******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/178/178.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10969 1.0000 500 11744 1.0000 500 1465 1.0000 500 1470 1.0000 500 24076 1.0000 500 24120 1.0000 500 262361 1.0000 500 263036 1.0000 500 263787 1.0000 500 264316 1.0000 500 264761 1.0000 500 269188 1.0000 500 34390 1.0000 500 38732 1.0000 500 6655 1.0000 500 9569 1.0000 500 bd899 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/178/178.seqs.fa -oc motifs/178 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 17 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 8500 N= 17 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.270 C 0.220 G 0.244 T 0.266 Background letter frequencies (from dataset with add-one prior applied): A 0.270 C 0.220 G 0.244 T 0.266 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 12 llr = 186 E-value = 1.9e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 331:::::::312343::12: pos.-specific C 6282539:99:9536448523 probability G 1:1:3:11:::::4::1:::7 matrix T 16:828:9118:3::35347: bits 2.2 2.0 1.7 * ** * 1.5 **** * Relative 1.3 ** **** * * Entropy 1.1 ** ******* * * * (22.3 bits) 0.9 ** ******* * * * 0.7 ************ * ***** 0.4 ********************* 0.2 ********************* 0.0 --------------------- Multilevel CTCTCTCTCCTCCGCCTCCTG consensus AA GC A TAATCTT C sequence C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 34390 432 3.90e-11 AGTGGACCCG CTCTGCCTCCTCCGCTCCCTG ACCTCCGACG 10969 434 5.75e-11 TTCTCCCCGG CTCTCTCTCCTCAACCTCTTG CAACGTGAGC bd899 432 2.28e-10 ATATAATAGA CACTGCCTCCTCCGCTCCCTG ACCCCCGACG 264761 154 3.69e-09 CTCTTCTCTC GTCTCTCTCCTCTGCTCCCAG CTCCACCTGA 24120 446 1.17e-08 CCAACCATCA ACCTCTCTCCACCCCATCTTC ATCTCACCGA 1465 458 6.27e-08 TCCGGTGAAA CTCTTTCTCCTCCGACGTTCC CCTCCTCACA 269188 195 7.33e-08 AGGGGGGCAT CAGTGCCTCCTCTCCCTCTCG CAGCAACAAC 9569 445 1.33e-07 CATCAACAAC TCCTCTCTCCACCAACCCATC TTAATCCACA 38732 417 1.64e-07 CAACTAGAAG AACTTTCTCCTACGACTTTTG TGTCCATAGT 262361 233 2.62e-07 AAGGTAAAAG ATCCGTCTCTACTAATTCCTG TGAGAAACTC 264316 445 2.80e-07 GTCAGCATAA CTATCTGTCCTCACCACTCTG CCTTTGCCAG 263787 288 9.35e-07 GAGGCAACAT CTCCCTCGTCTCTAAATCCAC CCCTCAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 34390 3.9e-11 431_[+1]_48 10969 5.7e-11 433_[+1]_46 bd899 2.3e-10 431_[+1]_48 264761 3.7e-09 153_[+1]_326 24120 1.2e-08 445_[+1]_34 1465 6.3e-08 457_[+1]_22 269188 7.3e-08 194_[+1]_285 9569 1.3e-07 444_[+1]_35 38732 1.6e-07 416_[+1]_63 262361 2.6e-07 232_[+1]_247 264316 2.8e-07 444_[+1]_35 263787 9.4e-07 287_[+1]_192 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=12 34390 ( 432) CTCTGCCTCCTCCGCTCCCTG 1 10969 ( 434) CTCTCTCTCCTCAACCTCTTG 1 bd899 ( 432) CACTGCCTCCTCCGCTCCCTG 1 264761 ( 154) GTCTCTCTCCTCTGCTCCCAG 1 24120 ( 446) ACCTCTCTCCACCCCATCTTC 1 1465 ( 458) CTCTTTCTCCTCCGACGTTCC 1 269188 ( 195) CAGTGCCTCCTCTCCCTCTCG 1 9569 ( 445) TCCTCTCTCCACCAACCCATC 1 38732 ( 417) AACTTTCTCCTACGACTTTTG 1 262361 ( 233) ATCCGTCTCTACTAATTCCTG 1 264316 ( 445) CTATCTGTCCTCACCACTCTG 1 263787 ( 288) CTCCCTCGTCTCTAAATCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 8160 bayes= 9.85529 E= 1.9e-009 -11 140 -155 -167 -11 -40 -1023 113 -169 192 -155 -1023 -1023 -40 -1023 165 -1023 118 45 -67 -1023 18 -1023 150 -1023 206 -155 -1023 -1023 -1023 -155 179 -1023 206 -1023 -167 -1023 206 -1023 -167 -11 -1023 -1023 150 -169 206 -1023 -1023 -69 118 -1023 33 31 18 77 -1023 63 140 -1023 -1023 -11 92 -1023 33 -1023 92 -155 91 -1023 177 -1023 -9 -169 118 -1023 65 -69 -40 -1023 133 -1023 60 145 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 12 E= 1.9e-009 0.250000 0.583333 0.083333 0.083333 0.250000 0.166667 0.000000 0.583333 0.083333 0.833333 0.083333 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.500000 0.333333 0.166667 0.000000 0.250000 0.000000 0.750000 0.000000 0.916667 0.083333 0.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.916667 0.000000 0.083333 0.000000 0.916667 0.000000 0.083333 0.250000 0.000000 0.000000 0.750000 0.083333 0.916667 0.000000 0.000000 0.166667 0.500000 0.000000 0.333333 0.333333 0.250000 0.416667 0.000000 0.416667 0.583333 0.000000 0.000000 0.250000 0.416667 0.000000 0.333333 0.000000 0.416667 0.083333 0.500000 0.000000 0.750000 0.000000 0.250000 0.083333 0.500000 0.000000 0.416667 0.166667 0.166667 0.000000 0.666667 0.000000 0.333333 0.666667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CA][TA]CT[CG][TC]CTCC[TA]C[CT][GAC][CA][CTA][TC][CT][CT]T[GC] -------------------------------------------------------------------------------- Time 2.79 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 16 sites = 12 llr = 156 E-value = 4.7e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :342::1333:1::2: pos.-specific C :2:::::3::3::2:1 probability G 8258:a9368399:89 matrix T 341:a::21:4:18:: bits 2.2 2.0 ** 1.7 ** 1.5 *** ** * Relative 1.3 **** ***** Entropy 1.1 * **** * ***** (18.8 bits) 0.9 * **** * ***** 0.7 * ***** ** ***** 0.4 * ***** ******** 0.2 * ***** ******** 0.0 ---------------- Multilevel GTGGTGGGGGTGGTGG consensus TAA AAAC sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- bd899 164 3.36e-08 GGCGGAAGTA GCAGTGGGAGTGGTGG GAAGAAGAGA 34390 137 3.36e-08 GGCGGAAGTA GCAGTGGGAGTGGTGG GAAGAAGAGA 269188 440 4.96e-08 ATGAGTGGAT TTGGTGGTGGTGGTGG TATTGATTAT 10969 182 8.06e-08 GGCCAGTGCT GTGGTGGCTGCGGTGG CTGTTAGGAG 1470 46 1.59e-07 TCATTATGGT GAAGTGGTGACGGTGG ATGTGTTGTG 1465 94 2.89e-07 TGATGATTGT GAGGTGGAGGTAGTGG TTCGGGATGA 264761 263 3.17e-07 GCAGACGTAA GTAGTGGCGACGGTAG GCGGTGGAAG 38732 293 7.99e-07 GAAAGGCAAA TGTGTGGGGGGGGTGG ATGTAGAGGG 264316 241 7.99e-07 GCATTGAAAG GTGGTGGAGGCGTCGG TTTGGGTTTT 263036 246 7.99e-07 GTGGATGCTA GTGATGGAAAGGGTGG AATGTGGGGT 6655 343 4.49e-06 GAGAGGAAAC GAGGTGGGAGTGGCAC CGTGCAGCAA 11744 7 5.78e-06 TTGAGA TGAATGACGGGGGTGG TTCGGTAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- bd899 3.4e-08 163_[+2]_321 34390 3.4e-08 136_[+2]_348 269188 5e-08 439_[+2]_45 10969 8.1e-08 181_[+2]_303 1470 1.6e-07 45_[+2]_439 1465 2.9e-07 93_[+2]_391 264761 3.2e-07 262_[+2]_222 38732 8e-07 292_[+2]_192 264316 8e-07 240_[+2]_244 263036 8e-07 245_[+2]_239 6655 4.5e-06 342_[+2]_142 11744 5.8e-06 6_[+2]_478 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=16 seqs=12 bd899 ( 164) GCAGTGGGAGTGGTGG 1 34390 ( 137) GCAGTGGGAGTGGTGG 1 269188 ( 440) TTGGTGGTGGTGGTGG 1 10969 ( 182) GTGGTGGCTGCGGTGG 1 1470 ( 46) GAAGTGGTGACGGTGG 1 1465 ( 94) GAGGTGGAGGTAGTGG 1 264761 ( 263) GTAGTGGCGACGGTAG 1 38732 ( 293) TGTGTGGGGGGGGTGG 1 264316 ( 241) GTGGTGGAGGCGTCGG 1 263036 ( 246) GTGATGGAAAGGGTGG 1 6655 ( 343) GAGGTGGGAGTGGCAC 1 11744 ( 7) TGAATGACGGGGGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 8245 bayes= 9.87026 E= 4.7e-007 -1023 -1023 162 -9 -11 -40 -55 65 63 -1023 103 -167 -69 -1023 177 -1023 -1023 -1023 -1023 191 -1023 -1023 203 -1023 -169 -1023 191 -1023 -11 18 45 -67 31 -1023 125 -167 -11 -1023 162 -1023 -1023 60 3 65 -169 -1023 191 -1023 -1023 -1023 191 -167 -1023 -40 -1023 165 -69 -1023 177 -1023 -1023 -140 191 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 12 E= 4.7e-007 0.000000 0.000000 0.750000 0.250000 0.250000 0.166667 0.166667 0.416667 0.416667 0.000000 0.500000 0.083333 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.083333 0.000000 0.916667 0.000000 0.250000 0.250000 0.333333 0.166667 0.333333 0.000000 0.583333 0.083333 0.250000 0.000000 0.750000 0.000000 0.000000 0.333333 0.250000 0.416667 0.083333 0.000000 0.916667 0.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.166667 0.000000 0.833333 0.166667 0.000000 0.833333 0.000000 0.000000 0.083333 0.916667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [GT][TA][GA]GTGG[GAC][GA][GA][TCG]GGTGG -------------------------------------------------------------------------------- Time 5.21 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 13 llr = 182 E-value = 1.9e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 239158128:84422::4::8 pos.-specific C 84:91:6128:464772293: probability G :3::51:8:122:31:52:61 matrix T ::1::23::2:1:2:332111 bits 2.2 2.0 1.7 * * 1.5 ** * Relative 1.3 * ** * * * Entropy 1.1 * ** **** * * * * (20.2 bits) 0.9 * ** ****** * ** *** 0.7 * ********* * *** *** 0.4 *********** * *** *** 0.2 ***************** *** 0.0 --------------------- Multilevel CCACAACGACAACCCCGACGA consensus AA G T GCAGATTC C sequence G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 24076 261 1.63e-10 ACGCCAAACC CCACAACGCCAACGCCGACGA GCACCATGGA 263787 224 4.69e-09 ACCTCACTTT CCACGATGACATCCCCTCCCA CAGTCAAAGT 269188 219 1.21e-08 CCTCTCGCAG CAACAACAACAACAACGACGA CGGGCAATTA 1470 404 3.16e-08 ACATAACCAG AAACGACGAGACCGCCTTCGA GGTTCGAGGC 6655 116 5.20e-08 GCGTCTAATC CAACAATGACAGCGGTGACGA TTGACACATC bd899 458 5.73e-08 CCCTGACCCC CGACGTCGACACACCTCGCCA CTACCATTAC 34390 458 5.73e-08 CCCTGACCTC CGACGTCGACACACCTCGCCA CTACCATTAC 10969 106 1.09e-07 TGACGATGGT CGACGATGACGACGACGATGA CGTGGTGGTA 1465 29 3.52e-07 AATAGGCCGG CGACGGCGATGCCTCCTCCCA TGATGACGTT 262361 340 4.44e-07 GTCGTCGACA CCACCACAACAAATCCGTCGG ACGACGTCAA 24120 292 5.55e-07 CCCAATCCTT CAACAAAGCTGCCACCGCCGA CCGCCGCTGT 11744 136 2.26e-06 ATCAACCAAA ACACAACCACAAACCCTTCTT CATCACTGAA 9569 135 5.01e-06 ATGCCAACTG ACTAAATGACAGACATGACGA ATGTCTGTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 24076 1.6e-10 260_[+3]_219 263787 4.7e-09 223_[+3]_256 269188 1.2e-08 218_[+3]_261 1470 3.2e-08 403_[+3]_76 6655 5.2e-08 115_[+3]_364 bd899 5.7e-08 457_[+3]_22 34390 5.7e-08 457_[+3]_22 10969 1.1e-07 105_[+3]_374 1465 3.5e-07 28_[+3]_451 262361 4.4e-07 339_[+3]_140 24120 5.6e-07 291_[+3]_188 11744 2.3e-06 135_[+3]_344 9569 5e-06 134_[+3]_345 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=13 24076 ( 261) CCACAACGCCAACGCCGACGA 1 263787 ( 224) CCACGATGACATCCCCTCCCA 1 269188 ( 219) CAACAACAACAACAACGACGA 1 1470 ( 404) AAACGACGAGACCGCCTTCGA 1 6655 ( 116) CAACAATGACAGCGGTGACGA 1 bd899 ( 458) CGACGTCGACACACCTCGCCA 1 34390 ( 458) CGACGTCGACACACCTCGCCA 1 10969 ( 106) CGACGATGACGACGACGATGA 1 1465 ( 29) CGACGGCGATGCCTCCTCCCA 1 262361 ( 340) CCACCACAACAAATCCGTCGG 1 24120 ( 292) CAACAAAGCTGCCACCGCCGA 1 11744 ( 136) ACACAACCACAAACCCTTCTT 1 9569 ( 135) ACTAAATGACAGACATGACGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 8160 bayes= 9.82284 E= 1.9e-005 -22 180 -1035 -1035 19 80 33 -1035 178 -1035 -1035 -179 -181 207 -1035 -1035 78 -152 92 -1035 151 -1035 -167 -79 -181 148 -1035 21 -81 -152 165 -1035 165 -52 -1035 -1035 -1035 180 -167 -79 151 -1035 -8 -1035 51 80 -67 -179 51 148 -1035 -1035 -81 80 33 -79 -22 165 -167 -1035 -1035 165 -1035 21 -1035 -52 114 21 51 7 -67 -20 -1035 207 -1035 -179 -1035 48 133 -179 165 -1035 -167 -179 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 13 E= 1.9e-005 0.230769 0.769231 0.000000 0.000000 0.307692 0.384615 0.307692 0.000000 0.923077 0.000000 0.000000 0.076923 0.076923 0.923077 0.000000 0.000000 0.461538 0.076923 0.461538 0.000000 0.769231 0.000000 0.076923 0.153846 0.076923 0.615385 0.000000 0.307692 0.153846 0.076923 0.769231 0.000000 0.846154 0.153846 0.000000 0.000000 0.000000 0.769231 0.076923 0.153846 0.769231 0.000000 0.230769 0.000000 0.384615 0.384615 0.153846 0.076923 0.384615 0.615385 0.000000 0.000000 0.153846 0.384615 0.307692 0.153846 0.230769 0.692308 0.076923 0.000000 0.000000 0.692308 0.000000 0.307692 0.000000 0.153846 0.538462 0.307692 0.384615 0.230769 0.153846 0.230769 0.000000 0.923077 0.000000 0.076923 0.000000 0.307692 0.615385 0.076923 0.846154 0.000000 0.076923 0.076923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [CA][CAG]AC[AG]A[CT]GAC[AG][AC][CA][CG][CA][CT][GT][ACT]C[GC]A -------------------------------------------------------------------------------- Time 7.59 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10969 4.18e-14 105_[+3(1.09e-07)]_55_\ [+2(8.06e-08)]_236_[+1(5.75e-11)]_46 11744 1.02e-04 6_[+2(5.78e-06)]_113_[+3(2.26e-06)]_\ 344 1465 3.00e-10 28_[+3(3.52e-07)]_44_[+2(2.89e-07)]_\ 348_[+1(6.27e-08)]_22 1470 2.24e-07 45_[+2(1.59e-07)]_342_\ [+3(3.16e-08)]_57_[+2(9.40e-05)]_3 24076 1.88e-06 260_[+3(1.63e-10)]_36_\ [+3(7.80e-05)]_162 24120 1.12e-07 291_[+3(5.55e-07)]_111_\ [+1(7.74e-05)]_1_[+1(1.17e-08)]_34 262361 4.17e-06 232_[+1(2.62e-07)]_86_\ [+3(4.44e-07)]_140 263036 6.07e-03 245_[+2(7.99e-07)]_239 263787 2.30e-07 223_[+3(4.69e-09)]_10_\ [+3(3.63e-05)]_12_[+1(9.35e-07)]_192 264316 2.22e-06 240_[+2(7.99e-07)]_188_\ [+1(2.80e-07)]_35 264761 2.31e-08 153_[+1(3.69e-09)]_88_\ [+2(3.17e-07)]_222 269188 2.83e-12 3_[+2(3.63e-05)]_175_[+1(7.33e-08)]_\ 3_[+3(1.21e-08)]_200_[+2(4.96e-08)]_45 34390 6.81e-15 136_[+2(3.36e-08)]_10_\ [+2(5.84e-05)]_253_[+1(3.90e-11)]_5_[+3(5.73e-08)]_22 38732 5.13e-06 292_[+2(7.99e-07)]_108_\ [+1(1.64e-07)]_63 6655 6.28e-06 115_[+3(5.20e-08)]_206_\ [+2(4.49e-06)]_142 9569 2.14e-05 134_[+3(5.01e-06)]_289_\ [+1(1.33e-07)]_35 bd899 3.64e-14 163_[+2(3.36e-08)]_10_\ [+2(5.84e-05)]_226_[+1(2.28e-10)]_5_[+3(5.73e-08)]_22 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************