******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/208/208.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10818 1.0000 500 11332 1.0000 500 15464 1.0000 500 1650 1.0000 500 1727 1.0000 500 18462 1.0000 500 2045 1.0000 500 20846 1.0000 500 22877 1.0000 500 22963 1.0000 500 23399 1.0000 500 23516 1.0000 500 24754 1.0000 500 25077 1.0000 500 260846 1.0000 500 261422 1.0000 500 261982 1.0000 500 262207 1.0000 500 262575 1.0000 500 263006 1.0000 500 263007 1.0000 500 263061 1.0000 500 264177 1.0000 500 268541 1.0000 500 269110 1.0000 500 269114 1.0000 500 2733 1.0000 500 2779 1.0000 500 31003 1.0000 500 3119 1.0000 500 32295 1.0000 500 32876 1.0000 500 3298 1.0000 500 33094 1.0000 500 33950 1.0000 500 34684 1.0000 500 35036 1.0000 500 35816 1.0000 500 36964 1.0000 500 38285 1.0000 500 38449 1.0000 500 40232 1.0000 500 4292 1.0000 500 4353 1.0000 500 4409 1.0000 500 4460 1.0000 500 4980 1.0000 500 5135 1.0000 500 5585 1.0000 500 5872 1.0000 500 6234 1.0000 500 6243 1.0000 500 6456 1.0000 500 6504 1.0000 500 6505 1.0000 500 6817 1.0000 500 7160 1.0000 500 7506 1.0000 500 7564 1.0000 500 7641 1.0000 500 8065 1.0000 500 8333 1.0000 500 8599 1.0000 500 8824 1.0000 500 942 1.0000 500 9834 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/208/208.seqs.fa -oc motifs/208 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 66 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 33000 N= 66 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.262 C 0.226 G 0.243 T 0.269 Background letter frequencies (from dataset with add-one prior applied): A 0.262 C 0.226 G 0.243 T 0.269 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 20 sites = 42 llr = 459 E-value = 1.2e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :2:1311:::2::2::::33 pos.-specific C 1:1:21:4::12312:23:: probability G 81281182:9:56:271471 matrix T 16713714a163165363:6 bits 2.1 1.9 * 1.7 * 1.5 ** Relative 1.3 ** Entropy 1.1 * * * ** * (15.8 bits) 0.9 * * * ** * * * 0.6 * ** ** ** ***** ** 0.4 **** *************** 0.2 **** *************** 0.0 -------------------- Multilevel GTTGATGCTGTGGTTGTGGT consensus AG T T ATCACT CAA sequence C G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 7564 254 1.77e-09 TGTGTTGGAA GTTGTTGCTGTCGTTGCCGT TATCGTCGTG 263007 252 3.83e-09 AGCCATCAAT GTTGTTGCTGTGGCCGTCGT TTTCAGACAA 263006 252 3.83e-09 AGCCATCAAT GTTGTTGCTGTGGCCGTCGT TTTCAGACAA 6243 80 4.64e-09 GGGGGTGGCA GTTGATGTTGATGTGGTGGT GAGTTGCCGG 942 225 5.47e-08 ACTCTTCAAG GATGTTGTTGAGCTTGTCGA CTGATTGCGT 25077 311 8.42e-08 CCTGACAGAT GTTGATGCTGCTCTTTTGAT GGGATTTCAT 5585 230 9.69e-08 GCTGTATTCG GTTGTTGGTGTTGTTTCGAT AGTCAAATAT 36964 90 2.47e-07 TGCGGTTGCG GTGTTTGTTGTTGTGGTTGT TGCGAACGTT 11332 256 2.80e-07 AGCGTTGGAA GTTGAAGGTGAGGATGTTGT CGAACGTCGG 4353 63 3.59e-07 TGGTGCTTAA TTTGCCGCTGTGGTCGTCGT CCGCTGTACT 20846 111 5.17e-07 CGAGGATGAT GATGCTGTTGCTCATGTTGT TGATGCTCCT 7506 243 5.82e-07 GCTTTGGTTT GTGGGTGTTGCCCTTTTCGT CGTCAGAATG 263061 125 6.54e-07 CGCGTCGTCC GTCGTTGCTGTCGTTGACGA TCGGGTAGTT 10818 93 6.54e-07 ATCACTTGGC GTTGATACTGTGGATTTGAA TACGATGAAG 264177 239 9.22e-07 CTGTTCTGAT CATGGTGCTGTGCTGTTGGT GTGCGTTTGA 6456 184 1.03e-06 GGACGGAATC GTCGCTGGTGTTGTTGCCGG AGATCGTCAT 3298 71 1.03e-06 AGGAGTTTTG GTGGGTGCTGTTGCTGCGAT CGTAGGTGTG 35816 123 1.77e-06 GCCTGTGACA GATGCGGTTGAGGACTTGGT GAAAGCATTT 35036 373 2.41e-06 CCATCAGCAA GTTTACGCTGTGCACGTGGA AATTGACCGC 6817 244 2.67e-06 GGGCCGCTTA GTCTCTGTTGTCGTCGTCGG CCGAGGAAAA 18462 452 2.95e-06 ATTATGTGTC GGTATTGCTGACGTTGGCGT TGGACATTCG 8599 420 4.79e-06 TAGATGGTGA GACGTTGTTGTTGTTTTCCT AACAAAATAC 7160 253 4.79e-06 TATTTGATAC GATGATTCTGTGGTGTCTGG TGCAGAACGA 5872 45 4.79e-06 GTGGTGTCAC GTGAATGTTGTGTTTGCGAT GAGTAGTGTG 269110 334 5.77e-06 CTTGGCATAT CGTGTTGTTGGGGTTGTGGA GTGGAGCTTA 24754 196 5.77e-06 TCGGGTATCG GGTGGTGGTGAGGATTGGGA GCCGAGTCAG 6505 231 6.93e-06 CGCTGCGTTG GTTGATTCTGTGCTGTGGAG GAGGAGGCGA 4980 437 6.93e-06 ACGTGATGCG GTTTATGCTGTGCATTTTTT AGGGAGCACT 4292 185 6.93e-06 GACATGGTTG GGTGCTGGTTTGTTTGGGGT ATAGTGGTAG 32295 371 1.17e-05 ATGGATGAGT GTTTGGGGTGTGGACGTGAA GGAGGCCGCC 40232 56 1.50e-05 TGGGGCAATG TATGCTGGTGATGTGGGGGA CCATAAACAC 38449 388 1.63e-05 GAAGAATTCA GCTTTGGTTGTGTTCGTCGT CGCCAGCTGC 2779 177 2.07e-05 GGCGTGGGTA GAGGCTGCTGCCGCTGCCAA GCACAAAGTG 268541 397 2.07e-05 TTTGTTTCTC CTGGTTACTTTGGATGTTGT AGCATGCGGT 4409 462 2.24e-05 CAACCTCCAA GTTACTTTTGAGCAGTTTGT CCTACCAACA 2733 146 2.61e-05 GGCCGAGGAG GTGGAAGTTGTTCGTTTGAT AAATGCTAGG 33950 316 3.04e-05 AGACGATAGT GCGGATGCTGCCTTCTTCGA CGAGGAAGAC 15464 48 3.52e-05 ATGGCAGAGC GTTGAATTTTCTGTGGTGAT ACCCAACAAG 34684 308 3.79e-05 CCGTGCTTTC TGTGAGGCTTAGCTTGTTGT GCTTTGTTAC 269114 199 4.07e-05 GTGGATTGAT GATGATATTGATGTTGATAA TATTGTATTT 262207 93 5.38e-05 GGTAGATTTC CTCGTCTTTGTGGTGGGTGT CTTTGATTTA 1650 190 5.38e-05 GTTGCGTTGG TTGGGATGTGTCGTCGTTGT CGGCTGTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 7564 1.8e-09 253_[+1]_227 263007 3.8e-09 251_[+1]_229 263006 3.8e-09 251_[+1]_229 6243 4.6e-09 79_[+1]_401 942 5.5e-08 224_[+1]_256 25077 8.4e-08 310_[+1]_170 5585 9.7e-08 229_[+1]_251 36964 2.5e-07 89_[+1]_391 11332 2.8e-07 255_[+1]_225 4353 3.6e-07 62_[+1]_418 20846 5.2e-07 110_[+1]_370 7506 5.8e-07 242_[+1]_238 263061 6.5e-07 124_[+1]_356 10818 6.5e-07 92_[+1]_388 264177 9.2e-07 238_[+1]_242 6456 1e-06 183_[+1]_297 3298 1e-06 70_[+1]_410 35816 1.8e-06 122_[+1]_358 35036 2.4e-06 372_[+1]_108 6817 2.7e-06 243_[+1]_237 18462 2.9e-06 451_[+1]_29 8599 4.8e-06 419_[+1]_61 7160 4.8e-06 252_[+1]_228 5872 4.8e-06 44_[+1]_436 269110 5.8e-06 333_[+1]_147 24754 5.8e-06 195_[+1]_285 6505 6.9e-06 230_[+1]_250 4980 6.9e-06 436_[+1]_44 4292 6.9e-06 184_[+1]_296 32295 1.2e-05 370_[+1]_110 40232 1.5e-05 55_[+1]_425 38449 1.6e-05 387_[+1]_93 2779 2.1e-05 176_[+1]_304 268541 2.1e-05 396_[+1]_84 4409 2.2e-05 461_[+1]_19 2733 2.6e-05 145_[+1]_335 33950 3e-05 315_[+1]_165 15464 3.5e-05 47_[+1]_433 34684 3.8e-05 307_[+1]_173 269114 4.1e-05 198_[+1]_282 262207 5.4e-05 92_[+1]_388 1650 5.4e-05 189_[+1]_291 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=20 seqs=42 7564 ( 254) GTTGTTGCTGTCGTTGCCGT 1 263007 ( 252) GTTGTTGCTGTGGCCGTCGT 1 263006 ( 252) GTTGTTGCTGTGGCCGTCGT 1 6243 ( 80) GTTGATGTTGATGTGGTGGT 1 942 ( 225) GATGTTGTTGAGCTTGTCGA 1 25077 ( 311) GTTGATGCTGCTCTTTTGAT 1 5585 ( 230) GTTGTTGGTGTTGTTTCGAT 1 36964 ( 90) GTGTTTGTTGTTGTGGTTGT 1 11332 ( 256) GTTGAAGGTGAGGATGTTGT 1 4353 ( 63) TTTGCCGCTGTGGTCGTCGT 1 20846 ( 111) GATGCTGTTGCTCATGTTGT 1 7506 ( 243) GTGGGTGTTGCCCTTTTCGT 1 263061 ( 125) GTCGTTGCTGTCGTTGACGA 1 10818 ( 93) GTTGATACTGTGGATTTGAA 1 264177 ( 239) CATGGTGCTGTGCTGTTGGT 1 6456 ( 184) GTCGCTGGTGTTGTTGCCGG 1 3298 ( 71) GTGGGTGCTGTTGCTGCGAT 1 35816 ( 123) GATGCGGTTGAGGACTTGGT 1 35036 ( 373) GTTTACGCTGTGCACGTGGA 1 6817 ( 244) GTCTCTGTTGTCGTCGTCGG 1 18462 ( 452) GGTATTGCTGACGTTGGCGT 1 8599 ( 420) GACGTTGTTGTTGTTTTCCT 1 7160 ( 253) GATGATTCTGTGGTGTCTGG 1 5872 ( 45) GTGAATGTTGTGTTTGCGAT 1 269110 ( 334) CGTGTTGTTGGGGTTGTGGA 1 24754 ( 196) GGTGGTGGTGAGGATTGGGA 1 6505 ( 231) GTTGATTCTGTGCTGTGGAG 1 4980 ( 437) GTTTATGCTGTGCATTTTTT 1 4292 ( 185) GGTGCTGGTTTGTTTGGGGT 1 32295 ( 371) GTTTGGGGTGTGGACGTGAA 1 40232 ( 56) TATGCTGGTGATGTGGGGGA 1 38449 ( 388) GCTTTGGTTGTGTTCGTCGT 1 2779 ( 177) GAGGCTGCTGCCGCTGCCAA 1 268541 ( 397) CTGGTTACTTTGGATGTTGT 1 4409 ( 462) GTTACTTTTGAGCAGTTTGT 1 2733 ( 146) GTGGAAGTTGTTCGTTTGAT 1 33950 ( 316) GCGGATGCTGCCTTCTTCGA 1 15464 ( 48) GTTGAATTTTCTGTGGTGAT 1 34684 ( 308) TGTGAGGCTTAGCTTGTTGT 1 269114 ( 199) GATGATATTGATGTTGATAA 1 262207 ( 93) CTCGTCTTTGTGGTGGGTGT 1 1650 ( 190) TTGGGATGTGTCGTCGTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 31746 bayes= 10.5473 E= 1.2e-020 -1204 -125 173 -150 -29 -225 -103 120 -1204 -92 -18 131 -187 -1204 169 -91 35 -8 -77 20 -146 -166 -135 146 -187 -1204 169 -91 -1204 92 -35 50 -1204 -1204 -1204 189 -1204 -1204 190 -150 -14 -66 -335 115 -1204 -25 111 9 -1204 21 140 -150 -14 -125 -335 126 -1204 7 -18 103 -1204 -1204 145 31 -246 -44 -77 126 -1204 56 73 -4 0 -324 151 -349 0 -1204 -135 126 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 42 E= 1.2e-020 0.000000 0.095238 0.809524 0.095238 0.214286 0.047619 0.119048 0.619048 0.000000 0.119048 0.214286 0.666667 0.071429 0.000000 0.785714 0.142857 0.333333 0.214286 0.142857 0.309524 0.095238 0.071429 0.095238 0.738095 0.071429 0.000000 0.785714 0.142857 0.000000 0.428571 0.190476 0.380952 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.904762 0.095238 0.238095 0.142857 0.023810 0.595238 0.000000 0.190476 0.523810 0.285714 0.000000 0.261905 0.642857 0.095238 0.238095 0.095238 0.023810 0.642857 0.000000 0.238095 0.214286 0.547619 0.000000 0.000000 0.666667 0.333333 0.047619 0.166667 0.142857 0.642857 0.000000 0.333333 0.404762 0.261905 0.261905 0.023810 0.690476 0.023810 0.261905 0.000000 0.095238 0.642857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- G[TA][TG]G[ATC]TG[CT]TG[TA][GT][GC][TA][TCG][GT]T[GCT][GA][TA] -------------------------------------------------------------------------------- Time 33.42 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 39 llr = 425 E-value = 5.7e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :3215314229251532:332 pos.-specific C 933917625818453348157 probability G :1::2::11::::4:::122: matrix T 135:2:332:::1:2441412 bits 2.1 1.9 1.7 1.5 * * * Relative 1.3 * * * *** * Entropy 1.1 * * * *** * (15.7 bits) 0.9 * * ** *** * * 0.6 * * ** ***** ** * 0.4 * ** ** ******* ** ** 0.2 * ******************* 0.0 --------------------- Multilevel CTTCACCACCACACATTCTCC consensus AC GATTTA ACGCAC AA sequence C T C C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 8824 280 2.54e-09 TGGATCCTTC CATCACCACCACCCTATCAAC GCATGTCCCG 7160 434 4.55e-09 CAGCTGCCGC CTCCACCACCACCGCTTCTCT TCATAAACCA 268541 188 7.61e-08 AACCAAAGAT CCTCCCCCTCACCCCCACTCC GTCGTCCTAC 261422 453 8.79e-08 TCACAAACAT CACCTACCCCACCGTTCCTCC TCTCTGCCTC 269114 467 1.01e-07 TCACACGTCA CATCACCTCCACTGATACTGC ACTCACCTCC 31003 137 2.27e-07 CTACCAATCC TACCACCACCCCACCACCTCC AGCCGTAAAA 269110 479 2.27e-07 ACTTTCGTGC CTTCACCCACACAAAATCGAC G 264177 452 3.77e-07 TCCCAGCCTT CTTCACTACAAAACAACCAAC CCTCAACCCT 22963 356 5.41e-07 CCAACCAGCC CTTCACATTCACACACACAAC ACCTCACAAA 6504 456 7.67e-07 GTCGCCTCCT CCTCCACAGCACAGAATCAAC CAACGCAGCG 38285 473 7.67e-07 ACATAGTAAA CCCCCCTAACACACACTCTCA TCACAAC 4353 454 9.61e-07 GCCACCCTCT CCTCACCAACACCCAACGGCA CCCTTCGTCG 8065 476 1.34e-06 AAGCTACACA TCACACATCCACCCAACCGCC AACA 2733 326 1.34e-06 CACGTGCAAC CGACTCCCCCAACCCTCCGAC CCTCTAGCTA 3119 451 1.65e-06 TAAAAACAGC CATATCTTCCACCGCTCCTCT CTCATCGCCC 6456 468 1.83e-06 CCCGAAACAA CGTCTCTCCCACAACTTCTGC CAACATTTCT 5872 468 1.83e-06 CTTTCCTCGG CTCCACCAGCACAGCGTCAAC ACTCCTGAAA 35816 461 1.83e-06 TTTAATCGCA CTTCTCTACAACACTATCACA CAACAGTAAC 18462 245 1.83e-06 CAACCACCTC CTCCACATCCACCGACCTTGC TCTTCCCGCA 261982 435 2.03e-06 CATGGTTTTG CTTCGCCTCCACAGTTCGGCT CGCAGGTTGT 4980 272 2.49e-06 CGCCATCACC CATCGCCACCCATCAACCGAC TGCAACGCAT 7564 476 4.90e-06 AACGCCTGCA CGCCACCTACACCGACACAGT GACA 2779 414 5.90e-06 CAGAAGTGAC ACTCAACACAACCGATACTCC TTCTCCTGCT 8333 111 7.71e-06 TTTGTATCAG CCCCACTGCCACCGCCCGTCT GCTTCGACGG 1650 34 7.71e-06 TTTCCATCGA CGTCGCCATCACTGCTTCCGC CCAGTACGAT 15464 473 7.71e-06 GCACCCTGCA CCTCACTCACAACCACTTGAC ATCCATA 10818 338 7.71e-06 AAACAAAGCT CTTCGATGCAACTCACTCTCC ACGTCAGCCA 24754 475 8.42e-06 CTTTTTGCAA CACAGACCTCCCACCTCCTCC TCTGC 7641 468 1.29e-05 GGATAAGGTT CTACTCTCTCAAACTCCCTCT GGCTCCTCTA 262575 462 1.39e-05 CTTCTCCCGC CACAAACTACACCCATATTCC ATCAACAACC 22877 364 1.39e-05 ACAACGCAGC TTTCACCCTCAAACCCTCGAA CATGAGCGAA 7506 13 1.64e-05 CGTCTCTGAA CTCATACACAACCCACTCTTC GAAGGCACAG 6234 476 1.77e-05 ATCGGCAAAG CAACGCAACAACCATTCCAAC GACG 6505 458 1.92e-05 AGGCAAACCT CTACAACTGCAAAAATCCAGC CGTAACACCA 5585 440 2.07e-05 TTGGCCACTG CCTCCACTCACCAGCATCATC AAGTGAAGAA 260846 115 2.24e-05 CATTTAAGCG CCTCTCCATCACATAACTACA AATCATAAAT 38449 454 2.42e-05 AATTTTCACC CAAGGCCTCAAAAGATTCACC TCCAGCTCGC 20846 479 2.81e-05 TGCTGAAGCC CAACGATTACACACCATCCCA A 4292 436 4.63e-05 ACAAATGTTT TCTCCCCTTCCCTCTTTCTCT CTCTCCTCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 8824 2.5e-09 279_[+2]_200 7160 4.6e-09 433_[+2]_46 268541 7.6e-08 187_[+2]_292 261422 8.8e-08 452_[+2]_27 269114 1e-07 466_[+2]_13 31003 2.3e-07 136_[+2]_343 269110 2.3e-07 478_[+2]_1 264177 3.8e-07 451_[+2]_28 22963 5.4e-07 355_[+2]_124 6504 7.7e-07 455_[+2]_24 38285 7.7e-07 472_[+2]_7 4353 9.6e-07 453_[+2]_26 8065 1.3e-06 475_[+2]_4 2733 1.3e-06 325_[+2]_154 3119 1.7e-06 450_[+2]_29 6456 1.8e-06 467_[+2]_12 5872 1.8e-06 467_[+2]_12 35816 1.8e-06 460_[+2]_19 18462 1.8e-06 244_[+2]_235 261982 2e-06 434_[+2]_45 4980 2.5e-06 271_[+2]_208 7564 4.9e-06 475_[+2]_4 2779 5.9e-06 413_[+2]_66 8333 7.7e-06 110_[+2]_369 1650 7.7e-06 33_[+2]_446 15464 7.7e-06 472_[+2]_7 10818 7.7e-06 337_[+2]_142 24754 8.4e-06 474_[+2]_5 7641 1.3e-05 467_[+2]_12 262575 1.4e-05 461_[+2]_18 22877 1.4e-05 363_[+2]_116 7506 1.6e-05 12_[+2]_467 6234 1.8e-05 475_[+2]_4 6505 1.9e-05 457_[+2]_22 5585 2.1e-05 439_[+2]_40 260846 2.2e-05 114_[+2]_365 38449 2.4e-05 453_[+2]_26 20846 2.8e-05 478_[+2]_1 4292 4.6e-05 435_[+2]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=39 8824 ( 280) CATCACCACCACCCTATCAAC 1 7160 ( 434) CTCCACCACCACCGCTTCTCT 1 268541 ( 188) CCTCCCCCTCACCCCCACTCC 1 261422 ( 453) CACCTACCCCACCGTTCCTCC 1 269114 ( 467) CATCACCTCCACTGATACTGC 1 31003 ( 137) TACCACCACCCCACCACCTCC 1 269110 ( 479) CTTCACCCACACAAAATCGAC 1 264177 ( 452) CTTCACTACAAAACAACCAAC 1 22963 ( 356) CTTCACATTCACACACACAAC 1 6504 ( 456) CCTCCACAGCACAGAATCAAC 1 38285 ( 473) CCCCCCTAACACACACTCTCA 1 4353 ( 454) CCTCACCAACACCCAACGGCA 1 8065 ( 476) TCACACATCCACCCAACCGCC 1 2733 ( 326) CGACTCCCCCAACCCTCCGAC 1 3119 ( 451) CATATCTTCCACCGCTCCTCT 1 6456 ( 468) CGTCTCTCCCACAACTTCTGC 1 5872 ( 468) CTCCACCAGCACAGCGTCAAC 1 35816 ( 461) CTTCTCTACAACACTATCACA 1 18462 ( 245) CTCCACATCCACCGACCTTGC 1 261982 ( 435) CTTCGCCTCCACAGTTCGGCT 1 4980 ( 272) CATCGCCACCCATCAACCGAC 1 7564 ( 476) CGCCACCTACACCGACACAGT 1 2779 ( 414) ACTCAACACAACCGATACTCC 1 8333 ( 111) CCCCACTGCCACCGCCCGTCT 1 1650 ( 34) CGTCGCCATCACTGCTTCCGC 1 15464 ( 473) CCTCACTCACAACCACTTGAC 1 10818 ( 338) CTTCGATGCAACTCACTCTCC 1 24754 ( 475) CACAGACCTCCCACCTCCTCC 1 7641 ( 468) CTACTCTCTCAAACTCCCTCT 1 262575 ( 462) CACAAACTACACCCATATTCC 1 22877 ( 364) TTTCACCCTCAAACCCTCGAA 1 7506 ( 13) CTCATACACAACCCACTCTTC 1 6234 ( 476) CAACGCAACAACCATTCCAAC 1 6505 ( 458) CTACAACTGCAAAAATCCAGC 1 5585 ( 440) CCTCCACTCACCAGCATCATC 1 260846 ( 115) CCTCTCCATCACATAACTACA 1 38449 ( 454) CAAGGCCTCAAAAGATTCACC 1 20846 ( 479) CAACGATTACACACCATCCCA 1 4292 ( 436) TCTCCCCTTCCCTCTTTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 31680 bayes= 10.5858 E= 5.7e-015 -335 195 -1193 -139 11 32 -125 31 -54 32 -1193 100 -135 195 -324 -1193 82 -82 -25 -39 -3 172 -1193 -1193 -135 150 -1193 -7 56 3 -224 31 -54 125 -166 -39 -35 181 -1193 -1193 174 -82 -1193 -1193 -35 181 -1193 -1193 82 86 -1193 -107 -135 118 56 -339 90 56 -1193 -58 23 32 -324 52 -77 86 -1193 70 -1193 186 -166 -139 23 -214 -25 70 11 118 -66 -239 -77 156 -1193 -58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 39 E= 5.7e-015 0.025641 0.871795 0.000000 0.102564 0.282051 0.282051 0.102564 0.333333 0.179487 0.282051 0.000000 0.538462 0.102564 0.871795 0.025641 0.000000 0.461538 0.128205 0.205128 0.205128 0.256410 0.743590 0.000000 0.000000 0.102564 0.641026 0.000000 0.256410 0.384615 0.230769 0.051282 0.333333 0.179487 0.538462 0.076923 0.205128 0.205128 0.794872 0.000000 0.000000 0.871795 0.128205 0.000000 0.000000 0.205128 0.794872 0.000000 0.000000 0.461538 0.410256 0.000000 0.128205 0.102564 0.512821 0.358974 0.025641 0.487179 0.333333 0.000000 0.179487 0.307692 0.282051 0.025641 0.384615 0.153846 0.410256 0.000000 0.435897 0.000000 0.820513 0.076923 0.102564 0.307692 0.051282 0.205128 0.435897 0.282051 0.512821 0.153846 0.051282 0.153846 0.666667 0.000000 0.179487 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- C[TAC][TC]C[AGT][CA][CT][ATC][CT][CA]A[CA][AC][CG][AC][TAC][TC]C[TAG][CA]C -------------------------------------------------------------------------------- Time 65.51 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 16 sites = 48 llr = 442 E-value = 9.9e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :4425:381291325: pos.-specific C 31::11::1:::::11 probability G 7366286:88:95727 matrix T 12122::2::::2121 bits 2.1 1.9 1.7 1.5 * Relative 1.3 * * ** Entropy 1.1 * ***** (13.3 bits) 0.9 * ******* * * 0.6 * ** ******* * * 0.4 * ** ******* * * 0.2 **************** 0.0 ---------------- Multilevel GAGGAGGAGGAGGGAG consensus CGAAG A A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 8333 66 2.56e-09 GCCGCAGCAC CAGGAGGAGGAGGGAG CTCCACCACA 4980 170 1.19e-08 TACCTCCAGC GAAAAGGAGGAGGGAG GCAAGTAAAG 6817 217 3.39e-07 GCGGTGCTGT GAGACGGAGGAGGGGG AGGGCCGCTT 40232 116 5.21e-07 GGCGAGGAAA GTGGAGGAGAAGGAAG ATATGCACAA 264177 279 9.08e-07 GGTACTACTA CGGGAGGAGGAGTTAG AAAGAAGCTT 3119 368 2.21e-06 CAAAACAACG CGGATGGTGGAGGGAG GAAATGAGGA 262207 356 2.21e-06 GCGAGGCAGT GGGAGCGAGGAGTGAG AGAGACAGAG 263061 189 3.56e-06 CTGATATTCC GATGAGGAGGAGGACG ATTGAGTGTG 6505 76 3.99e-06 ATCAGTGATT GAAGAGATGGAGAGAC CAGATGGAGT 18462 88 4.47e-06 GGAAGGGGAA GGAGAGGACAAGAGAG GTGGCCTGGA 23516 376 5.01e-06 AAGCGTTGTT GGGGGGGAAGAGGGTT GCTGTAGTCC 4409 165 5.60e-06 ATTGAACATT GCGGAGAAGGAATGAG AGTTATAGAG 33950 196 6.96e-06 GGTCGCTCAA GTGATGGAAGAGGGTG CAAAGATCAT 263007 179 6.96e-06 GGGTTGGATA TGGTAGAAGGAGGAAG TGCTGCCTTG 263006 179 6.96e-06 GGGTTGGATA TGGTAGAAGGAGGAAG TGCTGCCTTG 6243 59 7.74e-06 GCTGGTATTG GAAGAGCTGGAGGGGG TGGCAGTTGA 5135 211 7.74e-06 AACTCAACTG GATGTGGAAGAGAGAG TGATTGGAGT 34684 62 7.74e-06 TCACGACATG GGATGGAAGGAGAGAC CCATCTTTGG 2779 251 7.74e-06 TGTATTGGAT GTAAGGAAGGAAGGAG GCGTTGTGTT 1650 162 8.61e-06 GCGTATATGT GTAGAGGAAGAGAAGG CGGTTGCGTT 7564 355 9.56e-06 TCTTGTCCAA CGGGAGGTCGAGGGGG CATGCAAGTG 38285 220 1.44e-05 TCAGACACTG GAGTGGCAGGAGGGAC TGTTCTCACA 9834 405 1.75e-05 CTGTGGTAGG GGGGGGGAGAAATGGG AGGTTAAGAT 3298 20 1.75e-05 GTGAAAGCAA TTAGTGGAGGAGTGGG AGCGAAGGAC 260846 35 1.75e-05 TGGAAGGAAT GAGGATGAGGAGGTCG ATGTGAATAT 8824 3 1.93e-05 TG CCGTTGGAGGAGGGAC CATGCTTGTG 8065 316 1.93e-05 TTGTTTGGGG TTGTTGAAGGAGAGAG CCGAGTAAGA 7641 316 1.93e-05 AGGAGGCAGG GGAGAGGAGCAGAGGC CGCAAGAAAT 20846 53 1.93e-05 TGCTCGTCGG GAGGACAAAGAGGAGG TCGATGTGTC 24754 243 2.33e-05 CCGACGGGCG GTAAAGGAGAAGGAAT GTTGCGTCAA 6456 112 3.08e-05 TTAGAGACTC GGTGTCGAGGAGAGTG CCATCAAGGT 23399 51 3.08e-05 CTTGATTCTT GGAGGGAAAGAGGTTG ATTTAGTTGC 8599 1 3.37e-05 . GTGGAGGACGAGTGCC GACCAATTTG 1727 286 3.37e-05 GGATATTACA GAAGAGAATGAGAGAT GAGACGAACA 11332 175 4.03e-05 GCCACCAGAC GAGGCGATGGAGAAAT GACAGTGCGA 6234 282 4.40e-05 ATGGTTGCCT CGGAGGGAGAAGGTTG TGTCGCGTTG 36964 10 4.40e-05 CCTTGATTT GTGAGGGTGGAGCGTG GAGCCCGTCG 35036 32 4.40e-05 TGCCGAGAGG GAGTTGGAGGAGAACT TGGGTGCAAG 7506 168 4.80e-05 GTATCGTCGC CAGTGCGAGGAGGGTT TGCAGTGATA 7160 198 6.20e-05 GAGTTGAATT GAAACCGAGGTGGGAG ATAGATCAAC 261982 340 7.94e-05 TAGTTACCAG CGAGAGAAGCAATGAG AATCATTGCA 32876 398 9.32e-05 GCAGCACAAC CAAGAGGAGAAACGGG CGGTCAAGTA 35816 176 1.01e-04 AGAATGAAAC GTGGGGAAGGATTGCG TTTGGAGTAG 4292 292 1.09e-04 TTGAACCGGC GACGAGGTGGTGAGAG GCTTCTCTGT 269114 176 1.48e-04 CTGATCTACC CCGGCTAAGGAGGGTG GATTGATGAT 268541 297 1.48e-04 ACGTCTTCAG CGGGCCGAGGCGTGAG CTGTTTGGGA 261422 373 1.48e-04 AAAAATAATG GAAGAGAAAAAAAGAT GGACATTAAT 262575 321 1.59e-04 ACAAAGCGAA CAAAAGATGAAGATAG TCTCTCGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 8333 2.6e-09 65_[+3]_419 4980 1.2e-08 169_[+3]_315 6817 3.4e-07 216_[+3]_268 40232 5.2e-07 115_[+3]_369 264177 9.1e-07 278_[+3]_206 3119 2.2e-06 367_[+3]_117 262207 2.2e-06 355_[+3]_129 263061 3.6e-06 188_[+3]_296 6505 4e-06 75_[+3]_409 18462 4.5e-06 87_[+3]_397 23516 5e-06 375_[+3]_109 4409 5.6e-06 164_[+3]_320 33950 7e-06 195_[+3]_289 263007 7e-06 178_[+3]_306 263006 7e-06 178_[+3]_306 6243 7.7e-06 58_[+3]_426 5135 7.7e-06 210_[+3]_274 34684 7.7e-06 61_[+3]_423 2779 7.7e-06 250_[+3]_234 1650 8.6e-06 161_[+3]_323 7564 9.6e-06 354_[+3]_130 38285 1.4e-05 219_[+3]_265 9834 1.7e-05 404_[+3]_80 3298 1.7e-05 19_[+3]_465 260846 1.7e-05 34_[+3]_450 8824 1.9e-05 2_[+3]_482 8065 1.9e-05 315_[+3]_169 7641 1.9e-05 315_[+3]_169 20846 1.9e-05 52_[+3]_432 24754 2.3e-05 242_[+3]_242 6456 3.1e-05 111_[+3]_373 23399 3.1e-05 50_[+3]_434 8599 3.4e-05 [+3]_484 1727 3.4e-05 285_[+3]_199 11332 4e-05 174_[+3]_310 6234 4.4e-05 281_[+3]_203 36964 4.4e-05 9_[+3]_475 35036 4.4e-05 31_[+3]_453 7506 4.8e-05 167_[+3]_317 7160 6.2e-05 197_[+3]_287 261982 7.9e-05 339_[+3]_145 32876 9.3e-05 397_[+3]_87 35816 0.0001 175_[+3]_309 4292 0.00011 291_[+3]_193 269114 0.00015 175_[+3]_309 268541 0.00015 296_[+3]_188 261422 0.00015 372_[+3]_112 262575 0.00016 320_[+3]_164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=16 seqs=48 8333 ( 66) CAGGAGGAGGAGGGAG 1 4980 ( 170) GAAAAGGAGGAGGGAG 1 6817 ( 217) GAGACGGAGGAGGGGG 1 40232 ( 116) GTGGAGGAGAAGGAAG 1 264177 ( 279) CGGGAGGAGGAGTTAG 1 3119 ( 368) CGGATGGTGGAGGGAG 1 262207 ( 356) GGGAGCGAGGAGTGAG 1 263061 ( 189) GATGAGGAGGAGGACG 1 6505 ( 76) GAAGAGATGGAGAGAC 1 18462 ( 88) GGAGAGGACAAGAGAG 1 23516 ( 376) GGGGGGGAAGAGGGTT 1 4409 ( 165) GCGGAGAAGGAATGAG 1 33950 ( 196) GTGATGGAAGAGGGTG 1 263007 ( 179) TGGTAGAAGGAGGAAG 1 263006 ( 179) TGGTAGAAGGAGGAAG 1 6243 ( 59) GAAGAGCTGGAGGGGG 1 5135 ( 211) GATGTGGAAGAGAGAG 1 34684 ( 62) GGATGGAAGGAGAGAC 1 2779 ( 251) GTAAGGAAGGAAGGAG 1 1650 ( 162) GTAGAGGAAGAGAAGG 1 7564 ( 355) CGGGAGGTCGAGGGGG 1 38285 ( 220) GAGTGGCAGGAGGGAC 1 9834 ( 405) GGGGGGGAGAAATGGG 1 3298 ( 20) TTAGTGGAGGAGTGGG 1 260846 ( 35) GAGGATGAGGAGGTCG 1 8824 ( 3) CCGTTGGAGGAGGGAC 1 8065 ( 316) TTGTTGAAGGAGAGAG 1 7641 ( 316) GGAGAGGAGCAGAGGC 1 20846 ( 53) GAGGACAAAGAGGAGG 1 24754 ( 243) GTAAAGGAGAAGGAAT 1 6456 ( 112) GGTGTCGAGGAGAGTG 1 23399 ( 51) GGAGGGAAAGAGGTTG 1 8599 ( 1) GTGGAGGACGAGTGCC 1 1727 ( 286) GAAGAGAATGAGAGAT 1 11332 ( 175) GAGGCGATGGAGAAAT 1 6234 ( 282) CGGAGGGAGAAGGTTG 1 36964 ( 10) GTGAGGGTGGAGCGTG 1 35036 ( 32) GAGTTGGAGGAGAACT 1 7506 ( 168) CAGTGCGAGGAGGGTT 1 7160 ( 198) GAAACCGAGGTGGGAG 1 261982 ( 340) CGAGAGAAGCAATGAG 1 32876 ( 398) CAAGAGGAGAAACGGG 1 35816 ( 176) GTGGGGAAGGATTGCG 1 4292 ( 292) GACGAGGTGGTGAGAG 1 269114 ( 176) CCGGCTAAGGAGGGTG 1 268541 ( 297) CGGGCCGAGGCGTGAG 1 261422 ( 373) GAAGAGAAAAAAAGAT 1 262575 ( 321) CAAAAGATGAAGATAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 32010 bayes= 9.82714 E= 9.9e-009 -1223 15 145 -169 60 -185 45 -37 44 -344 121 -210 -19 -1223 131 -69 93 -112 -9 -69 -1223 -85 178 -269 35 -244 136 -1223 167 -1223 -1223 -69 -84 -185 166 -369 -65 -244 170 -1223 184 -344 -1223 -269 -107 -1223 181 -369 16 -244 98 -52 -48 -1223 154 -137 105 -112 -38 -69 -1223 -85 158 -88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 48 E= 9.9e-009 0.000000 0.250000 0.666667 0.083333 0.395833 0.062500 0.333333 0.208333 0.354167 0.020833 0.562500 0.062500 0.229167 0.000000 0.604167 0.166667 0.500000 0.104167 0.229167 0.166667 0.000000 0.125000 0.833333 0.041667 0.333333 0.041667 0.625000 0.000000 0.833333 0.000000 0.000000 0.166667 0.145833 0.062500 0.770833 0.020833 0.166667 0.041667 0.791667 0.000000 0.937500 0.020833 0.000000 0.041667 0.125000 0.000000 0.854167 0.020833 0.291667 0.041667 0.479167 0.187500 0.187500 0.000000 0.708333 0.104167 0.541667 0.104167 0.187500 0.166667 0.000000 0.125000 0.729167 0.145833 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [GC][AGT][GA][GA][AG]G[GA]AGGAG[GA]GAG -------------------------------------------------------------------------------- Time 96.95 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10818 3.66e-05 92_[+1(6.54e-07)]_225_\ [+2(7.71e-06)]_142 11332 4.37e-05 174_[+3(4.03e-05)]_65_\ [+1(2.80e-07)]_225 15464 2.59e-03 47_[+1(3.52e-05)]_405_\ [+2(7.71e-06)]_7 1650 4.89e-05 33_[+2(7.71e-06)]_107_\ [+3(8.61e-06)]_12_[+1(5.38e-05)]_291 1727 3.65e-02 285_[+3(3.37e-05)]_199 18462 5.82e-07 87_[+3(4.47e-06)]_141_\ [+2(1.83e-06)]_186_[+1(2.95e-06)]_29 2045 3.45e-01 5_[+2(7.35e-05)]_3_[+2(7.35e-05)]_3_\ [+2(7.35e-05)]_3_[+2(7.35e-05)]_3_[+2(7.35e-05)]_3_[+2(7.35e-05)]_3_\ [+2(7.35e-05)]_3_[+2(7.35e-05)]_3_[+2(7.35e-05)]_3_[+2(7.35e-05)]_3_\ [+2(7.35e-05)]_3_[+2(7.35e-05)]_3_[+2(7.35e-05)]_3_[+2(7.35e-05)]_3_\ [+2(7.35e-05)]_3_[+2(7.35e-05)]_3_[+2(7.35e-05)]_3_[+2(7.35e-05)]_3_\ [+2(7.35e-05)]_42 20846 5.19e-06 52_[+3(1.93e-05)]_42_[+1(5.17e-07)]_\ 18_[+3(2.56e-05)]_314_[+2(2.81e-05)]_1 22877 6.47e-02 363_[+2(1.39e-05)]_116 22963 4.74e-03 355_[+2(5.41e-07)]_124 23399 9.96e-03 50_[+3(3.08e-05)]_434 23516 3.52e-02 375_[+3(5.01e-06)]_109 24754 1.80e-05 195_[+1(5.77e-06)]_27_\ [+3(2.33e-05)]_216_[+2(8.42e-06)]_5 25077 1.22e-03 310_[+1(8.42e-08)]_170 260846 4.55e-03 34_[+3(1.75e-05)]_64_[+2(2.24e-05)]_\ 365 261422 4.97e-05 452_[+2(8.79e-08)]_27 261982 6.48e-04 339_[+3(7.94e-05)]_79_\ [+2(2.03e-06)]_45 262207 6.41e-04 92_[+1(5.38e-05)]_243_\ [+3(2.21e-06)]_33_[+3(3.69e-05)]_80 262575 5.06e-03 461_[+2(1.39e-05)]_18 263006 1.06e-06 146_[+1(9.04e-06)]_12_\ [+3(6.96e-06)]_57_[+1(3.83e-09)]_229 263007 1.06e-06 146_[+1(9.04e-06)]_12_\ [+3(6.96e-06)]_57_[+1(3.83e-09)]_229 263061 1.28e-05 124_[+1(6.54e-07)]_44_\ [+3(3.56e-06)]_163_[+1(4.07e-05)]_113 264177 1.11e-08 238_[+1(9.22e-07)]_20_\ [+3(9.08e-07)]_157_[+2(3.77e-07)]_28 268541 4.31e-06 187_[+2(7.61e-08)]_188_\ [+1(2.07e-05)]_84 269110 1.77e-05 333_[+1(5.77e-06)]_125_\ [+2(2.27e-07)]_1 269114 1.01e-05 198_[+1(4.07e-05)]_226_\ [+2(8.34e-05)]_1_[+2(1.01e-07)]_13 2733 1.34e-05 24_[+2(6.45e-06)]_94_[+3(2.33e-05)]_\ 170_[+2(1.34e-06)]_154 2779 1.54e-05 176_[+1(2.07e-05)]_54_\ [+3(7.74e-06)]_147_[+2(5.90e-06)]_66 31003 5.48e-03 136_[+2(2.27e-07)]_343 3119 7.56e-05 263_[+3(1.06e-05)]_88_\ [+3(2.21e-06)]_67_[+2(1.65e-06)]_29 32295 7.29e-03 370_[+1(1.17e-05)]_110 32876 8.05e-02 397_[+3(9.32e-05)]_87 3298 6.61e-05 19_[+3(1.75e-05)]_35_[+1(1.03e-06)]_\ 410 33094 7.08e-01 500 33950 2.78e-03 195_[+3(6.96e-06)]_104_\ [+1(3.04e-05)]_165 34684 2.97e-03 61_[+3(7.74e-06)]_230_\ [+1(3.79e-05)]_173 35036 5.52e-04 31_[+3(4.40e-05)]_325_\ [+1(2.41e-06)]_108 35816 5.91e-06 122_[+1(1.77e-06)]_318_\ [+2(1.83e-06)]_19 36964 2.52e-05 9_[+3(4.40e-05)]_64_[+1(2.47e-07)]_\ 391 38285 2.18e-04 219_[+3(1.44e-05)]_237_\ [+2(7.67e-07)]_7 38449 1.52e-03 387_[+1(1.63e-05)]_46_\ [+2(2.42e-05)]_26 40232 1.63e-04 55_[+1(1.50e-05)]_16_[+3(3.56e-06)]_\ 8_[+3(5.21e-07)]_98_[+3(5.70e-05)]_21_[+3(6.20e-05)]_218 4292 3.44e-04 76_[+1(2.82e-05)]_88_[+1(6.93e-06)]_\ 22_[+1(4.07e-05)]_189_[+2(4.63e-05)]_44 4353 7.90e-06 62_[+1(3.59e-07)]_371_\ [+2(9.61e-07)]_26 4409 6.21e-04 164_[+3(5.60e-06)]_281_\ [+1(2.24e-05)]_19 4460 7.81e-01 500 4980 7.48e-09 128_[+2(2.61e-05)]_20_\ [+3(1.19e-08)]_86_[+2(2.49e-06)]_144_[+1(6.93e-06)]_44 5135 3.20e-02 210_[+3(7.74e-06)]_274 5585 5.50e-05 229_[+1(9.69e-08)]_190_\ [+2(2.07e-05)]_40 5872 1.72e-04 44_[+1(4.79e-06)]_403_\ [+2(1.83e-06)]_12 6234 4.94e-03 281_[+3(4.40e-05)]_178_\ [+2(1.77e-05)]_4 6243 1.55e-06 58_[+3(7.74e-06)]_5_[+1(4.64e-09)]_\ 233_[+1(2.82e-05)]_148 6456 1.28e-06 111_[+3(3.08e-05)]_56_\ [+1(1.03e-06)]_264_[+2(1.83e-06)]_12 6504 3.08e-03 455_[+2(7.67e-07)]_24 6505 9.21e-06 75_[+3(3.99e-06)]_139_\ [+1(6.93e-06)]_6_[+3(9.32e-05)]_185_[+2(1.92e-05)]_22 6817 5.33e-06 216_[+3(3.39e-07)]_11_\ [+1(2.67e-06)]_237 7160 4.16e-08 197_[+3(6.20e-05)]_39_\ [+1(4.79e-06)]_161_[+2(4.55e-09)]_25_[+2(4.63e-05)] 7506 8.02e-06 12_[+2(1.64e-05)]_134_\ [+3(4.80e-05)]_59_[+1(5.82e-07)]_26_[+1(5.02e-05)]_192 7564 3.23e-09 253_[+1(1.77e-09)]_4_[+1(6.15e-05)]_\ 57_[+3(9.56e-06)]_105_[+2(4.90e-06)]_4 7641 1.35e-03 315_[+3(1.93e-05)]_136_\ [+2(1.29e-05)]_12 8065 2.04e-04 315_[+3(1.93e-05)]_144_\ [+2(1.34e-06)]_4 8333 4.60e-07 65_[+3(2.56e-09)]_29_[+2(7.71e-06)]_\ 134_[+3(1.52e-06)]_219 8599 2.22e-03 [+3(3.37e-05)]_259_[+1(7.02e-05)]_\ 124_[+1(4.79e-06)]_61 8824 7.63e-07 2_[+3(1.93e-05)]_261_[+2(2.54e-09)]_\ 200 942 4.59e-04 224_[+1(5.47e-08)]_256 9834 3.28e-02 404_[+3(1.75e-05)]_80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************