******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/143/143.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10823 1.0000 500 11386 1.0000 500 11960 1.0000 500 20595 1.0000 500 20786 1.0000 500 21429 1.0000 500 2150 1.0000 500 21516 1.0000 500 22517 1.0000 500 23170 1.0000 500 261631 1.0000 500 262863 1.0000 500 264863 1.0000 500 32316 1.0000 500 3265 1.0000 500 33242 1.0000 500 35685 1.0000 500 37995 1.0000 500 4256 1.0000 500 4569 1.0000 500 5922 1.0000 500 6532 1.0000 500 6974 1.0000 500 9884 1.0000 500 bd1793 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/143/143.seqs.fa -oc motifs/143 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 25 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 12500 N= 25 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.273 C 0.225 G 0.243 T 0.259 Background letter frequencies (from dataset with add-one prior applied): A 0.273 C 0.225 G 0.243 T 0.259 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 16 sites = 23 llr = 223 E-value = 1.8e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :273:517:4152:93 pos.-specific C 4::3:121:3:12::: probability G :812a45273926a14 matrix T 6:21::2:3::2:::3 bits 2.2 1.9 * * 1.7 * * 1.5 * * ** Relative 1.3 * * * ** Entropy 1.1 * * * ** (14.0 bits) 0.9 ** * ** * ** 0.6 *** ** ** * ** 0.4 *** ** **** **** 0.2 *** ************ 0.0 ---------------- Multilevel TGACGAGAGAGAGGAG consensus C A GC TC G T sequence G G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 10823 151 5.20e-09 ACTGTGAAGT TGAAGAGAGCGAGGAT GAAGAAATGA 23170 339 2.49e-08 TCATCACGGA CGAAGGGAGGGAGGAG GGTGGACGAA 262863 443 3.88e-07 TCAGTCTTGT TAACGAGAGAGAGGAA GCGAGAGAGT 21429 132 4.54e-07 CGATCAGCGT TGACGGGAGAAAGGAT TGTTGAATGT 4569 185 6.15e-07 GAGTCTCGCC TGAGGGCAGCGTGGAG GTGAGATGAG 11386 83 7.16e-07 GGGGTTGTGG CGACGACCGAGAGGAT GACGCGGGAT 6532 196 1.91e-06 TTGTTTACGA TGAAGAGGTGGAGGAA TCCCATTGAT 22517 443 3.10e-06 ACTGTCACGT CGTCGATATCGAGGAT ACCAAAGAAC 9884 134 6.12e-06 CTTTGGCATG TGCAGAAAGCGAGGAG ATTACAACAC 5922 99 6.80e-06 TTGGGAGAGG TGATGGCAGGGAAGAA GGGTGGTGTT 37995 55 8.39e-06 TCAATTGTCA TGAGGCGAGGGAAGAA AAACCTTAGC 35685 12 1.03e-05 GGTAGTGTGT TGGCGAGAGAGGCGAA TCCGATGTGA 4256 57 1.50e-05 GGGACAATGA CGAAGATGGCGGAGAG ACGGTGAATG 11960 10 2.54e-05 ATTGATGAA CGAAGGTCGAGTCGAG GGCTGGGCAG bd1793 186 3.24e-05 TGGATGACGT CGAGGACACCGCGGAT GCTCCTGCTG 20595 115 3.24e-05 TGAGTAAAGA TGACGGAGGAGATGAT TGGTTGAACT 32316 151 4.74e-05 GTCGGGTGGC CGTGGATATGAAGGAG GAAGAACTAG 261631 21 5.88e-05 GCCGATGGCG GAAGGAGATAGGGGAT AACTAAGTAA 6974 361 6.30e-05 GACCGTCCAG TGACGGAAGGGTCGGT ACTAACACTG 20786 95 9.90e-05 ATCTTGGTCT TATTGGGGGAGCGGAG TGGTGGGTCT 21516 254 1.05e-04 TTGTCGCAGT CGGTGGGATAATGGAG TCAAATGGTG 2150 211 1.25e-04 TCAATTGGGA CGAAGCCCTCGGCGAA CTGATGCCAT 3265 305 1.82e-04 CCGTATTCAC TATCGAGATCGGAGGG AGGACCATCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10823 5.2e-09 150_[+1]_334 23170 2.5e-08 338_[+1]_146 262863 3.9e-07 442_[+1]_42 21429 4.5e-07 131_[+1]_353 4569 6.1e-07 184_[+1]_300 11386 7.2e-07 82_[+1]_402 6532 1.9e-06 195_[+1]_289 22517 3.1e-06 442_[+1]_42 9884 6.1e-06 133_[+1]_351 5922 6.8e-06 98_[+1]_386 37995 8.4e-06 54_[+1]_430 35685 1e-05 11_[+1]_473 4256 1.5e-05 56_[+1]_428 11960 2.5e-05 9_[+1]_475 bd1793 3.2e-05 185_[+1]_299 20595 3.2e-05 114_[+1]_370 32316 4.7e-05 150_[+1]_334 261631 5.9e-05 20_[+1]_464 6974 6.3e-05 360_[+1]_124 20786 9.9e-05 94_[+1]_390 21516 0.00011 253_[+1]_231 2150 0.00013 210_[+1]_274 3265 0.00018 304_[+1]_180 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=16 seqs=23 10823 ( 151) TGAAGAGAGCGAGGAT 1 23170 ( 339) CGAAGGGAGGGAGGAG 1 262863 ( 443) TAACGAGAGAGAGGAA 1 21429 ( 132) TGACGGGAGAAAGGAT 1 4569 ( 185) TGAGGGCAGCGTGGAG 1 11386 ( 83) CGACGACCGAGAGGAT 1 6532 ( 196) TGAAGAGGTGGAGGAA 1 22517 ( 443) CGTCGATATCGAGGAT 1 9884 ( 134) TGCAGAAAGCGAGGAG 1 5922 ( 99) TGATGGCAGGGAAGAA 1 37995 ( 55) TGAGGCGAGGGAAGAA 1 35685 ( 12) TGGCGAGAGAGGCGAA 1 4256 ( 57) CGAAGATGGCGGAGAG 1 11960 ( 10) CGAAGGTCGAGTCGAG 1 bd1793 ( 186) CGAGGACACCGCGGAT 1 20595 ( 115) TGACGGAGGAGATGAT 1 32316 ( 151) CGTGGATATGAAGGAG 1 261631 ( 21) GAAGGAGATAGGGGAT 1 6974 ( 361) TGACGGAAGGGTCGGT 1 20786 ( 95) TATTGGGGGAGCGGAG 1 21516 ( 254) CGGTGGGATAATGGAG 1 2150 ( 211) CGAAGCCCTCGGCGAA 1 3265 ( 305) TATCGAGATCGGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 12125 bayes= 9.44261 E= 1.8e-002 -1117 80 -248 112 -65 -1117 176 -1117 135 -237 -148 -58 16 63 -16 -99 -1117 -1117 204 -1117 94 -137 69 -1117 -106 -5 98 -58 135 -79 -48 -1117 -1117 -237 142 23 52 63 10 -1117 -106 -1117 184 -1117 94 -137 -16 -58 -65 -37 132 -257 -1117 -1117 204 -1117 174 -1117 -148 -1117 -6 -1117 69 42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 23 E= 1.8e-002 0.000000 0.391304 0.043478 0.565217 0.173913 0.000000 0.826087 0.000000 0.695652 0.043478 0.086957 0.173913 0.304348 0.347826 0.217391 0.130435 0.000000 0.000000 1.000000 0.000000 0.521739 0.086957 0.391304 0.000000 0.130435 0.217391 0.478261 0.173913 0.695652 0.130435 0.173913 0.000000 0.000000 0.043478 0.652174 0.304348 0.391304 0.347826 0.260870 0.000000 0.130435 0.000000 0.869565 0.000000 0.521739 0.086957 0.217391 0.173913 0.173913 0.173913 0.608696 0.043478 0.000000 0.000000 1.000000 0.000000 0.913043 0.000000 0.086957 0.000000 0.260870 0.000000 0.391304 0.347826 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [TC]GA[CAG]G[AG][GC]A[GT][ACG]G[AG]GGA[GTA] -------------------------------------------------------------------------------- Time 6.24 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 16 sites = 17 llr = 191 E-value = 4.1e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 6:274643557:a812 pos.-specific C :94:6422553a::68 probability G 1122:144:::::23: matrix T 2:11:::11::::::: bits 2.2 * 1.9 ** 1.7 * ** 1.5 * ** * Relative 1.3 * *** * Entropy 1.1 * * ***** * (16.2 bits) 0.9 * *** ******* 0.6 ** *** ******** 0.4 ** **** ******** 0.2 **************** 0.0 ---------------- Multilevel ACCACAAGAAACAACC consensus T AGACGACCC G sequence G CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 33242 144 1.07e-08 TGGCGCATTC ACCACAAAAAACAACC CTCTCTTCTC 37995 476 1.01e-07 TCAACCACAG ACCAACCACCACAACC AAAGCAAAA 32316 47 4.63e-07 AGTTCCACAT ACCGACACACACAACC AGCCAGCCTC 4256 482 6.01e-07 CTCCGAAACG ACCAAAAGTCACAACC GAC 5922 369 1.35e-06 TACACAACAA ACAACACACAACAACA TCAGACACAA bd1793 28 2.04e-06 GTATCAATAG ACCAACGGCAACAAGA GCAAGTAGTC 23170 394 2.48e-06 AACAAGCAGA ACGACGGGACCCAACC AATTCCAATT 20786 259 2.99e-06 GTGTCCGGAA AGAAACAGAAACAACC GCGCGACGAG 22517 132 3.27e-06 CGTTTTCAAT TCGAAAGACAACAGCC TTCAAAGGGC 21516 51 3.27e-06 ACGAAGGTCT TCAACAGGCAACAGGC TAGCTAGCTT 11960 211 3.27e-06 GGCAGTCATC TCAAAAGGCAACAACA CTGAGTGGAC 262863 308 5.01e-06 GCCGAGATCA ACGTCAACACACAAGC CCCTACAAGA 3265 151 5.88e-06 CACGAAATAC GCTGCAACAAACAACC CGGCCAGTGT 264863 160 6.35e-06 ACGTGCCGCC GCCGCAAAACCCAAGC CAGAATCAAC 21429 468 1.28e-05 GGTATGTACC TGGACAGGAACCAAGC AAGCCAGAAG 20595 437 1.28e-05 GCTAGACGGT ACTGCCCTCCCCAACC TTGCTACACC 11386 212 1.36e-05 TTTAATAGGC ACCACCCCCCCCAGAC AAGTTGAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 33242 1.1e-08 143_[+2]_341 37995 1e-07 475_[+2]_9 32316 4.6e-07 46_[+2]_438 4256 6e-07 481_[+2]_3 5922 1.4e-06 368_[+2]_116 bd1793 2e-06 27_[+2]_457 23170 2.5e-06 393_[+2]_91 20786 3e-06 258_[+2]_226 22517 3.3e-06 131_[+2]_353 21516 3.3e-06 50_[+2]_434 11960 3.3e-06 210_[+2]_274 262863 5e-06 307_[+2]_177 3265 5.9e-06 150_[+2]_334 264863 6.3e-06 159_[+2]_325 21429 1.3e-05 467_[+2]_17 20595 1.3e-05 436_[+2]_48 11386 1.4e-05 211_[+2]_273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=16 seqs=17 33242 ( 144) ACCACAAAAAACAACC 1 37995 ( 476) ACCAACCACCACAACC 1 32316 ( 47) ACCGACACACACAACC 1 4256 ( 482) ACCAAAAGTCACAACC 1 5922 ( 369) ACAACACACAACAACA 1 bd1793 ( 28) ACCAACGGCAACAAGA 1 23170 ( 394) ACGACGGGACCCAACC 1 20786 ( 259) AGAAACAGAAACAACC 1 22517 ( 132) TCGAAAGACAACAGCC 1 21516 ( 51) TCAACAGGCAACAGGC 1 11960 ( 211) TCAAAAGGCAACAACA 1 262863 ( 308) ACGTCAACACACAAGC 1 3265 ( 151) GCTGCAACAAACAACC 1 264863 ( 160) GCCGCAAAACCCAAGC 1 21429 ( 468) TGGACAGGAACCAAGC 1 20595 ( 437) ACTGCCCTCCCCAACC 1 11386 ( 212) ACCACCCCCCCCAGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 12125 bayes= 10.2717 E= 4.1e-002 125 -1073 -105 -14 -1073 197 -105 -1073 -21 87 -5 -114 137 -1073 -5 -214 59 138 -1073 -1073 111 65 -204 -1073 59 6 54 -1073 11 6 76 -214 79 106 -1073 -214 96 106 -1073 -1073 137 38 -1073 -1073 -1073 215 -1073 -1073 187 -1073 -1073 -1073 159 -1073 -46 -1073 -221 152 28 -1073 -63 187 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 17 E= 4.1e-002 0.647059 0.000000 0.117647 0.235294 0.000000 0.882353 0.117647 0.000000 0.235294 0.411765 0.235294 0.117647 0.705882 0.000000 0.235294 0.058824 0.411765 0.588235 0.000000 0.000000 0.588235 0.352941 0.058824 0.000000 0.411765 0.235294 0.352941 0.000000 0.294118 0.235294 0.411765 0.058824 0.470588 0.470588 0.000000 0.058824 0.529412 0.470588 0.000000 0.000000 0.705882 0.294118 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.823529 0.000000 0.176471 0.000000 0.058824 0.647059 0.294118 0.000000 0.176471 0.823529 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [AT]C[CAG][AG][CA][AC][AGC][GAC][AC][AC][AC]CAA[CG]C -------------------------------------------------------------------------------- Time 12.31 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 16 sites = 13 llr = 160 E-value = 6.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :233::32:22::524 pos.-specific C 56273a18a28:82:6 probability G ::1:::2:::::::6: matrix T 525:7:41:7:a232: bits 2.2 * * 1.9 * * * 1.7 * * * 1.5 * * *** Relative 1.3 * * *** Entropy 1.1 * *** ** *** * (17.7 bits) 0.9 * *** ****** * 0.6 ** *** ****** ** 0.4 ** *** ********* 0.2 **************** 0.0 ---------------- Multilevel CCTCTCTCCTCTCAGC consensus TTAAC A TTA sequence G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 37995 395 1.19e-09 TTGCCACCGA CCTCTCACCTCTCTGC TGACTGAAGA 21516 196 2.98e-07 AGGCGAAATA CTCATCTCCTCTCTGC CTCACTGTTA 6532 461 4.16e-07 GTACAACGCA TTCCCCTCCTCTCAGA CACAACACCG 32316 408 4.62e-07 GGTTCACCTC TCGCTCACCTCTCAAC TTGTTCTCGT 33242 479 7.65e-07 TCACAAGAAC CTTATCGCCTCTCCTC CACCAC bd1793 65 1.02e-06 CCGCACACTC TCACTCACCTCTTCTC CTGAGTAGCA 5922 312 1.33e-06 TTATCGTTTG TATATCCCCTCTCTGC TTTGAACTCA 35685 470 1.33e-06 CCGAAAGAAA TCTCTCGACTCTCAAA GAGCTCATTT 261631 418 1.44e-06 ATCCATCATA CCACCCGCCCATCAGC TACGAGTCTG 11386 447 1.57e-06 CTCGTTGTCT CCAACCTCCTCTTTGA ACGCGACAGC 4256 462 2.00e-06 CTTTCGCCCC CCTCCCTACACTCCGA AACGACCAAA 11960 72 2.93e-06 TTGAGTCTCA TCACTCATCACTCAGA CGGACTCAAC 22517 407 3.89e-06 ATCCACCATC CATCTCTCCCATCATC TTCTCAACCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 37995 1.2e-09 394_[+3]_90 21516 3e-07 195_[+3]_289 6532 4.2e-07 460_[+3]_24 32316 4.6e-07 407_[+3]_77 33242 7.6e-07 478_[+3]_6 bd1793 1e-06 64_[+3]_420 5922 1.3e-06 311_[+3]_173 35685 1.3e-06 469_[+3]_15 261631 1.4e-06 417_[+3]_67 11386 1.6e-06 446_[+3]_38 4256 2e-06 461_[+3]_23 11960 2.9e-06 71_[+3]_413 22517 3.9e-06 406_[+3]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=16 seqs=13 37995 ( 395) CCTCTCACCTCTCTGC 1 21516 ( 196) CTCATCTCCTCTCTGC 1 6532 ( 461) TTCCCCTCCTCTCAGA 1 32316 ( 408) TCGCTCACCTCTCAAC 1 33242 ( 479) CTTATCGCCTCTCCTC 1 bd1793 ( 65) TCACTCACCTCTTCTC 1 5922 ( 312) TATATCCCCTCTCTGC 1 35685 ( 470) TCTCTCGACTCTCAAA 1 261631 ( 418) CCACCCGCCCATCAGC 1 11386 ( 447) CCAACCTCCTCTTTGA 1 4256 ( 462) CCTCCCTACACTCCGA 1 11960 ( 72) TCACTCATCACTCAGA 1 22517 ( 407) CATCTCTCCCATCATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 12125 bayes= 11.029 E= 6.7e-001 -1035 126 -1035 83 -82 145 -1035 -17 17 -55 -166 83 17 162 -1035 -1035 -1035 45 -1035 142 -1035 215 -1035 -1035 17 -155 -7 57 -82 177 -1035 -175 -1035 215 -1035 -1035 -82 -55 -1035 142 -82 191 -1035 -1035 -1035 -1035 -1035 195 -1035 191 -1035 -75 76 4 -1035 25 -82 -1035 134 -17 50 145 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 13 E= 6.7e-001 0.000000 0.538462 0.000000 0.461538 0.153846 0.615385 0.000000 0.230769 0.307692 0.153846 0.076923 0.461538 0.307692 0.692308 0.000000 0.000000 0.000000 0.307692 0.000000 0.692308 0.000000 1.000000 0.000000 0.000000 0.307692 0.076923 0.230769 0.384615 0.153846 0.769231 0.000000 0.076923 0.000000 1.000000 0.000000 0.000000 0.153846 0.153846 0.000000 0.692308 0.153846 0.846154 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.846154 0.000000 0.153846 0.461538 0.230769 0.000000 0.307692 0.153846 0.000000 0.615385 0.230769 0.384615 0.615385 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [CT][CT][TA][CA][TC]C[TAG]CCTCTC[ATC][GT][CA] -------------------------------------------------------------------------------- Time 18.31 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10823 9.27e-05 150_[+1(5.20e-09)]_334 11386 3.91e-07 82_[+1(7.16e-07)]_113_\ [+2(1.36e-05)]_219_[+3(1.57e-06)]_38 11960 4.69e-06 9_[+1(2.54e-05)]_46_[+3(2.93e-06)]_\ 123_[+2(3.27e-06)]_274 20595 4.50e-03 114_[+1(3.24e-05)]_306_\ [+2(1.28e-05)]_48 20786 2.16e-03 94_[+1(9.90e-05)]_148_\ [+2(2.99e-06)]_69_[+2(4.86e-05)]_141 21429 1.44e-04 131_[+1(4.54e-07)]_320_\ [+2(1.28e-05)]_17 2150 1.20e-01 500 21516 2.13e-06 50_[+2(3.27e-06)]_129_\ [+3(2.98e-07)]_289 22517 9.21e-07 131_[+2(3.27e-06)]_259_\ [+3(3.89e-06)]_20_[+1(3.10e-06)]_42 23170 2.51e-06 338_[+1(2.49e-08)]_39_\ [+2(2.48e-06)]_91 261631 8.02e-04 20_[+1(5.88e-05)]_381_\ [+3(1.44e-06)]_67 262863 3.97e-05 307_[+2(5.01e-06)]_13_\ [+2(5.61e-05)]_90_[+1(3.88e-07)]_42 264863 3.03e-02 159_[+2(6.35e-06)]_325 32316 2.67e-07 46_[+2(4.63e-07)]_88_[+1(4.74e-05)]_\ 241_[+3(4.62e-07)]_77 3265 4.25e-03 150_[+2(5.88e-06)]_334 33242 3.63e-07 143_[+2(1.07e-08)]_319_\ [+3(7.65e-07)]_6 35685 2.27e-04 11_[+1(1.03e-05)]_442_\ [+3(1.33e-06)]_15 37995 5.45e-11 54_[+1(8.39e-06)]_324_\ [+3(1.19e-09)]_65_[+2(1.01e-07)]_9 4256 4.53e-07 56_[+1(1.50e-05)]_389_\ [+3(2.00e-06)]_4_[+2(6.01e-07)]_3 4569 3.92e-03 184_[+1(6.15e-07)]_300 5922 3.19e-07 98_[+1(6.80e-06)]_197_\ [+3(1.33e-06)]_41_[+2(1.35e-06)]_116 6532 6.85e-06 153_[+1(1.37e-05)]_26_\ [+1(1.91e-06)]_249_[+3(4.16e-07)]_24 6974 1.41e-01 360_[+1(6.30e-05)]_124 9884 1.62e-02 133_[+1(6.12e-06)]_351 bd1793 1.48e-06 27_[+2(2.04e-06)]_21_[+3(1.02e-06)]_\ 55_[+3(9.01e-05)]_34_[+1(3.24e-05)]_299 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************