******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/153/153.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10753 1.0000 500 1684 1.0000 500 20988 1.0000 500 21326 1.0000 500 24100 1.0000 500 24267 1.0000 500 24592 1.0000 500 25318 1.0000 500 25388 1.0000 500 261567 1.0000 500 262619 1.0000 500 263347 1.0000 500 270000 1.0000 500 33984 1.0000 500 3660 1.0000 500 39726 1.0000 500 6167 1.0000 500 6442 1.0000 500 7627 1.0000 500 7868 1.0000 500 9506 1.0000 500 9649 1.0000 500 bd392 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/153/153.seqs.fa -oc motifs/153 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 23 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 11500 N= 23 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.276 C 0.221 G 0.237 T 0.266 Background letter frequencies (from dataset with add-one prior applied): A 0.276 C 0.221 G 0.237 T 0.266 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 16 sites = 23 llr = 226 E-value = 2.1e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 35393132:44:45:4 pos.-specific C 637:29:3a2195:a1 probability G :1::::61:::11::: matrix T 21:14:13:34::5:4 bits 2.2 * * 2.0 * * 1.7 * * 1.5 * * * * Relative 1.3 * * * * * Entropy 1.1 ** * * * * (14.2 bits) 0.9 ** * * * ** 0.7 * ** ** * **** 0.4 **** ** * **** 0.2 ******* ******** 0.0 ---------------- Multilevel CACATCGCCAACCACA consensus ACA A AT TT AT T sequence C A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 9649 242 4.37e-08 CCAAAAAAGA CACAACGACAACCACA GGAACAAACT 10753 242 4.37e-08 CCAAAAAAGA CACAACGACAACCACA GGAACAAACT 24592 483 1.05e-07 CAGTATCCGC ACCATCGCCTACCACA GC 24267 462 1.87e-07 TCTGAATGAG CACATCGGCCACCACT AAATCACACC 270000 103 3.79e-07 TCAACCTTGT CACATCACCAACCTCC CACCCCCCGA 9506 485 2.08e-06 ATGCACTACT CCCATAGCCATCAACA 21326 481 4.21e-06 TCCACGTGCA CCCACCCCCTTCCACT TATC 20988 325 4.21e-06 TGCGTCCTCC CACTTCGGCCTCCTCT AGCGCAGTGG 6442 103 5.81e-06 GTTAGCGTTA TACATCGCCCTGCTCA TGCTGCAAGT 7627 475 7.13e-06 CGAACTAAAT CAAACAGTCAACCACA ACACGTGAAC 25318 78 9.59e-06 GCCTTTAGGG CAAAACAACAACAACC TTTCTTGATT 7868 7 1.16e-05 ACTGGA ACAATCATCCTCATCT GTCAATAATG 6167 456 1.52e-05 AACACAAAAA CAAAACGACACCGTCT CCTGTCCTCC 262619 471 1.97e-05 CGAACGACGA CGCAGCGTCCACAACA ACACAGATAA 24100 37 1.97e-05 CTGGAAGAGT TTCATCTCCATCCTCA TCATAATACT 33984 285 2.74e-05 CATTTTGATG AGAAACGACTTCAACT TATTGCTTGG 25388 198 2.96e-05 AAGAGCAAAT TACACCATCGACCTCT AGATTATGAT 1684 400 2.96e-05 AAATTCCATC ACAATCACCAGCAACA CGAACCTGCC bd392 218 3.45e-05 GTGTATTCAT ACAAACGTCTACATCG AATATCTTTG 3660 142 3.45e-05 TTCTCGCGGT ACCATTGCCACCAACT CTCAATATTA 261567 63 1.13e-04 CTTGAAGAGG CTCTACGTCTCCGTCA GTCGCTATTA 263347 174 1.34e-04 AAATGAGAGA TCAACCTTCTTGCTCT GAAGACTCCA 39726 481 2.01e-04 TTTCACCCTT CACTCCAGCTTGATCC CCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 9649 4.4e-08 241_[+1]_243 10753 4.4e-08 241_[+1]_243 24592 1e-07 482_[+1]_2 24267 1.9e-07 461_[+1]_23 270000 3.8e-07 102_[+1]_382 9506 2.1e-06 484_[+1] 21326 4.2e-06 480_[+1]_4 20988 4.2e-06 324_[+1]_160 6442 5.8e-06 102_[+1]_382 7627 7.1e-06 474_[+1]_10 25318 9.6e-06 77_[+1]_407 7868 1.2e-05 6_[+1]_478 6167 1.5e-05 455_[+1]_29 262619 2e-05 470_[+1]_14 24100 2e-05 36_[+1]_448 33984 2.7e-05 284_[+1]_200 25388 3e-05 197_[+1]_287 1684 3e-05 399_[+1]_85 bd392 3.5e-05 217_[+1]_267 3660 3.5e-05 141_[+1]_343 261567 0.00011 62_[+1]_422 263347 0.00013 173_[+1]_311 39726 0.0002 480_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=16 seqs=23 9649 ( 242) CACAACGACAACCACA 1 10753 ( 242) CACAACGACAACCACA 1 24592 ( 483) ACCATCGCCTACCACA 1 24267 ( 462) CACATCGGCCACCACT 1 270000 ( 103) CACATCACCAACCTCC 1 9506 ( 485) CCCATAGCCATCAACA 1 21326 ( 481) CCCACCCCCTTCCACT 1 20988 ( 325) CACTTCGGCCTCCTCT 1 6442 ( 103) TACATCGCCCTGCTCA 1 7627 ( 475) CAAACAGTCAACCACA 1 25318 ( 78) CAAAACAACAACAACC 1 7868 ( 7) ACAATCATCCTCATCT 1 6167 ( 456) CAAAACGACACCGTCT 1 262619 ( 471) CGCAGCGTCCACAACA 1 24100 ( 37) TTCATCTCCATCCTCA 1 33984 ( 285) AGAAACGACTTCAACT 1 25388 ( 198) TACACCATCGACCTCT 1 1684 ( 400) ACAATCACCAGCAACA 1 bd392 ( 218) ACAAACGTCTACATCG 1 3660 ( 142) ACCATTGCCACCAACT 1 261567 ( 63) CTCTACGTCTCCGTCA 1 263347 ( 174) TCAACCTTCTTGCTCT 1 39726 ( 481) CACTCCAGCTTGATCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 11155 bayes= 9.32214 E= 2.1e-006 -8 135 -1117 -61 79 65 -145 -161 33 156 -1117 -1117 166 -1117 -1117 -103 14 -3 -244 71 -166 197 -1117 -261 -8 -235 136 -161 -34 65 -86 20 -1117 218 -1117 -1117 66 -3 -244 20 66 -76 -244 56 -1117 197 -86 -1117 50 124 -145 -1117 92 -1117 -1117 85 -1117 218 -1117 -1117 66 -76 -244 56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 23 E= 2.1e-006 0.260870 0.565217 0.000000 0.173913 0.478261 0.347826 0.086957 0.086957 0.347826 0.652174 0.000000 0.000000 0.869565 0.000000 0.000000 0.130435 0.304348 0.217391 0.043478 0.434783 0.086957 0.869565 0.000000 0.043478 0.260870 0.043478 0.608696 0.086957 0.217391 0.347826 0.130435 0.304348 0.000000 1.000000 0.000000 0.000000 0.434783 0.217391 0.043478 0.304348 0.434783 0.130435 0.043478 0.391304 0.000000 0.869565 0.130435 0.000000 0.391304 0.521739 0.086957 0.000000 0.521739 0.000000 0.000000 0.478261 0.000000 1.000000 0.000000 0.000000 0.434783 0.130435 0.043478 0.391304 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CA][AC][CA]A[TAC]C[GA][CTA]C[ATC][AT]C[CA][AT]C[AT] -------------------------------------------------------------------------------- Time 5.54 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 17 llr = 211 E-value = 4.9e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :4:261414524:44564229 pos.-specific C :12:1:::1::::1:1:1:31 probability G a:78:844658:a2442474: matrix T :51:2135:::6:42:21111 bits 2.2 * * 2.0 * * 1.7 * * 1.5 * * Relative 1.3 * * * * * * Entropy 1.1 * * * * * * (17.9 bits) 0.9 * ** * ***** * * 0.7 ****** ****** * * * 0.4 ************* *** * * 0.2 ************* ******* 0.0 --------------------- Multilevel GTGGAGATGAGTGAAAAAGGA consensus A AT GGAGAA TGGTGAC sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 261567 167 4.77e-11 TGAAAAGGCA GTGGAGTTGGGTGAGAAAGCA CTCAAAGTGT 9649 375 7.75e-09 GTTGCCCGTC GTCGAGGGAAGTGTGAAGGCA TGTGATCATG 10753 375 7.75e-09 GTTGCCCGTC GTCGAGGGAAGTGTGAAGGCA TGTGATCATG 7627 182 3.16e-08 AGAGAAGAGA GAGGAGAGGAGAGAAGAGAGA GAAGAGAGAC 9506 158 1.86e-07 TCTAGTCGAG GAGGAGTTGGGTGAAGACATA ACCAAAAATA 263347 452 2.89e-07 TGTGGTGGCA GTGAAGATGAGAGTGAAATGA TGGTGTCTAA 25388 128 5.33e-07 GGGAGGAGCC GAGGAGGTAAATGGAATTGGA AGTGCGGTCG 3660 17 7.79e-07 GAACGGTTTC GTTGAGTTGGATGCAAAGGTA CGACGCGCAG 25318 207 1.12e-06 GCGGAGTTGT GCGGAAATGGGTGGAGTAGGA TAACTGCTCG 262619 202 1.32e-06 GGAAAGAGTG GTGGTGGAAAGAGTGAGGAGA AGGAGGGTGA bd392 336 2.00e-06 AACAAGTGAA GCGGAGGGGGGAGAGAATGAT AATGCCGATG 6167 415 2.72e-06 TTGTGACAGA GTGGTTAGAAGTGGACAAGCA CAAGCCTTTC 24100 267 2.72e-06 AGATAGTCAG GAGGCGAGCAGAGAAGTAGAA CTGTCAACAG 7868 127 3.15e-06 GTCAACGTCA GTGATGATAGATGATGACGAA CATCATTGGC 6442 184 5.86e-06 ATCTCGTGAT GAGATTGTGAGAGTTGTAGAA CGAACGACGA 24267 15 7.53e-06 CTACCAGTCC GTTGCGTTGGGTGTGAGGAGC AATATGTTCG 1684 279 1.41e-05 TCCAAGTGAA GACAAGTAGGATGCTGGAGCA CCAACAGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 261567 4.8e-11 166_[+2]_313 9649 7.7e-09 374_[+2]_105 10753 7.7e-09 374_[+2]_105 7627 3.2e-08 181_[+2]_298 9506 1.9e-07 157_[+2]_322 263347 2.9e-07 451_[+2]_28 25388 5.3e-07 127_[+2]_352 3660 7.8e-07 16_[+2]_463 25318 1.1e-06 206_[+2]_273 262619 1.3e-06 201_[+2]_278 bd392 2e-06 335_[+2]_144 6167 2.7e-06 414_[+2]_65 24100 2.7e-06 266_[+2]_213 7868 3.2e-06 126_[+2]_353 6442 5.9e-06 183_[+2]_296 24267 7.5e-06 14_[+2]_465 1684 1.4e-05 278_[+2]_201 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=17 261567 ( 167) GTGGAGTTGGGTGAGAAAGCA 1 9649 ( 375) GTCGAGGGAAGTGTGAAGGCA 1 10753 ( 375) GTCGAGGGAAGTGTGAAGGCA 1 7627 ( 182) GAGGAGAGGAGAGAAGAGAGA 1 9506 ( 158) GAGGAGTTGGGTGAAGACATA 1 263347 ( 452) GTGAAGATGAGAGTGAAATGA 1 25388 ( 128) GAGGAGGTAAATGGAATTGGA 1 3660 ( 17) GTTGAGTTGGATGCAAAGGTA 1 25318 ( 207) GCGGAAATGGGTGGAGTAGGA 1 262619 ( 202) GTGGTGGAAAGAGTGAGGAGA 1 bd392 ( 336) GCGGAGGGGGGAGAGAATGAT 1 6167 ( 415) GTGGTTAGAAGTGGACAAGCA 1 24100 ( 267) GAGGCGAGCAGAGAAGTAGAA 1 7868 ( 127) GTGATGATAGATGATGACGAA 1 6442 ( 184) GAGATTGTGAGAGTTGTAGAA 1 24267 ( 15) GTTGCGTTGGGTGTGAGGAGC 1 1684 ( 279) GACAAGTAGGATGCTGGAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 11040 bayes= 10.1364 E= 4.9e-003 -1073 -1073 208 -1073 35 -91 -1073 99 -1073 -33 157 -117 -23 -1073 169 -1073 123 -91 -1073 -17 -223 -1073 180 -117 35 -1073 57 15 -123 -1073 57 99 35 -191 131 -1073 94 -1073 99 -1073 -23 -1073 169 -1073 35 -1073 -1073 128 -1073 -1073 208 -1073 35 -91 -43 41 58 -1073 80 -59 94 -191 80 -1073 109 -1073 -43 -17 58 -91 57 -117 -23 -1073 157 -217 -23 41 57 -117 168 -191 -1073 -217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 17 E= 4.9e-003 0.000000 0.000000 1.000000 0.000000 0.352941 0.117647 0.000000 0.529412 0.000000 0.176471 0.705882 0.117647 0.235294 0.000000 0.764706 0.000000 0.647059 0.117647 0.000000 0.235294 0.058824 0.000000 0.823529 0.117647 0.352941 0.000000 0.352941 0.294118 0.117647 0.000000 0.352941 0.529412 0.352941 0.058824 0.588235 0.000000 0.529412 0.000000 0.470588 0.000000 0.235294 0.000000 0.764706 0.000000 0.352941 0.000000 0.000000 0.647059 0.000000 0.000000 1.000000 0.000000 0.352941 0.117647 0.176471 0.352941 0.411765 0.000000 0.411765 0.176471 0.529412 0.058824 0.411765 0.000000 0.588235 0.000000 0.176471 0.235294 0.411765 0.117647 0.352941 0.117647 0.235294 0.000000 0.705882 0.058824 0.235294 0.294118 0.352941 0.117647 0.882353 0.058824 0.000000 0.058824 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- G[TA]G[GA][AT]G[AGT][TG][GA][AG][GA][TA]G[AT][AG][AG][AT][AG][GA][GCA]A -------------------------------------------------------------------------------- Time 11.01 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 16 sites = 16 llr = 183 E-value = 1.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 1:4144:::2711861 pos.-specific C 62166:9:98159226 probability G 3:11:1:11::1:::: matrix T :833:519::34::33 bits 2.2 2.0 1.7 * * 1.5 **** * Relative 1.3 * **** ** Entropy 1.1 * * **** ** (16.5 bits) 0.9 * * ***** ** * 0.7 ** ** ***** ** * 0.4 ** ************* 0.2 **************** 0.0 ---------------- Multilevel CTACCTCTCCACCAAC consensus G TTAA TT TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 9649 303 3.28e-08 GAAAGAAGTC CTATCTCTCCATCAAT GTGGTGAATA 10753 303 3.28e-08 GAAAGAAGTC CTATCTCTCCATCAAT GTGGTGAATA 7868 68 1.78e-07 TTTTATCAGT CTACAACTCCAGCAAC TCAACAGGTG 24267 388 2.32e-07 CGGTATCCCT CTTCCTCTCAATCACC AAACAATTGC 6442 237 7.16e-07 CATTTGATGC GTATATCTCCACAAAC ATGGATAGGT 1684 446 9.71e-07 ACAGGGGTGG GTACAGCTCCTCCACC CTTACAATAG 270000 439 2.27e-06 CTCTGATACA CTTACTCGCCACCAAC ACATATCATC 3660 383 2.48e-06 ACTATTCAAA CCTCCGCTCAACCATC ACAGAACAAA 24100 112 2.48e-06 CAATGGGAGC ATTCAACTCCAACAAC CCCATAGGAC 25388 439 3.48e-06 TACTCCAAAC CCCCCTCTCCTTCCTC CCTCGTTCAC 6167 289 4.44e-06 GTCAACTTTG GCAGAACTCCACCAAT AGCAGTTAAG 262619 351 6.07e-06 TCGGTGCAAA CTACCACTGCACCATA TAGTCTTCCT 20988 278 6.07e-06 AGGGGGGTAC ATTCCTCTCCCCCCCC CGCCCGCTCG 24592 128 6.53e-06 ATTGCAGGAG GTGCCTTTCCTCCATC GATGTCTTCG 9506 325 9.39e-06 GACGGCTGAA CTCTCACTCCATACAT CGACGGTCTC 25318 310 1.61e-05 CTCCATGGTT GTGTAACTCATTCAAT CCTCAAGATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 9649 3.3e-08 302_[+3]_182 10753 3.3e-08 302_[+3]_182 7868 1.8e-07 67_[+3]_417 24267 2.3e-07 387_[+3]_97 6442 7.2e-07 236_[+3]_248 1684 9.7e-07 445_[+3]_39 270000 2.3e-06 438_[+3]_46 3660 2.5e-06 382_[+3]_102 24100 2.5e-06 111_[+3]_373 25388 3.5e-06 438_[+3]_46 6167 4.4e-06 288_[+3]_196 262619 6.1e-06 350_[+3]_134 20988 6.1e-06 277_[+3]_207 24592 6.5e-06 127_[+3]_357 9506 9.4e-06 324_[+3]_160 25318 1.6e-05 309_[+3]_175 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=16 seqs=16 9649 ( 303) CTATCTCTCCATCAAT 1 10753 ( 303) CTATCTCTCCATCAAT 1 7868 ( 68) CTACAACTCCAGCAAC 1 24267 ( 388) CTTCCTCTCAATCACC 1 6442 ( 237) GTATATCTCCACAAAC 1 1684 ( 446) GTACAGCTCCTCCACC 1 270000 ( 439) CTTACTCGCCACCAAC 1 3660 ( 383) CCTCCGCTCAACCATC 1 24100 ( 112) ATTCAACTCCAACAAC 1 25388 ( 439) CCCCCTCTCCTTCCTC 1 6167 ( 289) GCAGAACTCCACCAAT 1 262619 ( 351) CTACCACTGCACCATA 1 20988 ( 278) ATTCCTCTCCCCCCCC 1 24592 ( 128) GTGCCTTTCCTCCATC 1 9506 ( 325) CTCTCACTCCATACAT 1 25318 ( 310) GTGTAACTCATTCAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 11155 bayes= 9.44333 E= 1.5e-002 -114 135 40 -1064 -1064 -24 -1064 161 66 -82 -92 23 -214 135 -192 23 44 150 -1064 -1064 44 -1064 -92 91 -1064 208 -1064 -208 -1064 -1064 -192 182 -1064 208 -192 -1064 -56 188 -1064 -1064 132 -182 -1064 -9 -214 118 -192 50 -114 198 -1064 -1064 156 -24 -1064 -1064 103 -24 -1064 -9 -214 150 -1064 23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 16 E= 1.5e-002 0.125000 0.562500 0.312500 0.000000 0.000000 0.187500 0.000000 0.812500 0.437500 0.125000 0.125000 0.312500 0.062500 0.562500 0.062500 0.312500 0.375000 0.625000 0.000000 0.000000 0.375000 0.000000 0.125000 0.500000 0.000000 0.937500 0.000000 0.062500 0.000000 0.000000 0.062500 0.937500 0.000000 0.937500 0.062500 0.000000 0.187500 0.812500 0.000000 0.000000 0.687500 0.062500 0.000000 0.250000 0.062500 0.500000 0.062500 0.375000 0.125000 0.875000 0.000000 0.000000 0.812500 0.187500 0.000000 0.000000 0.562500 0.187500 0.000000 0.250000 0.062500 0.625000 0.000000 0.312500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [CG]T[AT][CT][CA][TA]CTCC[AT][CT]CA[AT][CT] -------------------------------------------------------------------------------- Time 15.95 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10753 7.81e-13 241_[+1(4.37e-08)]_45_\ [+3(3.28e-08)]_56_[+2(7.75e-09)]_105 1684 7.27e-06 278_[+2(1.41e-05)]_100_\ [+1(2.96e-05)]_30_[+3(9.71e-07)]_39 20988 4.68e-04 277_[+3(6.07e-06)]_31_\ [+1(4.21e-06)]_160 21326 6.38e-03 480_[+1(4.21e-06)]_4 24100 2.71e-06 36_[+1(1.97e-05)]_59_[+3(2.48e-06)]_\ 139_[+2(2.72e-06)]_213 24267 1.15e-08 14_[+2(7.53e-06)]_352_\ [+3(2.32e-07)]_58_[+1(1.87e-07)]_4_[+1(6.09e-05)]_3 24592 6.35e-06 127_[+3(6.53e-06)]_339_\ [+1(1.05e-07)]_2 25318 3.40e-06 77_[+1(9.59e-06)]_113_\ [+2(1.12e-06)]_82_[+3(1.61e-05)]_175 25388 1.22e-06 17_[+2(2.62e-05)]_89_[+2(5.33e-07)]_\ 49_[+1(2.96e-05)]_225_[+3(3.48e-06)]_46 261567 2.81e-07 166_[+2(4.77e-11)]_313 262619 3.17e-06 201_[+2(1.32e-06)]_29_\ [+2(1.99e-05)]_78_[+3(6.07e-06)]_104_[+1(1.97e-05)]_14 263347 1.21e-04 270_[+2(4.55e-05)]_160_\ [+2(2.89e-07)]_28 270000 2.22e-05 102_[+1(3.79e-07)]_320_\ [+3(2.27e-06)]_46 33984 7.06e-02 284_[+1(2.74e-05)]_200 3660 1.46e-06 16_[+2(7.79e-07)]_104_\ [+1(3.45e-05)]_225_[+3(2.48e-06)]_102 39726 7.58e-02 500 6167 3.62e-06 288_[+3(4.44e-06)]_110_\ [+2(2.72e-06)]_20_[+1(1.52e-05)]_29 6442 5.90e-07 102_[+1(5.81e-06)]_65_\ [+2(5.86e-06)]_32_[+3(7.16e-07)]_248 7627 5.14e-06 160_[+2(3.21e-07)]_[+2(3.16e-08)]_\ 272_[+1(7.13e-06)]_10 7868 1.78e-07 6_[+1(1.16e-05)]_45_[+3(1.78e-07)]_\ 43_[+2(3.15e-06)]_64_[+3(6.33e-05)]_273 9506 1.05e-07 157_[+2(1.86e-07)]_146_\ [+3(9.39e-06)]_144_[+1(2.08e-06)] 9649 7.81e-13 241_[+1(4.37e-08)]_45_\ [+3(3.28e-08)]_56_[+2(7.75e-09)]_105 bd392 5.78e-04 217_[+1(3.45e-05)]_102_\ [+2(2.00e-06)]_144 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************