******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/15/15.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10234 1.0000 500 10879 1.0000 500 12152 1.0000 500 12695 1.0000 500 1464 1.0000 500 1637 1.0000 500 1953 1.0000 500 21175 1.0000 500 21517 1.0000 500 21748 1.0000 500 23283 1.0000 500 2343 1.0000 500 23593 1.0000 500 23918 1.0000 500 24512 1.0000 500 258111 1.0000 500 25892 1.0000 500 261226 1.0000 500 262279 1.0000 500 262753 1.0000 500 263427 1.0000 500 264865 1.0000 500 26573 1.0000 500 270230 1.0000 500 270304 1.0000 500 270306 1.0000 500 270308 1.0000 500 270321 1.0000 500 270336 1.0000 500 270340 1.0000 500 270348 1.0000 500 2770 1.0000 500 30976 1.0000 500 31383 1.0000 500 31566 1.0000 500 31851 1.0000 500 32201 1.0000 500 32321 1.0000 500 32332 1.0000 500 32924 1.0000 500 33205 1.0000 500 34681 1.0000 500 35712 1.0000 500 35878 1.0000 500 36235 1.0000 500 37198 1.0000 500 3776 1.0000 500 38085 1.0000 500 38909 1.0000 500 38924 1.0000 500 40156 1.0000 500 4040 1.0000 500 4439 1.0000 500 4748 1.0000 500 4914 1.0000 500 5219 1.0000 500 5434 1.0000 500 547 1.0000 500 575 1.0000 500 5928 1.0000 500 6413 1.0000 500 7155 1.0000 500 7677 1.0000 500 7881 1.0000 500 8248 1.0000 500 8713 1.0000 500 bd208 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/15/15.seqs.fa -oc motifs/15 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 67 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 33500 N= 67 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.264 C 0.236 G 0.232 T 0.268 Background letter frequencies (from dataset with add-one prior applied): A 0.264 C 0.236 G 0.232 T 0.268 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 47 llr = 502 E-value = 2.5e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 142:4::3:::1:2:34:344 pos.-specific C :1:2:113::11:1:::21:: probability G 9:4631922912744616435 matrix T :53238:38176246151231 bits 2.1 1.9 1.7 * * 1.5 * * * Relative 1.3 * * ** Entropy 1.1 * * ** * (15.4 bits) 0.8 * ** *** * ** * 0.6 ** ** *** * **** * 0.4 **** ** ***** **** ** 0.2 ******* ************* 0.0 --------------------- Multilevel GTGGATGATGTTGTTGTGGAG consensus AT T T TGGAA AGA sequence A G C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 263427 42 3.88e-09 TCGTAAAGTG GAGGTTGCTGTTGTGGAGAGA TCTGGGGGTT 262753 45 3.88e-09 GGCGGATGGC GAAGATGGTGTTGATGTGGAG GAGGATGTGG 32201 2 1.82e-08 T GTGTGTGATGTTGTGATGGGA AAATGATGCA 270340 1 1.82e-08 . GTGTGTGATGTTGTGATGGGA AAATGATGCA 10879 135 2.17e-08 TCCTTTCAAG GAGGTTGTTGTTGATATGCAG AAAGGAATCA 36235 2 5.84e-08 T GTGGATGGGGTTGGTGAGCAA GAGAATGATA 270336 3 5.84e-08 AT GTGGATGGGGTTGGTGAGCAA GAGAATGATA 6413 208 1.24e-07 TCTTCATCAT GTTGGCGTTGTTGTTGTGAGA AAGATCCGTT 35712 92 3.68e-07 TGCGCTTTGT GTGGTGGCGGTGGGTGAGGTG TTCTTTGCAA 270304 383 3.68e-07 TGCGCTTTGT GTGGTGGCGGTGGGTGAGGTG TTCTTTGCAA 4040 67 8.68e-07 CGTAGAACGT GTAGATCCTGTAGGTGTGGTA CGTTTTTCTA 3776 138 9.75e-07 TTGTTGAAAT GCTGTTGTTGTTGAGATTGTG AGGAGAGCGG 21517 126 1.53e-06 TGCAGTCGTA ATTGCTGCTGTTGTTGTGTTG ATCTCATCGT 32321 53 1.71e-06 AGAAGGAGGG GAGGGTGGTGTCCGTGTCGAG GCCGTTGTTG 270230 96 1.71e-06 AGAAGGAGGG GAGGGTGGTGTCCGTGTCGAG GCCGTTGTTG 21175 286 1.71e-06 GTGCATATTG GATTGTGATTTTGTGGTGTTG GGAGACGATG 4748 104 2.90e-06 CAATGCTGCT GATGATGATGTTTCTAACAAG GTATCAACAG 4439 143 2.90e-06 CAGTGCGAAG GAAGTTGATGTTGATGGCGAT GCGACTAGCA 38924 455 2.90e-06 CCAAAGGTTA GTGTTTGCTGTTGTTGGAGGA GGATTGTCAC 262279 103 2.90e-06 CAATGCTGCT GATGATGATGTTTCTAACAAG GTATCAACAG 2770 355 3.55e-06 TTAACGATTT GAGGGTGGTGTTTAGTTGTTG CAACGTAGCT 2343 304 3.55e-06 TTCTGTGGCG GTGTTTGTTGGTGGGAGGCGA ATGATAGATA 5219 61 3.92e-06 CACAGCTGGT GTGGATGCTGCATTGGTGCTA ATCAGTACTT 31851 81 4.32e-06 TCCTGTGAGA GCACATGATGTGTATGTGAAG ATGATTGGGC 270321 80 4.32e-06 TCCTGTGAGA GCACATGATGTGTATGTGAAG ATGATTGGGC 23593 211 5.24e-06 TGATGATGAT GATGATGATGATGATGATGAA AATGGCTGAA 547 58 6.95e-06 GGATATTGCG GTTGTGGCTGCTGGGGGTGGA GATGAGGCTG 23283 248 8.35e-06 AGAGGTGCAG GAGCAGGAGGTGGATGTGTGA AGCACGTGGA 1953 96 8.35e-06 ATGACACGAC GTTGTCGTTGGTGGTGGTGAA TGTGAATGCC 32332 210 9.13e-06 CTACGTCTCA AAGGATGTTGGCGTGAAGAAG ATGTGGACAA 270308 211 9.13e-06 CTACGTCTCA AAGGATGTTGGCGTGAAGAAG ATGTGGACAA 26573 154 1.09e-05 GTGTTGCTTT GTTTGTCATGGTGGTGATGGA TCAGAGTGAA 38909 430 1.19e-05 CTTTGTCCGT TCTGTTGTTGTTGTTATGTTG AGCACACGTC 35878 434 1.19e-05 CTCCAAACGC GTACGTGTTGCGTTGAAGGTG AAAAGATTCA 270348 433 1.19e-05 CTCCAAACGC GTACGTGTTGCGTTGAAGGTG AAAAGATTCA 7677 381 1.30e-05 ATTTTGTGAC GAATGTGCTGTCTGTGACTTG AAACCGTGTG 34681 85 1.30e-05 TGGATGGAAG GATAATGTTGTTGTTGACATT GTTGGCAACG 12695 348 1.30e-05 GAGTGCGAAT GCTGGTGCTGCTGGAATGGGA GGATATCCTC 8713 172 1.97e-05 AAGGAATGGT ATAGTTGAGGGGGTGGTGCAG TCCTCTGTGC 1464 73 1.97e-05 ATCGTCTGAT GTTGTCGGTGTAGGTGACGGT GAATTTGTGG 575 450 2.31e-05 AGATATCATC GTGTATGCGTTGGTTGTTAGA TGCAGTAAAG 37198 400 2.31e-05 CTTCAACGAT GTGCTACTTGTTGTTGTGTGA TGCACTGATA 38085 202 2.70e-05 TTTCAACAGT GTTCCTCCTGTTGGGTTGAAG CAGGTTGCCA 12152 22 4.25e-05 AATGTTCAAT GTGTGTGTTTTTGTGTGTGGG AGAATGTAGG 5928 111 4.57e-05 AATGGAGCAA GAGAAGGATGTATGTATGTTG CTATCTATAT 258111 103 6.06e-05 GAGCAGGTGT GATCATGGGTTAGGGATGCAA CAATGTGATT 5434 237 6.96e-05 AAATCAATTC AAACTGGGTGTTGCTGACAAG TAGTAGAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 263427 3.9e-09 41_[+1]_438 262753 3.9e-09 44_[+1]_435 32201 1.8e-08 1_[+1]_478 270340 1.8e-08 [+1]_479 10879 2.2e-08 134_[+1]_345 36235 5.8e-08 1_[+1]_478 270336 5.8e-08 2_[+1]_477 6413 1.2e-07 207_[+1]_272 35712 3.7e-07 91_[+1]_388 270304 3.7e-07 382_[+1]_97 4040 8.7e-07 66_[+1]_413 3776 9.8e-07 137_[+1]_342 21517 1.5e-06 125_[+1]_354 32321 1.7e-06 52_[+1]_427 270230 1.7e-06 95_[+1]_384 21175 1.7e-06 285_[+1]_194 4748 2.9e-06 103_[+1]_376 4439 2.9e-06 142_[+1]_337 38924 2.9e-06 454_[+1]_25 262279 2.9e-06 102_[+1]_377 2770 3.5e-06 354_[+1]_125 2343 3.5e-06 303_[+1]_176 5219 3.9e-06 60_[+1]_419 31851 4.3e-06 80_[+1]_399 270321 4.3e-06 79_[+1]_400 23593 5.2e-06 210_[+1]_269 547 7e-06 57_[+1]_422 23283 8.3e-06 247_[+1]_232 1953 8.3e-06 95_[+1]_384 32332 9.1e-06 209_[+1]_270 270308 9.1e-06 210_[+1]_269 26573 1.1e-05 153_[+1]_326 38909 1.2e-05 429_[+1]_50 35878 1.2e-05 433_[+1]_46 270348 1.2e-05 432_[+1]_47 7677 1.3e-05 380_[+1]_99 34681 1.3e-05 84_[+1]_395 12695 1.3e-05 347_[+1]_132 8713 2e-05 171_[+1]_308 1464 2e-05 72_[+1]_407 575 2.3e-05 449_[+1]_30 37198 2.3e-05 399_[+1]_80 38085 2.7e-05 201_[+1]_278 12152 4.2e-05 21_[+1]_458 5928 4.6e-05 110_[+1]_369 258111 6.1e-05 102_[+1]_377 5434 7e-05 236_[+1]_243 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=47 263427 ( 42) GAGGTTGCTGTTGTGGAGAGA 1 262753 ( 45) GAAGATGGTGTTGATGTGGAG 1 32201 ( 2) GTGTGTGATGTTGTGATGGGA 1 270340 ( 1) GTGTGTGATGTTGTGATGGGA 1 10879 ( 135) GAGGTTGTTGTTGATATGCAG 1 36235 ( 2) GTGGATGGGGTTGGTGAGCAA 1 270336 ( 3) GTGGATGGGGTTGGTGAGCAA 1 6413 ( 208) GTTGGCGTTGTTGTTGTGAGA 1 35712 ( 92) GTGGTGGCGGTGGGTGAGGTG 1 270304 ( 383) GTGGTGGCGGTGGGTGAGGTG 1 4040 ( 67) GTAGATCCTGTAGGTGTGGTA 1 3776 ( 138) GCTGTTGTTGTTGAGATTGTG 1 21517 ( 126) ATTGCTGCTGTTGTTGTGTTG 1 32321 ( 53) GAGGGTGGTGTCCGTGTCGAG 1 270230 ( 96) GAGGGTGGTGTCCGTGTCGAG 1 21175 ( 286) GATTGTGATTTTGTGGTGTTG 1 4748 ( 104) GATGATGATGTTTCTAACAAG 1 4439 ( 143) GAAGTTGATGTTGATGGCGAT 1 38924 ( 455) GTGTTTGCTGTTGTTGGAGGA 1 262279 ( 103) GATGATGATGTTTCTAACAAG 1 2770 ( 355) GAGGGTGGTGTTTAGTTGTTG 1 2343 ( 304) GTGTTTGTTGGTGGGAGGCGA 1 5219 ( 61) GTGGATGCTGCATTGGTGCTA 1 31851 ( 81) GCACATGATGTGTATGTGAAG 1 270321 ( 80) GCACATGATGTGTATGTGAAG 1 23593 ( 211) GATGATGATGATGATGATGAA 1 547 ( 58) GTTGTGGCTGCTGGGGGTGGA 1 23283 ( 248) GAGCAGGAGGTGGATGTGTGA 1 1953 ( 96) GTTGTCGTTGGTGGTGGTGAA 1 32332 ( 210) AAGGATGTTGGCGTGAAGAAG 1 270308 ( 211) AAGGATGTTGGCGTGAAGAAG 1 26573 ( 154) GTTTGTCATGGTGGTGATGGA 1 38909 ( 430) TCTGTTGTTGTTGTTATGTTG 1 35878 ( 434) GTACGTGTTGCGTTGAAGGTG 1 270348 ( 433) GTACGTGTTGCGTTGAAGGTG 1 7677 ( 381) GAATGTGCTGTCTGTGACTTG 1 34681 ( 85) GATAATGTTGTTGTTGACATT 1 12695 ( 348) GCTGGTGCTGCTGGAATGGGA 1 8713 ( 172) ATAGTTGAGGGGGTGGTGCAG 1 1464 ( 73) GTTGTCGGTGTAGGTGACGGT 1 575 ( 450) GTGTATGCGTTGGTTGTTAGA 1 37198 ( 400) GTGCTACTTGTTGTTGTGTGA 1 38085 ( 202) GTTCCTCCTGTTGGGTTGAAG 1 12152 ( 22) GTGTGTGTTTTTGTGTGTGGG 1 5928 ( 111) GAGAAGGATGTATGTATGTTG 1 258111 ( 103) GATCATGGGTTAGGGATGCAA 1 5434 ( 237) AAACTGGGTGTTGCTGACAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 32160 bayes= 9.84213 E= 2.5e-025 -131 -1220 191 -365 61 -115 -1220 87 -31 -1220 94 35 -263 -30 131 -48 45 -247 25 25 -363 -189 -86 155 -1220 -147 198 -1220 7 11 -28 5 -1220 -1220 -45 163 -1220 -1220 198 -165 -363 -115 -86 147 -131 -115 -28 115 -1220 -247 168 -33 -46 -189 64 52 -363 -1220 64 120 27 -1220 141 -207 45 -1220 -86 93 -363 -30 146 -85 -5 -66 87 -65 61 -1220 36 15 61 -1220 120 -207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 47 E= 2.5e-025 0.106383 0.000000 0.872340 0.021277 0.404255 0.106383 0.000000 0.489362 0.212766 0.000000 0.446809 0.340426 0.042553 0.191489 0.574468 0.191489 0.361702 0.042553 0.276596 0.319149 0.021277 0.063830 0.127660 0.787234 0.000000 0.085106 0.914894 0.000000 0.276596 0.255319 0.191489 0.276596 0.000000 0.000000 0.170213 0.829787 0.000000 0.000000 0.914894 0.085106 0.021277 0.106383 0.127660 0.744681 0.106383 0.106383 0.191489 0.595745 0.000000 0.042553 0.744681 0.212766 0.191489 0.063830 0.361702 0.382979 0.021277 0.000000 0.361702 0.617021 0.319149 0.000000 0.617021 0.063830 0.361702 0.000000 0.127660 0.510638 0.021277 0.191489 0.638298 0.148936 0.255319 0.148936 0.425532 0.170213 0.404255 0.000000 0.297872 0.297872 0.404255 0.000000 0.531915 0.063830 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- G[TA][GTA]G[ATG]TG[ATC]TGTT[GT][TG][TG][GA][TA]G[GA][AGT][GA] -------------------------------------------------------------------------------- Time 41.57 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 48 llr = 497 E-value = 7.4e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 11111:11123::61131352 pos.-specific C 9266475538:a9164:9314 probability G :11:1:13::::::::1:23: matrix T :72343316:6:12345:214 bits 2.1 1.9 * 1.7 * 1.5 * ** * Relative 1.3 * * ** * Entropy 1.1 * * ** * (14.9 bits) 0.8 * * * ** ** * 0.6 ** * * ***** * 0.4 **** ** ********** * 0.2 ****************** ** 0.0 --------------------- Multilevel CTCCTCCCTCTCCACCTCAAC consensus TTCTTGC A TTTA CGT sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 38085 46 4.83e-10 CCTGCCTGCT CTCCTCCGTCTCCACTTCATC CAAAGCAACG 10879 455 4.83e-10 CCTGCCTGCT CTCCTCCGTCTCCACTTCATC CAAAGCAACG 30976 131 2.13e-09 GCAACCGTCG CTCCTTCCTCTCCACCTCATT TGCAACTGTG 6413 393 3.13e-09 GCTCGTCGCG CTCTCTCCTCTCCATTTCAAC ACCTCTTTGC bd208 290 6.35e-08 CCAGCACCCT CCTCCTCCTCTCCTCCTCCAT CCACGGCTTT 38924 2 2.53e-07 A CCTCTCTTTCTCCACTTCCAA CAACGAACAA 31851 239 5.40e-07 TTTGTTATCA CTCACCCGTAACCACATCGAC TGCTTTGTCA 270321 238 5.40e-07 TTTGTTATCA CTCACCCGTAACCACATCGAC TGCTTTGTCA 25892 218 6.87e-07 GTGGCGTCTA CCATCCTCTCTCCTCCTCAAA TTAATTAGGT 270306 439 8.69e-07 ACCGTCGGCG CCCCTCTCTCTCCTTTCCCAT TGTTCCTTTC 36235 315 1.23e-06 CTTCGAGCGC CCTCCCCTCAACCACTTCCAC GCTTTTTGGC 270336 316 1.23e-06 CTTCGAGCGC CCTCCCCTCAACCACTTCCAC GCTTTTTGGC 24512 405 1.37e-06 CAACACGCAC CTCCTCTGCCTCCACCGAGTT GAATCCAAGC 1637 346 1.37e-06 TAGCACACAA CCCTGTCGCCTCCTCCACCAC AACGAGGCAT 32924 12 1.71e-06 CTGCTCTCTT CTCTGCGCTCACCATCTCTTC GGCTAGTGCC 575 92 1.91e-06 GACAGCAACA CTCCTCACTCTCTCTTTCAAT TCGTCAATAC 258111 463 1.91e-06 GACAGCAACA CTCCTCACTCTCTCTTTCAAT TCGTCAATAC 32332 449 2.13e-06 TACTTTCTCT CTCTGCCGTCGCCACAACGAT AACTCCACAC 270308 450 2.13e-06 TACTTTCTCT CTCTGCCGTCGCCACAACGAT AACTCCACAC 547 435 2.63e-06 TCTCACAGCT CTCTCCTAACACCAACTCCAT CATCATATAG 35712 151 4.40e-06 GTTCCCTCCA CGCCTCTCTCTCCAACAAAGA AGCTCTCACA 270304 442 4.40e-06 GTTCCCTCCA CGCCTCTCTCTCCAACAAAGA AGCTCTCACA 5219 401 4.86e-06 GTTTTGTCAT CTGCCTCGTCACCTTCACTCT TCAATGACTT 23283 64 4.86e-06 CTACTAGTGG CTGCACCGCCACCACTGCTGA CACGAGATCT 1953 414 5.37e-06 CTTCAACATA CGTCACCGCCACCACCTCTCT TCCCCTCGGG 23918 470 7.18e-06 ACTCGATACA CCCCCTTCCCACCTCATACAT CAATAGCAAA 5928 471 7.89e-06 CAACAACGTC ATCCTCTCAATCCAACACAAC ACGACCACG 5434 361 8.67e-06 TAAAAGCGGA CTTTTTTCTCTCTTTTTCGGC GAAATTCGAC 40156 391 8.67e-06 GTGTTCTTTG CTACCCCCTCTCCCGCTCTCT CTCCCAACGC 26573 444 9.52e-06 TACAACGCAC CTCCCCCCTCTCCATGGTAGT CACCGACCCC 34681 451 1.50e-05 CACTTATCGC CTCTCTCCTCTCCGCAAACAA CGGATCTTTC 12152 284 1.50e-05 GAAGGCTTCC ATCCTCCATCACCGACACTAC TGTACATGCC 262753 410 1.63e-05 CGCAGCCCTT CGCCTTCGCCTCCTTCGACAC TGAATCATCG 32321 465 1.78e-05 CGCCTCCTTC CTTCCTTACATCCAATACAGT ACCTTCCCAT 10234 154 2.12e-05 ATACTTCTTC AACCCCGTTCTCCACTTCTCC CACAAACAGA 3776 399 2.51e-05 GATACACTGA CTCATTCCTCTTCATCGCCTC GACCCCACGC 21175 95 2.51e-05 AGGAAGCACT CTTTCCTCTCACAATATCTGC AAGGCGAATC 2343 266 2.73e-05 TGTGAGTTCT CAGTTCGCCCTCCTCTTCGGT GGCACTATTC 21748 462 2.73e-05 CTCGATCGAT ATCCTGCATATCCACCACTCC ATTCCTCCAA 8713 228 2.96e-05 AGAGGATGCG ATACTCTCTCTCTCTCTCCGT TGGTGTTGGA 4914 65 3.21e-05 CCAATCCTTG CAATGCCTTCTCCTCCTCGAA TATCGTTTCA 38909 72 3.21e-05 CCTGCCACAG CCGCAGCCTCACCACTACGCT ACAGACGCTA 31383 265 4.08e-05 ATCTTTGACC CTTCCCTCCAATCATCTCACA ATCTTGATCA 270230 9 4.08e-05 AACGTACC CTTTGCCGTACCCACTGCAAA TCCAGAAGGA 264865 301 4.42e-05 CTAGCAATCG CTGCTACCCCTCTTCTGCTGC AAACAGTACC 7881 470 6.48e-05 AGATTCATAC CTCACATACCACTACTACAAC ACCCATCACC 12695 64 6.98e-05 TTGCCACCGG CTCTTCAGCCTCCCAGTCCGA TTCATGCACT 21517 357 1.42e-04 TTGACTCGTA ATCCATTAACTCCACTCCAGC TTAAAAGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 38085 4.8e-10 45_[+2]_434 10879 4.8e-10 454_[+2]_25 30976 2.1e-09 130_[+2]_349 6413 3.1e-09 392_[+2]_87 bd208 6.4e-08 289_[+2]_190 38924 2.5e-07 1_[+2]_478 31851 5.4e-07 238_[+2]_241 270321 5.4e-07 237_[+2]_242 25892 6.9e-07 217_[+2]_262 270306 8.7e-07 438_[+2]_41 36235 1.2e-06 314_[+2]_165 270336 1.2e-06 315_[+2]_164 24512 1.4e-06 404_[+2]_75 1637 1.4e-06 345_[+2]_134 32924 1.7e-06 11_[+2]_468 575 1.9e-06 91_[+2]_388 258111 1.9e-06 462_[+2]_17 32332 2.1e-06 448_[+2]_31 270308 2.1e-06 449_[+2]_30 547 2.6e-06 434_[+2]_45 35712 4.4e-06 150_[+2]_329 270304 4.4e-06 441_[+2]_38 5219 4.9e-06 400_[+2]_79 23283 4.9e-06 63_[+2]_416 1953 5.4e-06 413_[+2]_66 23918 7.2e-06 469_[+2]_10 5928 7.9e-06 470_[+2]_9 5434 8.7e-06 360_[+2]_119 40156 8.7e-06 390_[+2]_89 26573 9.5e-06 443_[+2]_36 34681 1.5e-05 450_[+2]_29 12152 1.5e-05 283_[+2]_196 262753 1.6e-05 409_[+2]_70 32321 1.8e-05 464_[+2]_15 10234 2.1e-05 153_[+2]_326 3776 2.5e-05 398_[+2]_81 21175 2.5e-05 94_[+2]_385 2343 2.7e-05 265_[+2]_214 21748 2.7e-05 461_[+2]_18 8713 3e-05 227_[+2]_252 4914 3.2e-05 64_[+2]_415 38909 3.2e-05 71_[+2]_408 31383 4.1e-05 264_[+2]_215 270230 4.1e-05 8_[+2]_471 264865 4.4e-05 300_[+2]_179 7881 6.5e-05 469_[+2]_10 12695 7e-05 63_[+2]_416 21517 0.00014 356_[+2]_123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=48 38085 ( 46) CTCCTCCGTCTCCACTTCATC 1 10879 ( 455) CTCCTCCGTCTCCACTTCATC 1 30976 ( 131) CTCCTTCCTCTCCACCTCATT 1 6413 ( 393) CTCTCTCCTCTCCATTTCAAC 1 bd208 ( 290) CCTCCTCCTCTCCTCCTCCAT 1 38924 ( 2) CCTCTCTTTCTCCACTTCCAA 1 31851 ( 239) CTCACCCGTAACCACATCGAC 1 270321 ( 238) CTCACCCGTAACCACATCGAC 1 25892 ( 218) CCATCCTCTCTCCTCCTCAAA 1 270306 ( 439) CCCCTCTCTCTCCTTTCCCAT 1 36235 ( 315) CCTCCCCTCAACCACTTCCAC 1 270336 ( 316) CCTCCCCTCAACCACTTCCAC 1 24512 ( 405) CTCCTCTGCCTCCACCGAGTT 1 1637 ( 346) CCCTGTCGCCTCCTCCACCAC 1 32924 ( 12) CTCTGCGCTCACCATCTCTTC 1 575 ( 92) CTCCTCACTCTCTCTTTCAAT 1 258111 ( 463) CTCCTCACTCTCTCTTTCAAT 1 32332 ( 449) CTCTGCCGTCGCCACAACGAT 1 270308 ( 450) CTCTGCCGTCGCCACAACGAT 1 547 ( 435) CTCTCCTAACACCAACTCCAT 1 35712 ( 151) CGCCTCTCTCTCCAACAAAGA 1 270304 ( 442) CGCCTCTCTCTCCAACAAAGA 1 5219 ( 401) CTGCCTCGTCACCTTCACTCT 1 23283 ( 64) CTGCACCGCCACCACTGCTGA 1 1953 ( 414) CGTCACCGCCACCACCTCTCT 1 23918 ( 470) CCCCCTTCCCACCTCATACAT 1 5928 ( 471) ATCCTCTCAATCCAACACAAC 1 5434 ( 361) CTTTTTTCTCTCTTTTTCGGC 1 40156 ( 391) CTACCCCCTCTCCCGCTCTCT 1 26573 ( 444) CTCCCCCCTCTCCATGGTAGT 1 34681 ( 451) CTCTCTCCTCTCCGCAAACAA 1 12152 ( 284) ATCCTCCATCACCGACACTAC 1 262753 ( 410) CGCCTTCGCCTCCTTCGACAC 1 32321 ( 465) CTTCCTTACATCCAATACAGT 1 10234 ( 154) AACCCCGTTCTCCACTTCTCC 1 3776 ( 399) CTCATTCCTCTTCATCGCCTC 1 21175 ( 95) CTTTCCTCTCACAATATCTGC 1 2343 ( 266) CAGTTCGCCCTCCTCTTCGGT 1 21748 ( 462) ATCCTGCATATCCACCACTCC 1 8713 ( 228) ATACTCTCTCTCTCTCTCCGT 1 4914 ( 65) CAATGCCTTCTCCTCCTCGAA 1 38909 ( 72) CCGCAGCCTCACCACTACGCT 1 31383 ( 265) CTTCCCTCCAATCATCTCACA 1 270230 ( 9) CTTTGCCGTACCCACTGCAAA 1 264865 ( 301) CTGCTACCCCTCTTCTGCTGC 1 7881 ( 470) CTCACATACCACTACTACAAC 1 12695 ( 64) CTCTTCAGCCTCCCAGTCCGA 1 21517 ( 357) ATCCATTAACTCCACTCCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 32160 bayes= 9.8339 E= 7.4e-021 -108 189 -1223 -1223 -208 -33 -148 131 -166 136 -116 -36 -166 140 -1223 12 -166 67 -89 64 -266 150 -248 -10 -208 120 -189 32 -108 102 33 -136 -208 31 -1223 127 -49 178 -1223 -1223 24 -350 -248 122 -1223 202 -1223 -268 -366 186 -1223 -110 124 -118 -248 -23 -86 125 -347 2 -86 82 -248 56 4 -250 -67 102 -108 186 -1223 -368 34 20 -31 -36 86 -69 11 -110 -34 82 -1223 48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 48 E= 7.4e-021 0.125000 0.875000 0.000000 0.000000 0.062500 0.187500 0.083333 0.666667 0.083333 0.604167 0.104167 0.208333 0.083333 0.625000 0.000000 0.291667 0.083333 0.375000 0.125000 0.416667 0.041667 0.666667 0.041667 0.250000 0.062500 0.541667 0.062500 0.333333 0.125000 0.479167 0.291667 0.104167 0.062500 0.291667 0.000000 0.645833 0.187500 0.812500 0.000000 0.000000 0.312500 0.020833 0.041667 0.625000 0.000000 0.958333 0.000000 0.041667 0.020833 0.854167 0.000000 0.125000 0.625000 0.104167 0.041667 0.229167 0.145833 0.562500 0.020833 0.270833 0.145833 0.416667 0.041667 0.395833 0.270833 0.041667 0.145833 0.541667 0.125000 0.854167 0.000000 0.020833 0.333333 0.270833 0.187500 0.208333 0.479167 0.145833 0.250000 0.125000 0.208333 0.416667 0.000000 0.375000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- CT[CT][CT][TC][CT][CT][CG][TC]C[TA]CC[AT][CT][CT][TA]C[ACT][AG][CTA] -------------------------------------------------------------------------------- Time 80.44 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 41 llr = 430 E-value = 1.1e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 52:3:7719:67474652148 pos.-specific C 33217124:a216134:7642 probability G :27:3::1::11::2:1::2: matrix T 23:5:1:4::1::21:4131: bits 2.1 1.9 * 1.7 * 1.5 ** Relative 1.3 ** Entropy 1.1 * ** * * (15.1 bits) 0.8 * * * ** ** * * * 0.6 * *** ** *** **** * 0.4 * ***** ****** **** * 0.2 * ******************* 0.0 --------------------- Multilevel ATGTCAACACAACAAAACCCA consensus CCCAG CT ATCCTATA sequence TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 1953 274 7.07e-10 GAGGGAGGAG CTGACAACACAACAACTCCGA TACCTCACCA 32321 423 2.11e-08 TGCCCGTCCG ACCTCAAGACAACACAACTCA CAGCAACACA 270230 466 2.11e-08 TGCCCGTCCG ACCTCAAGACAACACAACTCA CAGCAACACA 10234 421 2.31e-07 CAATTTTATT CAGTGAACACCACACATCCAC TTTCATAGCC 36235 77 3.01e-07 ACCAAAGCGT TTGCGAACACGACAAATCCGA TCCATCATCA 270336 78 3.01e-07 ACCAAAGCGT TTGCGAACACGACAAATCCGA TCCATCATCA 35878 476 5.65e-07 CACGGCGGCC CGGACAACACTACTTAACCAA CAAG 270348 475 5.65e-07 CACGGCGGCC CGGACAACACTACTTAACCAA CAAGA 258111 15 5.65e-07 ATGACGACTG ATGACTATACAAAAGCTCTGA AAGTCCTGGG bd208 208 9.09e-07 GACCATCTCG CCGCCACCACCGCACATCCAA AGAACCCACA 4748 475 1.02e-06 CCGCCGACGG ACGACAATAAAACACAATCCA ATAAC 262279 474 1.02e-06 CCGCCGACGG ACGACAATAAAACACAATCCA ATAACA 34681 479 1.14e-06 CAACGGATCT TTCTCACAACAACAACGCCAA C 32201 351 1.28e-06 CGAACGAAGA ACCTGAACACAGAAGATCTCA CTTTTGGAGG 270340 350 1.28e-06 CGAACGAAGA ACCTGAACACAGAAGATCTCA CTTTTGGAGG 21748 275 1.43e-06 TTAAGAGATT AGTACAATACCACAAAGCCAA AGTGGCTCGT 25892 370 1.78e-06 ATCAAGCTGC CTGTCACCACGCAAAAAATCA CGTGGTCGCG 40156 288 2.45e-06 AATCAGCACT CTGTCACTACTCAACCTCCCC AGATATTTCC 21175 405 4.08e-06 CATTGAATAG GCGACGATACAACAAATACCA AAAACATCGC 32332 411 4.51e-06 GGCCGCGCGT ACGTCAGCACCACAACTCTCG TTTTCTCTAC 270308 412 4.51e-06 GGCCGCGCGT ACGTCAGCACCACAACTCTCG TTTTCTCTAC 38909 241 6.02e-06 TCTTATCATC ATCATCATACAACAACAACAA CTCTGCGTAG 37198 11 7.26e-06 TTTTCAAAGC AGCAGAAGACGACCAATCCGA ACAAACCGGA 31383 346 7.26e-06 CTGCGATGGA TAGAGTCTACAACTACAACCA ATGAACGGAT 261226 445 7.26e-06 ACCAAATCAT CTGACAACACCAATACGCCTC TACTGCACCT 24512 99 8.73e-06 CCGTCATTGC TGGTCACGACAGATCAAACAA CCAAAAATCA 7881 164 9.56e-06 CCAAAGCTAC AGCCGCACACAAATCCAACCA CACTTCTTTC 8248 466 1.05e-05 AGCTTGAAGG TTGCCGACACACAACAAACGA AGAACCTCTC 26573 411 1.14e-05 TCCAAACCGC AGCTCTCTACAACAAAGCTGC CGTACAACGC 1637 206 1.36e-05 GCCGCTACGT CAGTGAACACATCAGCACAAA CATCTGGGCC 32924 347 1.48e-05 CGTGCTATCT CTGACAATACAACCGCACATC ATGACACAAT 23283 328 1.62e-05 AGACGGGAGC ATGTCCCTACTAACAAACTCC CGGATAGTAA 31566 304 2.25e-05 TCATTGGTCA AGGTCTAAACAAAAGCGACAC CAACCATGGA 575 113 2.44e-05 CTCTTTCAAT TCGTCAATACACAAGAATGAA GTTCGCCACC 35712 191 2.65e-05 AAATTCTCTG TTGTCAACTCAATCAAACCAA ACACCATGTA 33205 469 3.36e-05 CATTGGCTGG ATCTGAAGACGAATCCTTTCA AGTGGACCCA 38924 185 4.22e-05 CGGATATCAA CGGAGCATCCACCACCAACAA CAACAACAAC 1464 462 4.55e-05 ACGCTACGCT AAGCTACAACACCTACACCCA CACCGCAAGT 4914 38 6.55e-05 GCGGGTACTC CAATCTCCCCAACAACTCCAA TCCTTGCAAT 262753 477 7.03e-05 TTCTACACAC AAGTCAATACCAATTCAATTC ACG 6413 472 8.66e-05 CAATCATCCA TATTCAATACTAACCATCAAA CTGCAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 1953 7.1e-10 273_[+3]_206 32321 2.1e-08 422_[+3]_57 270230 2.1e-08 465_[+3]_14 10234 2.3e-07 420_[+3]_59 36235 3e-07 76_[+3]_403 270336 3e-07 77_[+3]_402 35878 5.6e-07 475_[+3]_4 270348 5.6e-07 474_[+3]_5 258111 5.6e-07 14_[+3]_465 bd208 9.1e-07 207_[+3]_272 4748 1e-06 474_[+3]_5 262279 1e-06 473_[+3]_6 34681 1.1e-06 478_[+3]_1 32201 1.3e-06 350_[+3]_129 270340 1.3e-06 349_[+3]_130 21748 1.4e-06 274_[+3]_205 25892 1.8e-06 369_[+3]_110 40156 2.5e-06 287_[+3]_192 21175 4.1e-06 404_[+3]_75 32332 4.5e-06 410_[+3]_69 270308 4.5e-06 411_[+3]_68 38909 6e-06 240_[+3]_239 37198 7.3e-06 10_[+3]_469 31383 7.3e-06 345_[+3]_134 261226 7.3e-06 444_[+3]_35 24512 8.7e-06 98_[+3]_381 7881 9.6e-06 163_[+3]_316 8248 1e-05 465_[+3]_14 26573 1.1e-05 410_[+3]_69 1637 1.4e-05 205_[+3]_274 32924 1.5e-05 346_[+3]_133 23283 1.6e-05 327_[+3]_152 31566 2.3e-05 303_[+3]_176 575 2.4e-05 112_[+3]_367 35712 2.6e-05 190_[+3]_289 33205 3.4e-05 468_[+3]_11 38924 4.2e-05 184_[+3]_295 1464 4.5e-05 461_[+3]_18 4914 6.5e-05 37_[+3]_442 262753 7e-05 476_[+3]_3 6413 8.7e-05 471_[+3]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=41 1953 ( 274) CTGACAACACAACAACTCCGA 1 32321 ( 423) ACCTCAAGACAACACAACTCA 1 270230 ( 466) ACCTCAAGACAACACAACTCA 1 10234 ( 421) CAGTGAACACCACACATCCAC 1 36235 ( 77) TTGCGAACACGACAAATCCGA 1 270336 ( 78) TTGCGAACACGACAAATCCGA 1 35878 ( 476) CGGACAACACTACTTAACCAA 1 270348 ( 475) CGGACAACACTACTTAACCAA 1 258111 ( 15) ATGACTATACAAAAGCTCTGA 1 bd208 ( 208) CCGCCACCACCGCACATCCAA 1 4748 ( 475) ACGACAATAAAACACAATCCA 1 262279 ( 474) ACGACAATAAAACACAATCCA 1 34681 ( 479) TTCTCACAACAACAACGCCAA 1 32201 ( 351) ACCTGAACACAGAAGATCTCA 1 270340 ( 350) ACCTGAACACAGAAGATCTCA 1 21748 ( 275) AGTACAATACCACAAAGCCAA 1 25892 ( 370) CTGTCACCACGCAAAAAATCA 1 40156 ( 288) CTGTCACTACTCAACCTCCCC 1 21175 ( 405) GCGACGATACAACAAATACCA 1 32332 ( 411) ACGTCAGCACCACAACTCTCG 1 270308 ( 412) ACGTCAGCACCACAACTCTCG 1 38909 ( 241) ATCATCATACAACAACAACAA 1 37198 ( 11) AGCAGAAGACGACCAATCCGA 1 31383 ( 346) TAGAGTCTACAACTACAACCA 1 261226 ( 445) CTGACAACACCAATACGCCTC 1 24512 ( 99) TGGTCACGACAGATCAAACAA 1 7881 ( 164) AGCCGCACACAAATCCAACCA 1 8248 ( 466) TTGCCGACACACAACAAACGA 1 26573 ( 411) AGCTCTCTACAACAAAGCTGC 1 1637 ( 206) CAGTGAACACATCAGCACAAA 1 32924 ( 347) CTGACAATACAACCGCACATC 1 23283 ( 328) ATGTCCCTACTAACAAACTCC 1 31566 ( 304) AGGTCTAAACAAAAGCGACAC 1 575 ( 113) TCGTCAATACACAAGAATGAA 1 35712 ( 191) TTGTCAACTCAATCAAACCAA 1 33205 ( 469) ATCTGAAGACGAATCCTTTCA 1 38924 ( 185) CGGAGCATCCACCACCAACAA 1 1464 ( 462) AAGCTACAACACCTACACCCA 1 4914 ( 38) CAATCTCCCCAACAACTCCAA 1 262753 ( 477) AAGTCAATACCAATTCAATTC 1 6413 ( 472) TATTCAATACTAACCATCAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 32160 bayes= 9.89251 E= 1.1e-009 81 31 -325 -29 -63 18 -8 35 -343 5 156 -246 37 -69 -1200 93 -1200 153 21 -246 147 -127 -225 -114 142 5 -225 -1200 -185 90 -93 45 181 -227 -1200 -345 -243 201 -1200 -1200 115 -47 -93 -114 147 -69 -125 -345 47 137 -1200 -345 132 -95 -1200 -29 73 43 -44 -187 109 90 -1200 -1200 89 -1200 -93 54 -11 148 -1200 -146 -185 137 -325 13 47 73 -44 -187 152 -27 -225 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 41 E= 1.1e-009 0.463415 0.292683 0.024390 0.219512 0.170732 0.268293 0.219512 0.341463 0.024390 0.243902 0.682927 0.048780 0.341463 0.146341 0.000000 0.512195 0.000000 0.682927 0.268293 0.048780 0.731707 0.097561 0.048780 0.121951 0.707317 0.243902 0.048780 0.000000 0.073171 0.439024 0.121951 0.365854 0.926829 0.048780 0.000000 0.024390 0.048780 0.951220 0.000000 0.000000 0.585366 0.170732 0.121951 0.121951 0.731707 0.146341 0.097561 0.024390 0.365854 0.609756 0.000000 0.024390 0.658537 0.121951 0.000000 0.219512 0.439024 0.317073 0.170732 0.073171 0.560976 0.439024 0.000000 0.000000 0.487805 0.000000 0.121951 0.390244 0.243902 0.658537 0.000000 0.097561 0.073171 0.609756 0.024390 0.292683 0.365854 0.390244 0.170732 0.073171 0.756098 0.195122 0.048780 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [ACT][TCG][GC][TA][CG]A[AC][CT]ACAA[CA][AT][AC][AC][AT][CA][CT][CA]A -------------------------------------------------------------------------------- Time 118.70 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10234 3.72e-05 153_[+2(2.12e-05)]_246_\ [+3(2.31e-07)]_36_[+3(4.22e-05)]_2 10879 2.08e-10 134_[+1(2.17e-08)]_299_\ [+2(4.83e-10)]_25 12152 1.77e-03 21_[+1(4.25e-05)]_241_\ [+2(1.50e-05)]_196 12695 9.13e-03 63_[+2(6.98e-05)]_263_\ [+1(1.30e-05)]_132 1464 3.56e-03 72_[+1(1.97e-05)]_368_\ [+3(4.55e-05)]_18 1637 1.54e-04 205_[+3(1.36e-05)]_119_\ [+2(1.37e-06)]_29_[+2(4.86e-06)]_84 1953 1.31e-09 95_[+1(8.35e-06)]_157_\ [+3(7.07e-10)]_119_[+2(5.37e-06)]_33_[+2(8.09e-05)]_12 21175 3.39e-06 94_[+2(2.51e-05)]_170_\ [+1(1.71e-06)]_98_[+3(4.08e-06)]_75 21517 1.56e-03 125_[+1(1.53e-06)]_354 21748 5.36e-04 274_[+3(1.43e-06)]_166_\ [+2(2.73e-05)]_18 23283 1.10e-05 63_[+2(4.86e-06)]_163_\ [+1(8.35e-06)]_59_[+3(1.62e-05)]_152 2343 2.94e-04 265_[+2(2.73e-05)]_17_\ [+1(3.55e-06)]_176 23593 3.15e-02 210_[+1(5.24e-06)]_269 23918 8.37e-03 469_[+2(7.18e-06)]_10 24512 1.68e-04 98_[+3(8.73e-06)]_285_\ [+2(1.37e-06)]_42_[+3(5.67e-05)]_12 258111 1.40e-06 14_[+3(5.65e-07)]_67_[+1(6.06e-05)]_\ 339_[+2(1.91e-06)]_17 25892 3.11e-05 217_[+2(6.87e-07)]_24_\ [+2(4.86e-06)]_86_[+3(1.78e-06)]_110 261226 2.04e-02 444_[+3(7.26e-06)]_35 262279 7.32e-05 102_[+1(2.90e-06)]_350_\ [+3(1.02e-06)]_6 262753 1.22e-07 44_[+1(3.88e-09)]_86_[+1(2.61e-06)]_\ 237_[+2(1.63e-05)]_46_[+3(7.03e-05)]_3 263427 1.70e-04 41_[+1(3.88e-09)]_403_\ [+1(1.30e-05)]_14 264865 5.72e-02 300_[+2(4.42e-05)]_179 26573 1.86e-05 153_[+1(1.09e-05)]_236_\ [+3(1.14e-05)]_12_[+2(9.52e-06)]_36 270230 4.49e-08 8_[+2(4.08e-05)]_66_[+1(1.71e-06)]_\ 37_[+1(2.92e-05)]_291_[+3(2.11e-08)]_14 270304 5.10e-06 382_[+1(3.68e-07)]_38_\ [+2(4.40e-06)]_38 270306 1.21e-03 438_[+2(8.69e-07)]_41 270308 1.83e-06 210_[+1(9.13e-06)]_180_\ [+3(4.51e-06)]_17_[+2(2.13e-06)]_30 270321 5.80e-05 79_[+1(4.32e-06)]_137_\ [+2(5.40e-07)]_242 270336 9.22e-10 2_[+1(5.84e-08)]_54_[+3(3.01e-07)]_\ 217_[+2(1.23e-06)]_164 270340 6.59e-07 [+1(1.82e-08)]_328_[+3(1.28e-06)]_\ 130 270348 1.16e-04 432_[+1(1.19e-05)]_21_\ [+3(5.65e-07)]_5 2770 1.34e-02 142_[+1(5.66e-05)]_191_\ [+1(3.55e-06)]_125 30976 6.13e-05 130_[+2(2.13e-09)]_349 31383 1.59e-03 264_[+2(4.08e-05)]_60_\ [+3(7.26e-06)]_134 31566 6.87e-02 303_[+3(2.25e-05)]_176 31851 5.80e-05 80_[+1(4.32e-06)]_137_\ [+2(5.40e-07)]_241 32201 6.59e-07 1_[+1(1.82e-08)]_328_[+3(1.28e-06)]_\ 129 32321 2.11e-08 52_[+1(1.71e-06)]_37_[+1(2.92e-05)]_\ 291_[+3(2.11e-08)]_21_[+2(1.78e-05)]_15 32332 1.83e-06 209_[+1(9.13e-06)]_180_\ [+3(4.51e-06)]_17_[+2(2.13e-06)]_31 32924 3.37e-04 11_[+2(1.71e-06)]_314_\ [+3(1.48e-05)]_133 33205 1.44e-01 468_[+3(3.36e-05)]_11 34681 4.20e-06 84_[+1(1.30e-05)]_345_\ [+2(1.50e-05)]_7_[+3(1.14e-06)]_1 35712 9.61e-07 91_[+1(3.68e-07)]_38_[+2(4.40e-06)]_\ 19_[+3(2.65e-05)]_222_[+2(4.78e-05)]_46 35878 1.16e-04 433_[+1(1.19e-05)]_21_\ [+3(5.65e-07)]_4 36235 9.22e-10 1_[+1(5.84e-08)]_54_[+3(3.01e-07)]_\ 217_[+2(1.23e-06)]_165 37198 1.98e-03 10_[+3(7.26e-06)]_368_\ [+1(2.31e-05)]_80 3776 2.07e-04 40_[+1(3.92e-06)]_76_[+1(9.75e-07)]_\ 240_[+2(2.51e-05)]_81 38085 2.52e-07 45_[+2(4.83e-10)]_135_\ [+1(2.70e-05)]_278 38909 3.31e-05 71_[+2(3.21e-05)]_148_\ [+3(6.02e-06)]_168_[+1(1.19e-05)]_50 38924 7.14e-07 1_[+2(2.53e-07)]_162_[+3(4.22e-05)]_\ 249_[+1(2.90e-06)]_25 40156 1.34e-04 287_[+3(2.45e-06)]_82_\ [+2(8.67e-06)]_89 4040 4.92e-03 66_[+1(8.68e-07)]_413 4439 1.03e-02 142_[+1(2.90e-06)]_337 4748 7.32e-05 103_[+1(2.90e-06)]_350_\ [+3(1.02e-06)]_5 4914 6.52e-03 37_[+3(6.55e-05)]_6_[+2(3.21e-05)]_\ 415 5219 1.89e-04 60_[+1(3.92e-06)]_319_\ [+2(4.86e-06)]_79 5434 4.29e-03 236_[+1(6.96e-05)]_103_\ [+2(8.67e-06)]_119 547 8.39e-05 57_[+1(6.95e-06)]_356_\ [+2(2.63e-06)]_45 575 1.70e-05 91_[+2(1.91e-06)]_[+3(2.44e-05)]_\ 316_[+1(2.31e-05)]_30 5928 1.30e-04 110_[+1(4.57e-05)]_339_\ [+2(7.89e-06)]_9 6413 1.36e-09 207_[+1(1.24e-07)]_164_\ [+2(3.13e-09)]_58_[+3(8.66e-05)]_8 7155 2.92e-01 500 7677 4.34e-02 380_[+1(1.30e-05)]_99 7881 3.57e-03 163_[+3(9.56e-06)]_290_\ [+3(4.51e-06)]_5 8248 5.07e-02 465_[+3(1.05e-05)]_14 8713 2.70e-03 171_[+1(1.97e-05)]_35_\ [+2(2.96e-05)]_252 bd208 1.61e-06 207_[+3(9.09e-07)]_61_\ [+2(6.35e-08)]_78_[+2(5.16e-05)]_21_[+2(3.77e-05)]_49 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************