 1 264157 ( 338) GACGAGGATGTTGTTGTTGTT 1 2515 ( 462) GGTGAGATATTGTTTGATGTG 1 21168 ( 285) GGTGTGGTGTAGTTTGAGGTT 1 261394 ( 171) CACGATGGGGGTGCGGTGATG 1 4456 ( 418) TGGGAGGGATGGGTTGAGATG 1 10624 ( 91) GATGAGAGATGGGATTTGTTG 1 7696 ( 219) GGTGCTGGTGATGCTGAGGTG 1 37584 ( 281) GGAGTTATTGATGTGGTATTG 1 3167 ( 107) GACGATGTTGAGTTGGAGATC 1 20977 ( 223) GCCGATATGTGAGGTGTGTTT 1 6594 ( 330) GCTGAGGGCTCTTTGGTGTTT 1 1762 ( 161) GAGGAGGTGAAGGCGGTGAGT 1 11187 ( 406) TGTGAGAAGGGGTCTGTATTG 1 5420 ( 287) GACGAGGTGTTGTCAGTGAGT 1 10059 ( 161) GCCGAGAGGGTTGGTGTGCGT 1 263399 ( 257) AAGGCGATGGTGGTGGTGGTG 1 21713 ( 54) TGTGAGAGAGATGATGTCTGG 1 1038 ( 194) GACGATGGTGATGAGGAATGT 1 9793 ( 220) GCCGTTGGTGAGGAGGTGCGG 1 3661 ( 388) TGTGATGGTTGAGCGGAGGTT 1 3064 ( 59) GTGGGTAGGTAGGTTTTGGTG 1 10889 ( 326) GTGGATAGATTGATAGTATTG 1 10353 ( 153) GACGAGGAGTTGAAGGATTTG 1 21083 ( 116) GGCGAGACGGAAGTGGATCTT 1 21690 ( 172) GGAGAGGGGTAATGAGTGTGG 1 6032 ( 43) GCTGTTGTCGGTGTGGTGCGT 1 2107 ( 225) GAGGTGATTGCTGTAGTCGTT 1 6140 ( 173) CATGTTGTTTCTGTTGATTTG 1 38602 ( 214) GGTGAGAAGATATCAGTGTTT 1 33024 ( 140) GAGGAGAAAGTATATGAAATG 1 11184 ( 68) GTGGAGGAAGAGATGGAAGGG 1 32945 ( 270) TTGGATATCTTTTTTGAGTTC 1 1871 ( 129) TGTGTTGTGGTGTCGTTGTGT 1 25506 ( 53) GAAGAGAAATCTTATGTTTTG 1 17314 ( 346) TTTGATATAGTGGCTGTCAGC 1 1912 ( 195) CATGCTAGAGAAGTGGACGTG 1 11576 ( 323) GTCGATATCGTTGGTTTTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 36960 bayes= 10.6492 E= 2.3e-018 -375 -153 161 -76 34 -120 45 -18 -175 28 -5 63 -1232 -1232 203 -1232 150 -194 -363 -59 -1232 -1232 112 82 100 -1232 95 -1232 -58 -194 61 56 -29 -120 68 14 -275 -1232 122 56 42 -120 -47 48 -75 -1232 101 41 -216 -1232 145 4 -94 -7 -132 104 -143 -1232 95 70 -1232 -1232 185 -118 16 -1232 -363 137 -116 -120 141 -96 -29 -153 6 76 -1232 -1232 -5 152 -1232 -194 141 14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 51 E= 2.3e-018 0.019608 0.078431 0.745098 0.156863 0.333333 0.098039 0.333333 0.235294 0.078431 0.274510 0.235294 0.411765 0.000000 0.000000 1.000000 0.000000 0.745098 0.058824 0.019608 0.176471 0.000000 0.000000 0.529412 0.470588 0.529412 0.000000 0.470588 0.000000 0.176471 0.058824 0.372549 0.392157 0.215686 0.098039 0.392157 0.294118 0.039216 0.000000 0.568627 0.392157 0.352941 0.098039 0.176471 0.372549 0.156863 0.000000 0.490196 0.352941 0.058824 0.000000 0.666667 0.274510 0.137255 0.215686 0.098039 0.549020 0.098039 0.000000 0.470588 0.431373 0.000000 0.000000 0.882353 0.117647 0.294118 0.000000 0.019608 0.686275 0.117647 0.098039 0.647059 0.137255 0.215686 0.078431 0.254902 0.450980 0.000000 0.000000 0.235294 0.764706 0.000000 0.058824 0.647059 0.294118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- G[AGT][TCG]GA[GT][AG][TG][GTA][GT][TA][GT][GT][TC][GT]G[TA]G[TGA][TG][GT] -------------------------------------------------------------------------------- Time 54.23 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 12 sites = 67 llr = 542 E-value = 6.2e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 26:33:65:441 pos.-specific C 8:671a41a446 probability G ::1:1::::1:: matrix T :43:5::4:123 bits 2.1 * 1.9 * * 1.7 * * 1.5 * * Relative 1.3 * * * Entropy 1.1 * * ** * (11.7 bits) 0.9 **** ** * * 0.6 **** ** * * 0.4 **** **** ** 0.2 ************ 0.0 ------------ Multilevel CACCTCAACACC consensus TTAA CT CAT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 5659 292 3.53e-07 TAAATCGTTG CACCTCCTCCCC CTACCGTATA 21168 468 4.98e-07 TTGAAGCAAG CTCCTCAACCCC ATTACTTTTG 5212 480 6.32e-07 CATGAATTGA CACCACAACACC GTTGGCACC 24245 479 1.17e-06 GCACACAGTC CACCTCCTCCAC GCCACCCCAC 3913 27 2.59e-06 CTCTGCCTTC CACCACCACCAC CACCACCACC 30149 452 3.08e-06 ACCGCGAGGC CTCCTCATCCAC AGAACAATAG 26769 368 5.82e-06 ACGTTCGCTC CATCTCCTCCAC TTCTAGTGAA 20680 349 5.82e-06 AAATCATTGA CTCCACAACCAC ACCATTGGGA 22307 489 7.09e-06 CCAACTAGAA CACCACACCACC 10059 438 8.24e-06 CAGCTCAACA CACCTCATCCAT CGCTATTCCT 3064 477 9.94e-06 TACAGTACAA CACATCAACATC GACACGCCAA 10624 379 1.19e-05 CTTCACAGAT CTTCACCACCCC TTCACTGTAC 21083 433 1.39e-05 TGTCTACCCT CATCTCATCATC ACACCAGAGA 32945 401 1.62e-05 TGGCAACATC CACCTCCTCGAC AATCCAACGA 25719 413 1.62e-05 TCACTCGTCT CATCTCCTCCCT CTACTCTTTC 17314 470 1.88e-05 TGATACGATC CATCGCAACACC AACACCAACC 11184 470 2.19e-05 AGGCCGATTG CACCGCCTCCAC TCATCAACAG 24480 66 2.49e-05 CATAACTCCC ATCCTCCTCCCC CTCCAACGCA 6032 386 3.35e-05 GAATATTGAC CTCATCATCCCT TTGCTCAGCT 37793 219 3.35e-05 TACACAAGGG CTTCTCCTCCTC TCACTCTCTC 2515 158 3.35e-05 ATGGAAGAGT CACCTCATCGTC ATCGCAAGAA 11756 383 3.35e-05 CCTCAGCCGG CACCTCCACAAA GCCATCAATC 5420 488 3.78e-05 CAACACATCA CATCACAACAAT C 21690 414 3.78e-05 ATTTAGAGGA CTTCCCAACCCC AACTTTCTGA 6710 279 4.30e-05 TCAAACGTTT CTCCACAACGAC TCCTCTGTTC 4114 461 4.30e-05 CTGCCGCCCT CTGCTCAACACC TCTTTCTGCA 2319 233 4.30e-05 TAGCTTTTCT CACAACACCAAC AATAGGTTTC 1871 439 4.30e-05 GGCTAGGTAA CATATCATCATC TGATCAACAT 3167 482 4.83e-05 ACGATCCTAC CACAACCCCAAC AACCACC 1850 489 4.83e-05 AGGGGGGCTG AACAACAACACC 270302 444 6.11e-05 AACAGAGAGC CTCCGCCACACT GCAGCAATCT 263810 445 6.11e-05 AACAGAGAGC CTCCGCCACACT GCAGCAATCT 37584 81 6.79e-05 AACATCTTCC CTCCTCCTCGCT ACCCTCATCA 25860 446 7.63e-05 ACCAGCTGAC AACAACAACAAC GCACAGAACA 21713 451 7.63e-05 GTTCAGTGAT CATCCCCCCCCC AACTCTTCAC 2107 480 7.63e-05 AGCAACAAAT CACATCAACAAA CGTATCATC 10889 397 7.63e-05 GTGTAGATTG CAGCTCAACCCT CAATCCATGG 8821 124 8.47e-05 ACGCGCTATG CAGCTCCACACT CGGAAATTCG 7696 34 8.47e-05 TTCACGCTCC CTCCTCCTCTCT TCCGCCTCAT 21887 16 8.47e-05 CACATAGTAG CACACCCACCCT TGATTCTGTC 21681 455 8.47e-05 GTCTAGGTTG AACAACCACAAC CTTCACATGG 1762 406 8.47e-05 CTCGTCTCGA ATCCTCCTCCTC TTGATACATT 8841 204 9.36e-05 CTCCATAGTC AACCTCAACCTT GGCATCACCA 34514 467 1.04e-04 CTCTGTTCGC ATCCTCCACTCC ACAATCATCA 5335 474 1.14e-04 CGACGACACA CTCCACAGCACC TTCCGCGACA 23082 142 1.36e-04 CTCGTTTATT CATATCATCACA CGAACCATGG 10856 375 1.36e-04 TTGGTGCGTC AATCTCATCCAT CGTCACCCTT 1038 487 1.36e-04 TCAAAACCAA AACAACAACACT AG 1912 126 1.49e-04 GAACAAGTAA CTCAACCACATT GGCTGCAAGA 5094 177 1.63e-04 GTTGGAGAGA CACCACACCAAA CTATGGTCTG 5225 49 1.77e-04 CATTGAAGTC CATATCAACGAT GGTAACGATA 3204 140 1.77e-04 TTACATTTCA CTTCTCCCCTAC TCCGTCTTTT 3426 181 1.93e-04 TCTTCAGTGC AATATCATCCTC GTTGTGTTGA 11576 220 1.93e-04 ATAGTCAAGA CTTCACCTCACA AATATCCCGA 264157 443 2.09e-04 AAATAAATAG CTTCACAGCACC CAAGTTCTCA 20977 451 2.24e-04 TGAGTTTACA AATATCAACTCC ACGTGAGGGA 11187 33 2.42e-04 GAAGACCGAA CACTTCCTCAAC GTAATCTCCC 4456 12 2.60e-04 TGATGCCGAT AATCCCACCCCC AAATTGTTGG 263399 55 2.80e-04 GAGGACGATA CTTCGCAACACA GATTTGGTTG 25506 476 2.80e-04 AGATCCGACT CACCGCACCGTC AGAACAACCT 9793 208 3.21e-04 TAAAAGGTAG CATAGCACCACT GCCGTTGGTG 38602 454 3.21e-04 TTCTACGTTC CATACCATCGAC CCCAGCATAA 261394 454 3.44e-04 AGATGAAGCC CTCACCATCATT CTACTCTCCA 38764 30 3.90e-04 AGATTGGTGG CTGCTCAACTTC AAGGCGAAGG 10353 72 4.14e-04 CTTCCCACCT CACAACAAACAC GTGGAGGATC 2086 481 5.81e-04 TGTGTGGCGG CTCATCCAACTC CACAGAAG 3661 445 7.45e-04 TGGCTCTATT ATTATCCCCTAC ATTTCGTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 5659 3.5e-07 291_[+2]_197 21168 5e-07 467_[+2]_21 5212 6.3e-07 479_[+2]_9 24245 1.2e-06 478_[+2]_10 3913 2.6e-06 26_[+2]_462 30149 3.1e-06 451_[+2]_37 26769 5.8e-06 367_[+2]_121 20680 5.8e-06 348_[+2]_140 22307 7.1e-06 488_[+2] 10059 8.2e-06 437_[+2]_51 3064 9.9e-06 476_[+2]_12 10624 1.2e-05 378_[+2]_110 21083 1.4e-05 432_[+2]_56 32945 1.6e-05 400_[+2]_88 25719 1.6e-05 412_[+2]_76 17314 1.9e-05 469_[+2]_19 11184 2.2e-05 469_[+2]_19 24480 2.5e-05 65_[+2]_423 6032 3.4e-05 385_[+2]_103 37793 3.4e-05 218_[+2]_270 2515 3.4e-05 157_[+2]_331 11756 3.4e-05 382_[+2]_106 5420 3.8e-05 487_[+2]_1 21690 3.8e-05 413_[+2]_75 6710 4.3e-05 278_[+2]_210 4114 4.3e-05 460_[+2]_28 2319 4.3e-05 232_[+2]_256 1871 4.3e-05 438_[+2]_50 3167 4.8e-05 481_[+2]_7 1850 4.8e-05 488_[+2] 270302 6.1e-05 443_[+2]_45 263810 6.1e-05 444_[+2]_44 37584 6.8e-05 80_[+2]_408 25860 7.6e-05 445_[+2]_43 21713 7.6e-05 450_[+2]_38 2107 7.6e-05 479_[+2]_9 10889 7.6e-05 396_[+2]_92 8821 8.5e-05 123_[+2]_365 7696 8.5e-05 33_[+2]_455 21887 8.5e-05 15_[+2]_473 21681 8.5e-05 454_[+2]_34 1762 8.5e-05 405_[+2]_83 8841 9.4e-05 203_[+2]_285 34514 0.0001 466_[+2]_22 5335 0.00011 473_[+2]_15 23082 0.00014 141_[+2]_347 10856 0.00014 374_[+2]_114 1038 0.00014 486_[+2]_2 1912 0.00015 125_[+2]_363 5094 0.00016 176_[+2]_312 5225 0.00018 48_[+2]_440 3204 0.00018 139_[+2]_349 3426 0.00019 180_[+2]_308 11576 0.00019 219_[+2]_269 264157 0.00021 442_[+2]_46 20977 0.00022 450_[+2]_38 11187 0.00024 32_[+2]_456 4456 0.00026 11_[+2]_477 263399 0.00028 54_[+2]_434 25506 0.00028 475_[+2]_13 9793 0.00032 207_[+2]_281 38602 0.00032 453_[+2]_35 261394 0.00034 453_[+2]_35 38764 0.00039 29_[+2]_459 10353 0.00041 71_[+2]_417 2086 0.00058 480_[+2]_8 3661 0.00074 444_[+2]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=12 seqs=67 5659 ( 292) CACCTCCTCCCC 1 21168 ( 468) CTCCTCAACCCC 1 5212 ( 480) CACCACAACACC 1 24245 ( 479) CACCTCCTCCAC 1 3913 ( 27) CACCACCACCAC 1 30149 ( 452) CTCCTCATCCAC 1 26769 ( 368) CATCTCCTCCAC 1 20680 ( 349) CTCCACAACCAC 1 22307 ( 489) CACCACACCACC 1 10059 ( 438) CACCTCATCCAT 1 3064 ( 477) CACATCAACATC 1 10624 ( 379) CTTCACCACCCC 1 21083 ( 433) CATCTCATCATC 1 32945 ( 401) CACCTCCTCGAC 1 25719 ( 413) CATCTCCTCCCT 1 17314 ( 470) CATCGCAACACC 1 11184 ( 470) CACCGCCTCCAC 1 24480 ( 66) ATCCTCCTCCCC 1 6032 ( 386) CTCATCATCCCT 1 37793 ( 219) CTTCTCCTCCTC 1 2515 ( 158) CACCTCATCGTC 1 11756 ( 383) CACCTCCACAAA 1 5420 ( 488) CATCACAACAAT 1 21690 ( 414) CTTCCCAACCCC 1 6710 ( 279) CTCCACAACGAC 1 4114 ( 461) CTGCTCAACACC 1 2319 ( 233) CACAACACCAAC 1 1871 ( 439) CATATCATCATC 1 3167 ( 482) CACAACCCCAAC 1 1850 ( 489) AACAACAACACC 1 270302 ( 444) CTCCGCCACACT 1 263810 ( 445) CTCCGCCACACT 1 37584 ( 81) CTCCTCCTCGCT 1 25860 ( 446) AACAACAACAAC 1 21713 ( 451) CATCCCCCCCCC 1 2107 ( 480) CACATCAACAAA 1 10889 ( 397) CAGCTCAACCCT 1 8821 ( 124) CAGCTCCACACT 1 7696 ( 34) CTCCTCCTCTCT 1 21887 ( 16) CACACCCACCCT 1 21681 ( 455) AACAACCACAAC 1 1762 ( 406) ATCCTCCTCCTC 1 8841 ( 204) AACCTCAACCTT 1 34514 ( 467) ATCCTCCACTCC 1 5335 ( 474) CTCCACAGCACC 1 23082 ( 142) CATATCATCACA 1 10856 ( 375) AATCTCATCCAT 1 1038 ( 487) AACAACAACACT 1 1912 ( 126) CTCAACCACATT 1 5094 ( 177) CACCACACCAAA 1 5225 ( 49) CATATCAACGAT 1 3204 ( 140) CTTCTCCCCTAC 1 3426 ( 181) AATATCATCCTC 1 11576 ( 220) CTTCACCTCACA 1 264157 ( 443) CTTCACAGCACC 1 20977 ( 451) AATATCAACTCC 1 11187 ( 33) CACTTCCTCAAC 1 4456 ( 12) AATCCCACCCCC 1 263399 ( 55) CTTCGCAACACA 1 25506 ( 476) CACCGCACCGTC 1 9793 ( 208) CATAGCACCACT 1 38602 ( 454) CATACCATCGAC 1 261394 ( 454) CTCACCATCATT 1 38764 ( 30) CTGCTCAACTTC 1 10353 ( 72) CACAACAAACAC 1 2086 ( 481) CTCATCCAACTC 1 3661 ( 445) ATTATCCCCTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 37653 bayes= 10.488 E= 6.2e-013 -44 184 -1271 -1271 121 -1271 -1271 54 -1271 140 -203 37 32 154 -1271 -415 10 -133 -122 97 -1271 215 -1271 -1271 114 89 -1271 -1271 81 -60 -303 43 -314 210 -1271 -1271 71 72 -122 -157 44 99 -1271 -46 -156 151 -1271 1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 67 E= 6.2e-013 0.194030 0.805970 0.000000 0.000000 0.611940 0.000000 0.000000 0.388060 0.000000 0.597015 0.059701 0.343284 0.328358 0.656716 0.000000 0.014925 0.283582 0.089552 0.104478 0.522388 0.000000 1.000000 0.000000 0.000000 0.582090 0.417910 0.000000 0.000000 0.462687 0.149254 0.029851 0.358209 0.029851 0.970149 0.000000 0.000000 0.432836 0.373134 0.104478 0.089552 0.358209 0.447761 0.000000 0.194030 0.089552 0.641791 0.000000 0.268657 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- C[AT][CT][CA][TA]C[AC][AT]C[AC][CA][CT] -------------------------------------------------------------------------------- Time 106.27 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 20 sites = 31 llr = 353 E-value = 2.5e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 4479283458:5558:6a93 pos.-specific C 54116:45225234:72:15 probability G :12:223:3:532:132::2 matrix T 11::::::::::111:1::: bits 2.1 1.9 * 1.7 * 1.5 * ** Relative 1.3 * * ** Entropy 1.1 * * * ** ** (16.4 bits) 0.9 * * * ** ** ** 0.6 * **** * ** *** ** 0.4 * **** ***** ******* 0.2 ******************** 0.0 -------------------- Multilevel CAAACACCAACAAAACAAAC consensus ACG GAG GGCC G A sequence A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 20680 131 1.01e-08 CAACAATATC ACAAGAACAACGACACAAAC AAGTCACACA 25860 462 3.58e-08 AACAACGCAC AGAACAACAACAACACGAAC ACCATATCAT 21887 470 6.33e-08 CTTTGCACAG CAAACAACAACCTAACAAAA ACAAACAACA 1871 204 1.23e-07 GCTTCCACAA CGAACACCCAGAGAACAAAG TCTACAGCCG 24480 471 2.29e-07 TTCAAAAGAG AAGACGACGAGAACACAAAA CACAAAACAA 5225 249 2.58e-07 GAGAGGCAGC ACAAAGCAAAGGCCACAAAC AGACACATCA 263399 454 3.25e-07 TAACAGTTTT AAGAAACAACGAACACAAAC TCAAATGGCA 6140 376 4.08e-07 AAAGCTGGCA ACAACACACAGAACAGGAAG AACCAGTCAG 30149 372 4.56e-07 CTGCTGACAG CACAAAGCAACACAAGAAAC CAGCCAGCCG 5212 228 6.32e-07 ATTGTAAGGA AAAACAACTAGAATACAAAC TTACAAAACA 21681 479 6.32e-07 TCACATGGCA CCAACAACGACCGCAGCAAG CC 1038 437 7.80e-07 TCATCACCGA CCAACAAAGAGAGAAGAACC CTGTTCTCGT 1762 481 1.72e-06 CAGCTAGATA CTCAAACACACACAACAAAC 2107 279 2.08e-06 TTGATGCATT CAAACAGAGACATATGAAAG TTTGGGGGCT 6594 218 2.28e-06 ACGCCGGCGT TCAACGGCAAGGCAACCAAG CGTACCTCCC 23082 375 2.28e-06 ACCAACGCGG CCACCAGCGCCCCAACAAAA CGCTGCTTTC 2515 302 2.98e-06 CCAGACATAA CTGACACAGACATTACAAAG AAAACAAGCA 26769 186 3.55e-06 ATTTTCATTG ACAACAGCAACACCGTCAAC CAATATCATC 10059 44 3.87e-06 GCCGAAGATA CAAAGAGTACGAAAACGAAC CGACTTGTGC 2086 71 4.22e-06 ACAACTGCAT CCAACGCCGAGGGAAGTAAA GATGAAAGTG 3966 14 4.59e-06 TGGGTGCATC CCAACAGAGCCGCAAGTAAA TGTTCCAGGG 24245 374 4.59e-06 CGTAGTTTCA CAGAGGAAAACAGTACAAAA TAAAAAAGAT 38764 436 4.99e-06 GAAGCTGATA ACAACAAGAAGAAATCCAAA CGGCGTGACG 9793 464 5.88e-06 CGCCGGCCGC CGAAGGCAAACGACAGCAAA CTTCCAAACA 25719 20 5.88e-06 CCGAATTTTC TAGAGAGAGAGAGAACGAAC GATGCGGCAG 21690 475 6.37e-06 TCCCTCTTGG CTGCAACCAACCAAACAAAG AACAAA 25506 377 7.47e-06 AACGTCCAAT AAAAGACCCCCAACACCAAT TTTTAATATT 1912 144 7.47e-06 CATTGGCTGC AAGAAAGAAAGCACGCGAAC GGATCGAAGA 20977 63 9.42e-06 CCAGTTGTTT CCAACAGCAATGACGCAACC GCGGTGTAGG 10889 69 9.42e-06 AGTTAGTTAT CTAACATCCAGGCATCAAAC AGAGGTTATG 7696 422 2.71e-05 GGAAAGACTG AATACCCAAACTAAACAAAC GAGTTCTTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 20680 1e-08 130_[+3]_350 25860 3.6e-08 461_[+3]_19 21887 6.3e-08 469_[+3]_11 1871 1.2e-07 203_[+3]_277 24480 2.3e-07 470_[+3]_10 5225 2.6e-07 248_[+3]_232 263399 3.3e-07 453_[+3]_27 6140 4.1e-07 375_[+3]_105 30149 4.6e-07 371_[+3]_109 5212 6.3e-07 227_[+3]_253 21681 6.3e-07 478_[+3]_2 1038 7.8e-07 436_[+3]_44 1762 1.7e-06 480_[+3] 2107 2.1e-06 278_[+3]_202 6594 2.3e-06 217_[+3]_263 23082 2.3e-06 374_[+3]_106 2515 3e-06 301_[+3]_179 26769 3.6e-06 185_[+3]_295 10059 3.9e-06 43_[+3]_437 2086 4.2e-06 70_[+3]_410 3966 4.6e-06 13_[+3]_467 24245 4.6e-06 373_[+3]_107 38764 5e-06 435_[+3]_45 9793 5.9e-06 463_[+3]_17 25719 5.9e-06 19_[+3]_461 21690 6.4e-06 474_[+3]_6 25506 7.5e-06 376_[+3]_104 1912 7.5e-06 143_[+3]_337 20977 9.4e-06 62_[+3]_418 10889 9.4e-06 68_[+3]_412 7696 2.7e-05 421_[+3]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=20 seqs=31 20680 ( 131) ACAAGAACAACGACACAAAC 1 25860 ( 462) AGAACAACAACAACACGAAC 1 21887 ( 470) CAAACAACAACCTAACAAAA 1 1871 ( 204) CGAACACCCAGAGAACAAAG 1 24480 ( 471) AAGACGACGAGAACACAAAA 1 5225 ( 249) ACAAAGCAAAGGCCACAAAC 1 263399 ( 454) AAGAAACAACGAACACAAAC 1 6140 ( 376) ACAACACACAGAACAGGAAG 1 30149 ( 372) CACAAAGCAACACAAGAAAC 1 5212 ( 228) AAAACAACTAGAATACAAAC 1 21681 ( 479) CCAACAACGACCGCAGCAAG 1 1038 ( 437) CCAACAAAGAGAGAAGAACC 1 1762 ( 481) CTCAAACACACACAACAAAC 1 2107 ( 279) CAAACAGAGACATATGAAAG 1 6594 ( 218) TCAACGGCAAGGCAACCAAG 1 23082 ( 375) CCACCAGCGCCCCAACAAAA 1 2515 ( 302) CTGACACAGACATTACAAAG 1 26769 ( 186) ACAACAGCAACACCGTCAAC 1 10059 ( 44) CAAAGAGTACGAAAACGAAC 1 2086 ( 71) CCAACGCCGAGGGAAGTAAA 1 3966 ( 14) CCAACAGAGCCGCAAGTAAA 1 24245 ( 374) CAGAGGAAAACAGTACAAAA 1 38764 ( 436) ACAACAAGAAGAAATCCAAA 1 9793 ( 464) CGAAGGCAAACGACAGCAAA 1 25719 ( 20) TAGAGAGAGAGAGAACGAAC 1 21690 ( 475) CTGCAACCAACCAAACAAAG 1 25506 ( 377) AAAAGACCCCCAACACCAAT 1 1912 ( 144) AAGAAAGAAAGCACGCGAAC 1 20977 ( 63) CCAACAGCAATGACGCAACC 1 10889 ( 69) CTAACATCCAGGCATCAAAC 1 7696 ( 422) AATACCCAAACTAAACAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 37037 bayes= 10.1845 E= 2.5e-005 55 128 -1160 -204 55 78 -133 -104 136 -181 -11 -304 183 -181 -1160 -1160 -45 144 -33 -1160 155 -280 -33 -1160 14 65 40 -304 67 119 -292 -304 97 -49 25 -304 167 -49 -1160 -1160 -1160 119 89 -304 106 -49 8 -304 78 19 -33 -146 97 78 -1160 -146 161 -1160 -133 -146 -1160 165 8 -304 114 -22 -60 -204 192 -1160 -1160 -1160 183 -181 -1160 -1160 -3 110 -11 -304 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 31 E= 2.5e-005 0.387097 0.548387 0.000000 0.064516 0.387097 0.387097 0.096774 0.129032 0.677419 0.064516 0.225806 0.032258 0.935484 0.064516 0.000000 0.000000 0.193548 0.612903 0.193548 0.000000 0.774194 0.032258 0.193548 0.000000 0.290323 0.354839 0.322581 0.032258 0.419355 0.516129 0.032258 0.032258 0.516129 0.161290 0.290323 0.032258 0.838710 0.161290 0.000000 0.000000 0.000000 0.516129 0.451613 0.032258 0.548387 0.161290 0.258065 0.032258 0.451613 0.258065 0.193548 0.096774 0.516129 0.387097 0.000000 0.096774 0.806452 0.000000 0.096774 0.096774 0.000000 0.709677 0.258065 0.032258 0.580645 0.193548 0.161290 0.064516 1.000000 0.000000 0.000000 0.000000 0.935484 0.064516 0.000000 0.000000 0.258065 0.483871 0.225806 0.032258 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [CA][AC][AG]ACA[CGA][CA][AG]A[CG][AG][AC][AC]A[CG]AAA[CAG] -------------------------------------------------------------------------------- Time 156.77 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10059 6.18e-06 43_[+3(3.87e-06)]_97_[+1(1.05e-05)]_\ 256_[+2(8.24e-06)]_51 10353 4.68e-02 152_[+1(2.60e-05)]_327 1038 2.24e-05 193_[+1(1.40e-05)]_222_\ [+3(7.80e-07)]_44 10624 4.30e-04 90_[+1(1.84e-06)]_267_\ [+2(1.19e-05)]_110 10856 2.84e-01 500 10889 2.05e-04 68_[+3(9.42e-06)]_237_\ [+1(2.60e-05)]_50_[+2(7.63e-05)]_92 11184 2.00e-03 67_[+1(5.74e-05)]_381_\ [+2(2.19e-05)]_19 11187 1.56e-02 189_[+1(7.13e-05)]_195_\ [+1(7.79e-06)]_74 11576 5.66e-02 500 11756 2.63e-05 111_[+1(9.75e-07)]_250_\ [+2(3.35e-05)]_106 17314 3.48e-03 469_[+2(1.88e-05)]_19 1762 1.80e-05 160_[+1(7.79e-06)]_13_\ [+1(4.58e-05)]_190_[+2(8.47e-05)]_63_[+3(1.72e-06)] 1850 1.07e-01 488_[+2(4.83e-05)] 1871 5.94e-06 128_[+1(6.17e-05)]_54_\ [+3(1.23e-07)]_215_[+2(4.30e-05)]_50 1912 1.01e-03 143_[+3(7.47e-06)]_337 20680 1.66e-06 130_[+3(1.01e-08)]_198_\ [+2(5.82e-06)]_90_[+2(1.19e-05)]_38 2086 1.04e-02 70_[+3(4.22e-06)]_410 20977 1.37e-04 62_[+3(9.42e-06)]_140_\ [+1(5.71e-06)]_257 2107 9.65e-05 224_[+1(4.94e-05)]_33_\ [+3(2.08e-06)]_181_[+2(7.63e-05)]_9 21083 4.44e-03 115_[+1(3.07e-05)]_296_\ [+2(1.39e-05)]_56 21168 2.29e-05 284_[+1(1.43e-06)]_162_\ [+2(4.98e-07)]_21 21681 5.70e-08 76_[+1(3.54e-08)]_149_\ [+1(7.65e-05)]_187_[+2(8.47e-05)]_12_[+3(6.32e-07)]_2 21690 1.14e-04 171_[+1(3.91e-05)]_221_\ [+2(3.78e-05)]_49_[+3(6.37e-06)]_6 21713 1.07e-03 53_[+1(1.16e-05)]_376_\ [+2(7.63e-05)]_38 21887 1.29e-04 15_[+2(8.47e-05)]_442_\ [+3(6.33e-08)]_11 22307 1.42e-05 82_[+1(1.68e-05)]_239_\ [+1(1.40e-05)]_19_[+1(6.51e-07)]_85_[+2(7.09e-06)] 22682 1.92e-01 500 23082 2.79e-03 374_[+3(2.28e-06)]_106 2319 8.43e-02 232_[+2(4.30e-05)]_256 24245 1.33e-04 373_[+3(4.59e-06)]_85_\ [+2(1.17e-06)]_10 24480 1.81e-05 65_[+2(2.49e-05)]_393_\ [+3(2.29e-07)]_10 2515 2.89e-06 157_[+2(3.35e-05)]_132_\ [+3(2.98e-06)]_140_[+1(1.43e-06)]_18 25506 1.20e-03 52_[+1(7.65e-05)]_303_\ [+3(7.47e-06)]_104 25535 6.68e-01 500 25719 8.59e-04 19_[+3(5.88e-06)]_373_\ [+2(1.62e-05)]_76 25860 3.59e-05 445_[+2(7.63e-05)]_4_[+3(3.58e-08)]_\ 19 261394 8.69e-04 170_[+1(1.62e-06)]_309 263399 1.61e-05 256_[+1(1.16e-05)]_176_\ [+3(3.25e-07)]_27 263810 8.74e-07 244_[+1(1.07e-09)]_179_\ [+2(6.11e-05)]_44 264157 1.15e-03 337_[+1(1.43e-06)]_142 26769 3.34e-04 185_[+3(3.55e-06)]_162_\ [+2(5.82e-06)]_121 269113 1.12e-02 292_[+1(8.54e-07)]_187 270302 8.74e-07 243_[+1(1.07e-09)]_179_\ [+2(6.11e-05)]_45 30149 3.99e-05 371_[+3(4.56e-07)]_4_[+3(9.31e-05)]_\ 36_[+2(3.08e-06)]_37 3064 5.92e-04 58_[+1(1.84e-05)]_397_\ [+2(9.94e-06)]_12 3167 1.89e-05 62_[+3(7.47e-06)]_24_[+1(3.31e-06)]_\ 4_[+1(7.13e-05)]_125_[+3(4.21e-05)]_180_[+3(2.38e-05)]_3 3204 8.23e-02 500 32945 7.84e-03 269_[+1(6.17e-05)]_110_\ [+2(1.62e-05)]_88 33024 1.58e-01 139_[+1(5.74e-05)]_340 3426 1.96e-04 34_[+1(4.58e-05)]_13_[+1(5.15e-08)]_\ 411 34514 1.49e-03 91_[+1(1.43e-06)]_388 35956 3.52e-03 39_[+1(3.17e-07)]_440 3661 8.26e-03 387_[+1(1.68e-05)]_92 37584 1.05e-03 80_[+2(6.79e-05)]_5_[+2(7.63e-05)]_\ 171_[+1(2.95e-06)]_199 37793 3.01e-05 7_[+1(1.23e-07)]_190_[+2(3.35e-05)]_\ 270 38602 6.85e-02 213_[+1(5.74e-05)]_266 38764 1.36e-02 435_[+3(4.99e-06)]_45 3913 2.89e-04 26_[+2(2.59e-06)]_[+2(8.24e-06)]_\ 403_[+2(3.78e-05)]_35 3966 1.23e-02 13_[+3(4.59e-06)]_467 4114 8.69e-02 460_[+2(4.30e-05)]_28 4456 1.02e-03 417_[+1(1.84e-06)]_62 5038 4.30e-01 500 5094 1.85e-02 168_[+3(3.72e-05)]_312 5212 6.34e-09 15_[+1(4.26e-07)]_105_\ [+1(8.20e-05)]_65_[+3(6.32e-07)]_232_[+2(6.32e-07)]_9 5225 4.69e-04 248_[+3(2.58e-07)]_232 5335 1.04e-03 214_[+1(5.74e-05)]_70_\ [+1(1.26e-06)]_174 5420 7.97e-04 286_[+1(8.62e-06)]_180_\ [+2(3.78e-05)]_1 5600 4.98e-04 118_[+1(1.59e-08)]_361 5659 9.05e-07 20_[+1(6.51e-07)]_179_\ [+2(6.11e-05)]_59_[+2(3.53e-07)]_197 6032 1.42e-02 42_[+1(4.94e-05)]_322_\ [+2(3.35e-05)]_103 6140 3.25e-04 172_[+1(5.74e-05)]_182_\ [+3(4.08e-07)]_105 6594 2.55e-04 217_[+3(2.28e-06)]_92_\ [+1(7.04e-06)]_150 6710 1.01e-01 278_[+2(4.30e-05)]_210 7696 7.71e-05 33_[+2(8.47e-05)]_91_[+1(3.91e-05)]_\ 61_[+1(2.63e-06)]_182_[+3(2.71e-05)]_59 8821 7.09e-02 123_[+2(8.47e-05)]_365 8841 2.38e-01 203_[+2(9.36e-05)]_285 9793 3.07e-04 219_[+1(1.68e-05)]_223_\ [+3(5.88e-06)]_17 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************