******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/21/21.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 1020 1.0000 500 10659 1.0000 500 10847 1.0000 500 11273 1.0000 500 12091 1.0000 500 1665 1.0000 500 17362 1.0000 500 17484 1.0000 500 2039 1.0000 500 21806 1.0000 500 22511 1.0000 500 22810 1.0000 500 25369 1.0000 500 25953 1.0000 500 261935 1.0000 500 263661 1.0000 500 31294 1.0000 500 3142 1.0000 500 32153 1.0000 500 3344 1.0000 500 3345 1.0000 500 37306 1.0000 500 3752 1.0000 500 3845 1.0000 500 40021 1.0000 500 40801 1.0000 500 4363 1.0000 500 5276 1.0000 500 5555 1.0000 500 5687 1.0000 500 5866 1.0000 500 7458 1.0000 500 8311 1.0000 500 8449 1.0000 500 9168 1.0000 500 9489 1.0000 500 bd953 1.0000 440 bd955 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/21/21.seqs.fa -oc motifs/21 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 38 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 18940 N= 38 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.259 C 0.229 G 0.240 T 0.273 Background letter frequencies (from dataset with add-one prior applied): A 0.259 C 0.229 G 0.240 T 0.273 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 20 llr = 267 E-value = 2.0e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 324156:65:2:6224114:2 pos.-specific C 661944a:592a158194167 probability G :33121::111:::::11152 matrix T 2:3::1:4::6:4416:55:: bits 2.1 * * 1.9 * * 1.7 * * * 1.5 * * * * Relative 1.3 * * * * * * Entropy 1.1 * * * * * * * (19.3 bits) 0.9 * ** * * * * ** 0.6 ** ******* ****** ** 0.4 ** ****************** 0.2 ********************* 0.0 --------------------- Multilevel CCACAACAACTCACCTCTTCC consensus AGT CC TC A TT A CAGG sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- bd955 236 4.37e-12 ATGACCACGA CCACCACAACTCACCTCCACC TCTATTCCTC bd953 176 4.37e-12 ATGACCACGA CCACCACAACTCACCTCCACC TCTATTCCTC 21806 428 4.74e-09 AAAACCCCTG CCTCCACAACTCTCCACAACC AACTCCATCG 5555 454 3.56e-08 ATCGCATCCT CCTCCCCTCCTCTTCTCTTGA ACTCTTTTCT 17484 465 4.49e-08 CCCCGACAGG AGTCAACAACACACCTCTACG TCCCTCTGCT 8311 385 7.06e-08 GTATTCTCTC AGGCACCACCTCATCTCATGC TGTCGTCACA 3845 234 1.08e-07 ATCTAAACGC CCACGCCACCTCACCCCTGGC TACTTCGGCT 3344 480 1.08e-07 GCAATATTTT ACGCAACTACTCTACACCGCC 12091 119 3.15e-07 TACAGCAACC CAACAACACGTCATATCTAGC TCACCTCTCA 40021 269 4.12e-07 GCTTGTCGGG CGTCAACTACCCACCACGTCG GTCTAAGGGG 263661 342 4.12e-07 CACGTCACCT TCACGCCTCCTCTCTTCCACC GTCCTCACAC 10847 316 4.49e-07 TTGCTTTGCT CAGCAACTGCCCTTCACTAGC TGCAGCAACC 1020 449 4.49e-07 ACTTTTCGTT CCACACCACCTCATCAATCCG CTCGTCTCTC 17362 50 1.38e-06 CCACTGAAGT AGTCCCCTCCACATCTGCTGC GTTGCTCTTC 1665 315 1.49e-06 TGACAACCGG CCCCATCAACGCTTCTCCTCC GAGTTAGTGT 25953 221 1.60e-06 TCACTCACAA TCACCACAACTCCAAACTTGA GAACTCTAGT 22810 480 1.85e-06 GACCACCACG TCGACACAAGACACCTCCACC 9489 360 2.61e-06 AGATAACCAC CATCACCACCACCACAATTGC AACAACTTTC 2039 207 4.38e-06 GAGCAAACCA TGACGACTGCTCTCAACTTGA CGCACCAATA 261935 280 4.65e-06 CGCCCCCCGA ACGGAGCTCCCCACCTCCTCG GTGCCACACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- bd955 4.4e-12 235_[+1]_244 bd953 4.4e-12 175_[+1]_244 21806 4.7e-09 427_[+1]_52 5555 3.6e-08 453_[+1]_26 17484 4.5e-08 464_[+1]_15 8311 7.1e-08 384_[+1]_95 3845 1.1e-07 233_[+1]_246 3344 1.1e-07 479_[+1] 12091 3.2e-07 118_[+1]_361 40021 4.1e-07 268_[+1]_211 263661 4.1e-07 341_[+1]_138 10847 4.5e-07 315_[+1]_164 1020 4.5e-07 448_[+1]_31 17362 1.4e-06 49_[+1]_430 1665 1.5e-06 314_[+1]_165 25953 1.6e-06 220_[+1]_259 22810 1.8e-06 479_[+1] 9489 2.6e-06 359_[+1]_120 2039 4.4e-06 206_[+1]_273 261935 4.7e-06 279_[+1]_200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=20 bd955 ( 236) CCACCACAACTCACCTCCACC 1 bd953 ( 176) CCACCACAACTCACCTCCACC 1 21806 ( 428) CCTCCACAACTCTCCACAACC 1 5555 ( 454) CCTCCCCTCCTCTTCTCTTGA 1 17484 ( 465) AGTCAACAACACACCTCTACG 1 8311 ( 385) AGGCACCACCTCATCTCATGC 1 3845 ( 234) CCACGCCACCTCACCCCTGGC 1 3344 ( 480) ACGCAACTACTCTACACCGCC 1 12091 ( 119) CAACAACACGTCATATCTAGC 1 40021 ( 269) CGTCAACTACCCACCACGTCG 1 263661 ( 342) TCACGCCTCCTCTCTTCCACC 1 10847 ( 316) CAGCAACTGCCCTTCACTAGC 1 1020 ( 449) CCACACCACCTCATCAATCCG 1 17362 ( 50) AGTCCCCTCCACATCTGCTGC 1 1665 ( 315) CCCCATCAACGCTTCTCCTCC 1 25953 ( 221) TCACCACAACTCCAAACTTGA 1 22810 ( 480) TCGACACAAGACACCTCCACC 1 9489 ( 360) CATCACCACCACCACAATTGC 1 2039 ( 207) TGACGACTGCTCTCAACTTGA 1 261935 ( 280) ACGGAGCTCCCCACCTCCTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 18180 bayes= 11.3015 E= 2.0e-011 -5 126 -1097 -45 -79 139 6 -1097 63 -219 6 14 -237 197 -226 -1097 95 61 -68 -1097 109 61 -226 -244 -1097 213 -1097 -1097 121 -1097 -1097 55 80 97 -126 -1097 -1097 197 -126 -1097 -37 -61 -226 114 -1097 213 -1097 -1097 109 -119 -1097 36 -79 113 -1097 36 -79 180 -1097 -244 63 -219 -1097 101 -137 189 -226 -1097 -137 80 -226 72 63 -219 -126 72 -1097 126 91 -1097 -79 150 -26 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 20 E= 2.0e-011 0.250000 0.550000 0.000000 0.200000 0.150000 0.600000 0.250000 0.000000 0.400000 0.050000 0.250000 0.300000 0.050000 0.900000 0.050000 0.000000 0.500000 0.350000 0.150000 0.000000 0.550000 0.350000 0.050000 0.050000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.400000 0.450000 0.450000 0.100000 0.000000 0.000000 0.900000 0.100000 0.000000 0.200000 0.150000 0.050000 0.600000 0.000000 1.000000 0.000000 0.000000 0.550000 0.100000 0.000000 0.350000 0.150000 0.500000 0.000000 0.350000 0.150000 0.800000 0.000000 0.050000 0.400000 0.050000 0.000000 0.550000 0.100000 0.850000 0.050000 0.000000 0.100000 0.400000 0.050000 0.450000 0.400000 0.050000 0.100000 0.450000 0.000000 0.550000 0.450000 0.000000 0.150000 0.650000 0.200000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CAT][CG][ATG]C[AC][AC]C[AT][AC]C[TA]C[AT][CT]C[TA]C[TC][TA][CG][CG] -------------------------------------------------------------------------------- Time 12.05 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 20 sites = 10 llr = 167 E-value = 8.8e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 114:131::::::11::::: pos.-specific C 9:2a1:7:59:1a2:42129 probability G :9::71:a::8::5:115:: matrix T ::4:162:5129:2957481 bits 2.1 * * * 1.9 * * * 1.7 * * * * * * 1.5 ** * * * ** * * Relative 1.3 ** * * **** * ** Entropy 1.1 ** * ****** * ** (24.1 bits) 0.9 ** * ******* * * ** 0.6 ** ********** ****** 0.4 ************* ****** 0.2 ******************** 0.0 -------------------- Multilevel CGACGTCGCCGTCGTTTGTC consensus T AT T T C CCTC sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- bd955 158 9.43e-12 CAAAGACTGT CGTCGTCGCCGTCGTCTTTC CACTGCCTGT bd953 98 9.43e-12 CAAAGACTGT CGTCGTCGCCGTCGTCTTTC CACTGCCTGT 5555 402 2.28e-10 GGACTCACCA CGTCGTCGTCGTCGTCGGTC GGCAGTGCAC 261935 377 1.42e-09 GTATCGTTCT CGCCCTCGCCGTCTTTTGTC GGGCAGTTCG 32153 108 1.06e-08 GGGATGATCG CGACTTTGTCTTCGTTTGTC TCTGCCCGAT 3345 335 3.18e-08 CTTTGTGTGG CGTCGAAGTCGTCCATTTTC ACTGCATTTG 25953 170 9.19e-08 ACTTGTGTAT CGCCGACGCCTTCCTGCCTC CCCAGTCTTC 5276 236 9.76e-08 GATGTGTCGT CGACGGCGCTGTCGTCTGCT TCGTGTGTGG 4363 451 1.04e-07 CCGCTTAACG CAACGACGTCGCCATTCGTC ATCACAGTGC 21806 254 1.55e-07 AATTCATTTA AGACATTGTCGTCTTTTTCC TCGCCGGTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- bd955 9.4e-12 157_[+2]_323 bd953 9.4e-12 97_[+2]_323 5555 2.3e-10 401_[+2]_79 261935 1.4e-09 376_[+2]_104 32153 1.1e-08 107_[+2]_373 3345 3.2e-08 334_[+2]_146 25953 9.2e-08 169_[+2]_311 5276 9.8e-08 235_[+2]_245 4363 1e-07 450_[+2]_30 21806 1.5e-07 253_[+2]_227 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=20 seqs=10 bd955 ( 158) CGTCGTCGCCGTCGTCTTTC 1 bd953 ( 98) CGTCGTCGCCGTCGTCTTTC 1 5555 ( 402) CGTCGTCGTCGTCGTCGGTC 1 261935 ( 377) CGCCCTCGCCGTCTTTTGTC 1 32153 ( 108) CGACTTTGTCTTCGTTTGTC 1 3345 ( 335) CGTCGAAGTCGTCCATTTTC 1 25953 ( 170) CGCCGACGCCTTCCTGCCTC 1 5276 ( 236) CGACGGCGCTGTCGTCTGCT 1 4363 ( 451) CAACGACGTCGCCATTCGTC 1 21806 ( 254) AGACATTGTCGTCTTTTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 18218 bayes= 11.7742 E= 8.8e-006 -137 197 -997 -997 -137 -997 191 -997 63 -20 -997 55 -997 213 -997 -997 -137 -119 155 -144 21 -997 -126 114 -137 161 -997 -45 -997 -997 206 -997 -997 113 -997 87 -997 197 -997 -144 -997 -997 174 -45 -997 -119 -997 172 -997 213 -997 -997 -137 -20 106 -45 -137 -997 -997 172 -997 80 -126 87 -997 -20 -126 136 -997 -119 106 55 -997 -20 -997 155 -997 197 -997 -144 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 10 E= 8.8e-006 0.100000 0.900000 0.000000 0.000000 0.100000 0.000000 0.900000 0.000000 0.400000 0.200000 0.000000 0.400000 0.000000 1.000000 0.000000 0.000000 0.100000 0.100000 0.700000 0.100000 0.300000 0.000000 0.100000 0.600000 0.100000 0.700000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.900000 0.000000 0.100000 0.000000 0.000000 0.800000 0.200000 0.000000 0.100000 0.000000 0.900000 0.000000 1.000000 0.000000 0.000000 0.100000 0.200000 0.500000 0.200000 0.100000 0.000000 0.000000 0.900000 0.000000 0.400000 0.100000 0.500000 0.000000 0.200000 0.100000 0.700000 0.000000 0.100000 0.500000 0.400000 0.000000 0.200000 0.000000 0.800000 0.000000 0.900000 0.000000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- CG[ATC]CG[TA][CT]G[CT]C[GT]TC[GCT]T[TC][TC][GT][TC]C -------------------------------------------------------------------------------- Time 23.39 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 12 llr = 185 E-value = 1.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :9:85:128348166:5286: pos.-specific C 2:1:3:33:::32::::8::2 probability G 81922a45276:544931246 matrix T ::::::31::::3::12:::3 bits 2.1 * 1.9 * 1.7 * * * 1.5 *** * * Relative 1.3 **** * * * * * Entropy 1.1 **** * **** *** *** (22.2 bits) 0.9 **** * **** *** *** 0.6 ****** **** *** **** 0.4 ****** **** ******** 0.2 ********************* 0.0 --------------------- Multilevel GAGAAGGGAGGAGAAGACAAG consensus C CC AACTGG G GT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 37306 110 4.68e-10 ACTGTACAGA GAGAAGCCAGGACAGGACAAG TTCCGTCCGA 32153 321 2.91e-09 TTGGGTTGAC GAGAAGTGAAGCGAAGTCAAG GTTGAACCGT 25369 165 1.42e-08 TGGTCAGAGT CAGAGGAGAGGAGAGGACAGG GGCGGAATAC 17484 249 1.73e-08 GCACTGTTGT GAGAAGCAAGGACAAGGAAGG CCACGACGAC 11273 207 2.10e-08 CGGCGGAGGT GACGAGGGAGGCGAGGACAAG CTTCATGTTG 5687 452 4.00e-08 ATGGAATGAG GAGAAGTTAGACGAGGTCAGG GTAGCTAGCT 31294 113 4.75e-08 CCATGACGAC GAGGAGGAAGAAGAAGACGGT CGAACTGACA bd955 313 5.62e-08 GGAATTTTAG GAGACGGCGAAATGAGGCAAT AGCGGTGATG bd953 253 5.62e-08 GGAATTTTAG GAGACGGCGAAATGAGGCAAT AGCGGTGATG 4363 67 1.31e-07 TGAAGAAGCA GAGACGTGAGGATGATAGAGG AAGGAGGTTG 3142 259 1.97e-07 TGATGCGACG CAGACGCGAGGAAGGGACGAC ACGTACGCAT 7458 424 2.72e-07 GTGTCCCGAC GGGAGGGGAAAAGGAGGAAAC TACTGTCTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 37306 4.7e-10 109_[+3]_370 32153 2.9e-09 320_[+3]_159 25369 1.4e-08 164_[+3]_315 17484 1.7e-08 248_[+3]_231 11273 2.1e-08 206_[+3]_273 5687 4e-08 451_[+3]_28 31294 4.7e-08 112_[+3]_367 bd955 5.6e-08 312_[+3]_167 bd953 5.6e-08 252_[+3]_167 4363 1.3e-07 66_[+3]_413 3142 2e-07 258_[+3]_221 7458 2.7e-07 423_[+3]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=12 37306 ( 110) GAGAAGCCAGGACAGGACAAG 1 32153 ( 321) GAGAAGTGAAGCGAAGTCAAG 1 25369 ( 165) CAGAGGAGAGGAGAGGACAGG 1 17484 ( 249) GAGAAGCAAGGACAAGGAAGG 1 11273 ( 207) GACGAGGGAGGCGAGGACAAG 1 5687 ( 452) GAGAAGTTAGACGAGGTCAGG 1 31294 ( 113) GAGGAGGAAGAAGAAGACGGT 1 bd955 ( 313) GAGACGGCGAAATGAGGCAAT 1 bd953 ( 253) GAGACGGCGAAATGAGGCAAT 1 4363 ( 67) GAGACGTGAGGATGATAGAGG 1 3142 ( 259) CAGACGCGAGGAAGGGACGAC 1 7458 ( 424) GGGAGGGGAAAAGGAGGAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 18180 bayes= 11.0119 E= 1.2e-003 -1023 -46 180 -1023 182 -1023 -152 -1023 -1023 -146 193 -1023 169 -1023 -52 -1023 95 54 -52 -1023 -1023 -1023 206 -1023 -163 13 80 -13 -63 13 106 -171 169 -1023 -52 -1023 37 -1023 148 -1023 69 -1023 128 -1023 154 13 -1023 -1023 -163 -46 106 -13 117 -1023 80 -1023 117 -1023 80 -1023 -1023 -1023 193 -171 95 -1023 48 -71 -63 171 -152 -1023 169 -1023 -52 -1023 117 -1023 80 -1023 -1023 -46 128 -13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 12 E= 1.2e-003 0.000000 0.166667 0.833333 0.000000 0.916667 0.000000 0.083333 0.000000 0.000000 0.083333 0.916667 0.000000 0.833333 0.000000 0.166667 0.000000 0.500000 0.333333 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.083333 0.250000 0.416667 0.250000 0.166667 0.250000 0.500000 0.083333 0.833333 0.000000 0.166667 0.000000 0.333333 0.000000 0.666667 0.000000 0.416667 0.000000 0.583333 0.000000 0.750000 0.250000 0.000000 0.000000 0.083333 0.166667 0.500000 0.250000 0.583333 0.000000 0.416667 0.000000 0.583333 0.000000 0.416667 0.000000 0.000000 0.000000 0.916667 0.083333 0.500000 0.000000 0.333333 0.166667 0.166667 0.750000 0.083333 0.000000 0.833333 0.000000 0.166667 0.000000 0.583333 0.000000 0.416667 0.000000 0.000000 0.166667 0.583333 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- GAGA[AC]G[GCT][GC]A[GA][GA][AC][GT][AG][AG]G[AG]CA[AG][GT] -------------------------------------------------------------------------------- Time 34.40 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 1020 3.08e-03 448_[+1(4.49e-07)]_31 10659 3.73e-02 500 10847 1.78e-03 315_[+1(4.49e-07)]_164 11273 3.62e-04 101_[+3(2.27e-06)]_84_\ [+3(2.10e-08)]_273 12091 1.05e-03 118_[+1(3.15e-07)]_361 1665 1.15e-02 314_[+1(1.49e-06)]_165 17362 4.42e-03 49_[+1(1.38e-06)]_430 17484 1.89e-08 248_[+3(1.73e-08)]_195_\ [+1(4.49e-08)]_15 2039 4.35e-03 206_[+1(4.38e-06)]_273 21806 1.36e-08 253_[+2(1.55e-07)]_154_\ [+1(4.74e-09)]_52 22511 3.57e-02 500 22810 1.31e-03 390_[+3(8.02e-05)]_68_\ [+1(1.85e-06)] 25369 2.36e-04 113_[+3(7.02e-06)]_30_\ [+3(1.42e-08)]_315 25953 3.68e-06 169_[+2(9.19e-08)]_31_\ [+1(1.60e-06)]_259 261935 5.29e-08 279_[+1(4.65e-06)]_76_\ [+2(1.42e-09)]_104 263661 5.63e-04 126_[+2(9.60e-05)]_195_\ [+1(4.12e-07)]_138 31294 5.54e-04 112_[+3(4.75e-08)]_367 3142 2.07e-03 258_[+3(1.97e-07)]_221 32153 2.53e-09 107_[+2(1.06e-08)]_193_\ [+3(2.91e-09)]_159 3344 8.87e-04 479_[+1(1.08e-07)] 3345 2.26e-04 334_[+2(3.18e-08)]_146 37306 2.92e-06 109_[+3(4.68e-10)]_370 3752 5.10e-01 500 3845 9.55e-04 233_[+1(1.08e-07)]_246 40021 2.18e-03 268_[+1(4.12e-07)]_211 40801 3.03e-01 500 4363 1.53e-07 66_[+3(1.31e-07)]_363_\ [+2(1.04e-07)]_30 5276 1.20e-03 169_[+2(7.19e-05)]_46_\ [+2(9.76e-08)]_245 5555 1.75e-10 401_[+2(2.28e-10)]_32_\ [+1(3.56e-08)]_26 5687 1.05e-03 451_[+3(4.00e-08)]_28 5866 8.70e-01 500 7458 1.27e-03 265_[+3(4.90e-05)]_137_\ [+3(2.72e-07)]_56 8311 3.30e-04 384_[+1(7.06e-08)]_95 8449 3.25e-01 500 9168 3.37e-01 500 9489 6.20e-03 359_[+1(2.61e-06)]_120 bd953 2.25e-19 97_[+2(9.43e-12)]_58_[+1(4.37e-12)]_\ 56_[+3(5.62e-08)]_167 bd955 3.30e-19 157_[+2(9.43e-12)]_58_\ [+1(4.37e-12)]_56_[+3(5.62e-08)]_167 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************