******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/154/154.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10876 1.0000 500 11218 1.0000 500 11639 1.0000 500 15539 1.0000 500 21420 1.0000 500 22544 1.0000 500 24155 1.0000 500 24227 1.0000 500 2593 1.0000 500 260829 1.0000 500 261595 1.0000 500 261640 1.0000 500 262792 1.0000 500 263057 1.0000 500 263979 1.0000 500 269937 1.0000 500 35046 1.0000 500 37607 1.0000 500 7036 1.0000 500 7546 1.0000 500 7551 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/154/154.seqs.fa -oc motifs/154 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 21 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 10500 N= 21 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.266 C 0.237 G 0.247 T 0.251 Background letter frequencies (from dataset with add-one prior applied): A 0.266 C 0.237 G 0.247 T 0.251 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 15 sites = 21 llr = 207 E-value = 1.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 122:16:3742:35a pos.-specific C 84:a8:96:65262: probability G ::::::1:::2711: matrix T :38:13:12:1::1: bits 2.1 1.9 * * 1.7 * * * 1.5 * * * Relative 1.2 * * * Entropy 1.0 * *** * * * (14.2 bits) 0.8 * ******** ** * 0.6 * ******** ** * 0.4 * ******** ** * 0.2 *************** 0.0 --------------- Multilevel CCTCCACCACCGCAA consensus T T ATA A sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- 22544 416 6.36e-09 AAGAATCCTT CCTCCACAACCGCAA GTACCACCTG 262792 432 9.38e-08 ATTTGCAGTG CTTCCACCAACCCAA ATGTTTTGTG 24155 433 1.54e-07 ACAACTTCGA CCTCCACCTCCCCAA CCAACACTTA 263057 39 9.02e-07 CTGCCTCTGA CTACCTCCACAGCAA TTTGAGCCCT 15539 435 9.02e-07 CTAAATCCCC ATTCCACCACCGAAA CCACTCTCCA 24227 128 1.14e-06 GCGGCAGCTG CATCCTCCAACGATA GTTTGCCAGT 261640 96 3.12e-06 TTGCGTCCCT CCTCCCCCAATGCAA TTGCGGATTG 11218 450 3.47e-06 ATGTTGCTAT CCTCCTCATCGGCGA TCCACTACAC 37607 241 4.69e-06 GAACTTGTCG CATCTACCTACGCCA CCGCCACTGC 269937 467 5.74e-06 ACCATGGCGT CCACCACTACCGACA AATCCGCAGG 21420 484 6.30e-06 TCAGATAGAT CCTCCACCAACAATA CC 263979 453 9.20e-06 GCAATAATGA CAACCTCCACAGACA CGCTCATTGA 260829 343 9.20e-06 CACATTATTG CCTCCTCTACGGATA TTTGAACGTC 35046 87 2.57e-05 ATTTCCAGTA ATTCAACCAACCCAA ATGTTTTACG 7551 345 3.01e-05 CATATTGTGT CATCTACAACGCCGA CGACCTTCGT 11639 127 4.73e-05 CATCATCAAA CATCCTGACACGCAA AACCAAGCGA 10876 469 4.73e-05 CCCGTCCTCT CTCACACCACAGCAA CATCACAACC 261595 264 5.46e-05 ACTGCAGCAC CGTCCTCCTCTGGAA ACAACGGCAA 2593 433 8.83e-05 GTCCAATACA GCACCACATCGGCCA TATCGGCGTT 7036 395 1.07e-04 ACTTGGACTT CTTCAAGAAAAGCGA ACAACTCTCG 7546 49 2.45e-04 ATAAGACTCT TCTCTACCAACTGAA CAACTTCAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 22544 6.4e-09 415_[+1]_70 262792 9.4e-08 431_[+1]_54 24155 1.5e-07 432_[+1]_53 263057 9e-07 38_[+1]_447 15539 9e-07 434_[+1]_51 24227 1.1e-06 127_[+1]_358 261640 3.1e-06 95_[+1]_390 11218 3.5e-06 449_[+1]_36 37607 4.7e-06 240_[+1]_245 269937 5.7e-06 466_[+1]_19 21420 6.3e-06 483_[+1]_2 263979 9.2e-06 452_[+1]_33 260829 9.2e-06 342_[+1]_143 35046 2.6e-05 86_[+1]_399 7551 3e-05 344_[+1]_141 11639 4.7e-05 126_[+1]_359 10876 4.7e-05 468_[+1]_17 261595 5.5e-05 263_[+1]_222 2593 8.8e-05 432_[+1]_53 7036 0.00011 394_[+1]_91 7546 0.00024 48_[+1]_437 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=15 seqs=21 22544 ( 416) CCTCCACAACCGCAA 1 262792 ( 432) CTTCCACCAACCCAA 1 24155 ( 433) CCTCCACCTCCCCAA 1 263057 ( 39) CTACCTCCACAGCAA 1 15539 ( 435) ATTCCACCACCGAAA 1 24227 ( 128) CATCCTCCAACGATA 1 261640 ( 96) CCTCCCCCAATGCAA 1 11218 ( 450) CCTCCTCATCGGCGA 1 37607 ( 241) CATCTACCTACGCCA 1 269937 ( 467) CCACCACTACCGACA 1 21420 ( 484) CCTCCACCAACAATA 1 263979 ( 453) CAACCTCCACAGACA 1 260829 ( 343) CCTCCTCTACGGATA 1 35046 ( 87) ATTCAACCAACCCAA 1 7551 ( 345) CATCTACAACGCCGA 1 11639 ( 127) CATCCTGACACGCAA 1 10876 ( 469) CTCACACCACAGCAA 1 261595 ( 264) CGTCCTCCTCTGGAA 1 2593 ( 433) GCACCACATCGGCCA 1 7036 ( 395) CTTCAAGAAAAGCGA 1 7546 ( 49) TCTCTACCAACTGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 10206 bayes= 8.92184 E= 1.5e-004 -148 177 -237 -239 -16 85 -237 19 -48 -231 -1104 160 -248 200 -1104 -1104 -148 168 -1104 -81 122 -231 -1104 41 -1104 193 -137 -1104 11 138 -1104 -139 143 -231 -1104 -7 69 127 -1104 -1104 -48 114 -37 -139 -248 -32 153 -239 11 138 -137 -1104 98 -32 -79 -81 191 -1104 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 21 E= 1.5e-004 0.095238 0.809524 0.047619 0.047619 0.238095 0.428571 0.047619 0.285714 0.190476 0.047619 0.000000 0.761905 0.047619 0.952381 0.000000 0.000000 0.095238 0.761905 0.000000 0.142857 0.619048 0.047619 0.000000 0.333333 0.000000 0.904762 0.095238 0.000000 0.285714 0.619048 0.000000 0.095238 0.714286 0.047619 0.000000 0.238095 0.428571 0.571429 0.000000 0.000000 0.190476 0.523810 0.190476 0.095238 0.047619 0.190476 0.714286 0.047619 0.285714 0.619048 0.095238 0.000000 0.523810 0.190476 0.142857 0.142857 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- C[CTA]TCC[AT]C[CA][AT][CA]CG[CA]AA -------------------------------------------------------------------------------- Time 4.92 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 12 sites = 21 llr = 188 E-value = 4.9e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :21:1:::::23 pos.-specific C 1::2:2:3::2: probability G 98:83:66:a32 matrix T ::9:574:a:34 bits 2.1 ** 1.9 ** 1.7 ** 1.5 * * ** Relative 1.2 **** ** Entropy 1.0 **** ** ** (12.9 bits) 0.8 **** ***** 0.6 **** ***** 0.4 ********** 0.2 ********** * 0.0 ------------ Multilevel GGTGTTGGTGGT consensus A GCTC TA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 7546 263 5.66e-07 CGTCGAGTAC GGTGGTGGTGCT GCCCCGCTGA 263057 64 6.81e-07 TTTGAGCCCT GGTGTTTGTGGT TGATGAGGTG 11218 326 6.81e-07 TACACAGGAC GGTGTTTGTGGT CTGCCAAAGA 24155 8 9.61e-07 AAGGTTT GGTGGTGGTGTA CGACGACGAG 35046 124 1.24e-06 CTGCTTAACT GGTGTTGGTGAA GGGGTTCGTA 24227 363 3.57e-06 TCCGTCGTCG GATGTTGGTGGT TGGAGAGAAG 2593 80 1.03e-05 GAGACACGAC GATGTTGGTGTG CTCTGCACCA 262792 469 1.32e-05 TTGCTTCGCT GGTCTTGGTGAA GAGATAAGTA 263979 235 1.49e-05 TATGGTAAGT GGTGTCTGTGGG TCTGCTGGTG 269937 144 2.06e-05 GACGAAGAGC GATGGTGCTGTA AATCCATCAA 261640 154 2.06e-05 CAATGAAGCA GGAGTTGCTGCT ACTCAATCGG 21420 178 3.04e-05 ATGCTGATTG GGTGCTGCTGTT ACATGTCAGT 11639 21 4.82e-05 GAGGCCATCA GGTGTTTCTGCC CAGCACCATC 261595 418 7.73e-05 GGAAGGAGAG GGTCATTCTGTT TCAATTATGT 7036 48 1.02e-04 TTAAGAATGT GAAGGTTGTGGA TACGTCGATG 37607 40 1.02e-04 GATGTACACA CGTGACGGTGTA GGCACCAGAG 260829 186 1.33e-04 TTCGTAGGGT GATGTGTGTGCT GATGTGGCTT 10876 61 1.50e-04 AGGAGGAAGC GGTGGCTTTGGA GGAGGGGGGT 7551 289 1.59e-04 TGGCAACAAG CGTGGCGCTGAG GTAGCATCGA 15539 121 2.20e-04 AGAGGAGGGC GGACGCGGTGCG GATGGGGACA 22544 173 2.30e-04 TCTATTAGTG CGTCATGCTGAT TGATGGGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 7546 5.7e-07 262_[+2]_226 263057 6.8e-07 63_[+2]_425 11218 6.8e-07 325_[+2]_163 24155 9.6e-07 7_[+2]_481 35046 1.2e-06 123_[+2]_365 24227 3.6e-06 362_[+2]_126 2593 1e-05 79_[+2]_409 262792 1.3e-05 468_[+2]_20 263979 1.5e-05 234_[+2]_254 269937 2.1e-05 143_[+2]_345 261640 2.1e-05 153_[+2]_335 21420 3e-05 177_[+2]_311 11639 4.8e-05 20_[+2]_468 261595 7.7e-05 417_[+2]_71 7036 0.0001 47_[+2]_441 37607 0.0001 39_[+2]_449 260829 0.00013 185_[+2]_303 10876 0.00015 60_[+2]_428 7551 0.00016 288_[+2]_200 15539 0.00022 120_[+2]_368 22544 0.00023 172_[+2]_316 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=12 seqs=21 7546 ( 263) GGTGGTGGTGCT 1 263057 ( 64) GGTGTTTGTGGT 1 11218 ( 326) GGTGTTTGTGGT 1 24155 ( 8) GGTGGTGGTGTA 1 35046 ( 124) GGTGTTGGTGAA 1 24227 ( 363) GATGTTGGTGGT 1 2593 ( 80) GATGTTGGTGTG 1 262792 ( 469) GGTCTTGGTGAA 1 263979 ( 235) GGTGTCTGTGGG 1 269937 ( 144) GATGGTGCTGTA 1 261640 ( 154) GGAGTTGCTGCT 1 21420 ( 178) GGTGCTGCTGTT 1 11639 ( 21) GGTGTTTCTGCC 1 261595 ( 418) GGTCATTCTGTT 1 7036 ( 48) GAAGGTTGTGGA 1 37607 ( 40) CGTGACGGTGTA 1 260829 ( 186) GATGTGTGTGCT 1 10876 ( 61) GGTGGCTTTGGA 1 7551 ( 289) CGTGGCGCTGAG 1 15539 ( 121) GGACGCGGTGCG 1 22544 ( 173) CGTCATGCTGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 10269 bayes= 9.23615 E= 4.9e-003 -1104 -73 180 -1104 -16 -1104 163 -1104 -89 -1104 -1104 177 -1104 -32 171 -1104 -89 -231 43 93 -1104 1 -237 151 -1104 -1104 133 60 -1104 49 133 -239 -1104 -1104 -1104 200 -1104 -1104 202 -1104 -48 1 21 19 33 -231 -37 77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 21 E= 4.9e-003 0.000000 0.142857 0.857143 0.000000 0.238095 0.000000 0.761905 0.000000 0.142857 0.000000 0.000000 0.857143 0.000000 0.190476 0.809524 0.000000 0.142857 0.047619 0.333333 0.476190 0.000000 0.238095 0.047619 0.714286 0.000000 0.000000 0.619048 0.380952 0.000000 0.333333 0.619048 0.047619 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.190476 0.238095 0.285714 0.285714 0.333333 0.047619 0.190476 0.428571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- G[GA]TG[TG][TC][GT][GC]TG[GTC][TA] -------------------------------------------------------------------------------- Time 9.58 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 15 llr = 189 E-value = 2.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 111::3:357115215:191: pos.-specific C 8:926:733146157259:38 probability G :1:11:::22::1:215::3: matrix T 18:737341:5323:31:132 bits 2.1 1.9 1.7 * * 1.5 * ** Relative 1.2 * * * ** * Entropy 1.0 *** ** * ** * (18.2 bits) 0.8 ******* ** * *** * 0.6 ******* *** * *** * 0.4 ******** *** ** *** * 0.2 ********************* 0.0 --------------------- Multilevel CTCTCTCTAATCACCACCAGC consensus CTATCCGCTTTGTG TT sequence AG A C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 261595 106 9.31e-10 ATCTTTGGAT CTCTTTCTAACCACCAGCATT CATCGTACTT 35046 404 2.90e-09 GAGATGTTGC CTCTCTCACACTAACACCAGC AAGCAACCAC 2593 193 1.20e-08 TGCATGTCCC CTCTTTCTAATCATCCCAAGC GTTGCTATTC 15539 451 2.58e-08 CCACCGAAAC CACTCTCCAATCGACACCATC CGTCTCCCGA 11639 453 1.70e-07 ATCTACACAT CACGCACAAACCATCACCATC GTACAGCATC 10876 164 9.63e-07 AGAGATGGAT CTCGTTCTGACAATCCGCAGT TCAAGAAGAG 7551 413 1.05e-06 TGCTGCATCT CTCTCATAGGTAACGAGCAGC ACACGTATTC 263979 297 1.05e-06 TTGATCTGAG ATCTTTCCAATTTCATCCATC CAACGCTTCC 260829 35 1.13e-06 TTTCAATAGA TTCTCTCTCGCTCTCCGCAGC ATCATGACCA 24227 463 1.33e-06 AAGGCCGCCA CGCTCTTCAATCTCCTCCTCC AAGCTTACAG 22544 130 1.96e-06 ACTTCCTTTT CTCTCACAGAACTCGAGCACT GCTGAGTTGG 24155 471 3.26e-06 CCTCTACGCG ATACCTCCAACCAACACCAAC AGCACCATT 269937 300 3.50e-06 ACGAGAGGAT CTCCTTTTCATCCTCGTCACC TCGTTTCCAA 261640 299 3.50e-06 TCCATGACAA CTCTCACCTCTTACCTGAACC GACAGGTCTT 262792 41 4.30e-06 CGATTTCGGC CTCCGTTTCGTCGCGTGCATC CACTGCAGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 261595 9.3e-10 105_[+3]_374 35046 2.9e-09 403_[+3]_76 2593 1.2e-08 192_[+3]_287 15539 2.6e-08 450_[+3]_29 11639 1.7e-07 452_[+3]_27 10876 9.6e-07 163_[+3]_316 7551 1e-06 412_[+3]_67 263979 1e-06 296_[+3]_183 260829 1.1e-06 34_[+3]_445 24227 1.3e-06 462_[+3]_17 22544 2e-06 129_[+3]_350 24155 3.3e-06 470_[+3]_9 269937 3.5e-06 299_[+3]_180 261640 3.5e-06 298_[+3]_181 262792 4.3e-06 40_[+3]_439 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=15 261595 ( 106) CTCTTTCTAACCACCAGCATT 1 35046 ( 404) CTCTCTCACACTAACACCAGC 1 2593 ( 193) CTCTTTCTAATCATCCCAAGC 1 15539 ( 451) CACTCTCCAATCGACACCATC 1 11639 ( 453) CACGCACAAACCATCACCATC 1 10876 ( 164) CTCGTTCTGACAATCCGCAGT 1 7551 ( 413) CTCTCATAGGTAACGAGCAGC 1 263979 ( 297) ATCTTTCCAATTTCATCCATC 1 260829 ( 35) TTCTCTCTCGCTCTCCGCAGC 1 24227 ( 463) CGCTCTTCAATCTCCTCCTCC 1 22544 ( 130) CTCTCACAGAACTCGAGCACT 1 24155 ( 471) ATACCTCCAACCAACACCAAC 1 269937 ( 300) CTCCTTTTCATCCTCGTCACC 1 261640 ( 299) CTCTCACCTCTTACCTGAACC 1 262792 ( 41) CTCCGTTTCGTCGCGTGCATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 10080 bayes= 9.31509 E= 2.9e-001 -99 175 -1055 -191 -99 -1055 -188 167 -199 198 -1055 -1055 -1055 -25 -89 141 -1055 134 -188 41 1 -1055 -1055 155 -1055 163 -1055 9 1 49 -1055 67 81 17 -30 -191 147 -183 -30 -1055 -199 75 -1055 109 -99 134 -1055 9 101 -83 -89 -32 -41 98 -1055 41 -199 163 -30 -1055 81 -25 -188 9 -1055 98 92 -191 -99 187 -1055 -1055 181 -1055 -1055 -191 -199 17 43 41 -1055 175 -1055 -32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 15 E= 2.9e-001 0.133333 0.800000 0.000000 0.066667 0.133333 0.000000 0.066667 0.800000 0.066667 0.933333 0.000000 0.000000 0.000000 0.200000 0.133333 0.666667 0.000000 0.600000 0.066667 0.333333 0.266667 0.000000 0.000000 0.733333 0.000000 0.733333 0.000000 0.266667 0.266667 0.333333 0.000000 0.400000 0.466667 0.266667 0.200000 0.066667 0.733333 0.066667 0.200000 0.000000 0.066667 0.400000 0.000000 0.533333 0.133333 0.600000 0.000000 0.266667 0.533333 0.133333 0.133333 0.200000 0.200000 0.466667 0.000000 0.333333 0.066667 0.733333 0.200000 0.000000 0.466667 0.200000 0.066667 0.266667 0.000000 0.466667 0.466667 0.066667 0.133333 0.866667 0.000000 0.000000 0.933333 0.000000 0.000000 0.066667 0.066667 0.266667 0.333333 0.333333 0.000000 0.800000 0.000000 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- CTC[TC][CT][TA][CT][TCA][ACG][AG][TC][CT][AT][CTA][CG][ATC][CG]CA[GTC][CT] -------------------------------------------------------------------------------- Time 14.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10876 8.51e-05 163_[+3(9.63e-07)]_284_\ [+1(4.73e-05)]_17 11218 6.18e-05 325_[+2(6.81e-07)]_112_\ [+1(3.47e-06)]_36 11639 7.00e-06 20_[+2(4.82e-05)]_94_[+1(4.73e-05)]_\ 311_[+3(1.70e-07)]_27 15539 1.38e-07 434_[+1(9.02e-07)]_1_[+3(2.58e-08)]_\ 29 21420 9.85e-04 177_[+2(3.04e-05)]_294_\ [+1(6.30e-06)]_2 22544 8.11e-08 129_[+3(1.96e-06)]_265_\ [+1(6.36e-09)]_15_[+1(6.29e-05)]_40 24155 1.67e-08 7_[+2(9.61e-07)]_413_[+1(1.54e-07)]_\ 23_[+3(3.26e-06)]_9 24227 1.53e-07 127_[+1(1.14e-06)]_220_\ [+2(3.57e-06)]_88_[+3(1.33e-06)]_17 2593 2.82e-07 79_[+2(1.03e-05)]_101_\ [+3(1.20e-08)]_219_[+1(8.83e-05)]_53 260829 2.13e-05 34_[+3(1.13e-06)]_287_\ [+1(9.20e-06)]_143 261595 1.11e-07 105_[+3(9.31e-10)]_137_\ [+1(5.46e-05)]_139_[+2(7.73e-05)]_71 261640 4.38e-06 95_[+1(3.12e-06)]_43_[+2(2.06e-05)]_\ 133_[+3(3.50e-06)]_181 262792 1.49e-07 40_[+3(4.30e-06)]_201_\ [+2(3.75e-05)]_157_[+1(9.38e-08)]_22_[+2(1.32e-05)]_20 263057 8.58e-06 38_[+1(9.02e-07)]_10_[+2(6.81e-07)]_\ 425 263979 2.93e-06 234_[+2(1.49e-05)]_50_\ [+3(1.05e-06)]_57_[+3(4.22e-05)]_57_[+1(9.20e-06)]_33 269937 7.52e-06 143_[+2(2.06e-05)]_56_\ [+2(4.09e-05)]_76_[+3(3.50e-06)]_146_[+1(5.74e-06)]_19 35046 3.64e-09 86_[+1(2.57e-05)]_22_[+2(1.24e-06)]_\ 268_[+3(2.90e-09)]_76 37607 1.45e-03 240_[+1(4.69e-06)]_245 7036 6.16e-02 500 7546 5.56e-04 262_[+2(5.66e-07)]_226 7551 6.51e-05 344_[+1(3.01e-05)]_53_\ [+3(1.05e-06)]_67 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************