******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/210/210.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 11093 1.0000 500 11185 1.0000 500 11337 1.0000 500 11733 1.0000 500 11734 1.0000 500 11737 1.0000 500 21327 1.0000 500 23726 1.0000 500 25387 1.0000 500 2577 1.0000 500 25789 1.0000 500 25933 1.0000 500 268773 1.0000 500 269456 1.0000 500 29244 1.0000 500 3322 1.0000 500 35409 1.0000 500 3581 1.0000 500 37976 1.0000 500 39299 1.0000 500 39497 1.0000 500 4002 1.0000 500 41291 1.0000 500 41548 1.0000 500 7060 1.0000 500 7510 1.0000 500 7906 1.0000 500 8701 1.0000 500 9795 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/210/210.seqs.fa -oc motifs/210 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 29 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 14500 N= 29 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.264 C 0.228 G 0.248 T 0.260 Background letter frequencies (from dataset with add-one prior applied): A 0.264 C 0.228 G 0.248 T 0.260 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 25 llr = 290 E-value = 4.6e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 25:2322:4421723612:53 pos.-specific C 7:6635595369287383827 probability G ::2::31::22::::::::1: matrix T 14224:2112::1::11523: bits 2.1 1.9 1.7 1.5 * * * Relative 1.3 * * * * * Entropy 1.1 * * ** * * * (16.7 bits) 0.9 * * * ***** * * * 0.6 **** ** ******* * * 0.4 **** * ** ********* * 0.2 ********* *********** 0.0 --------------------- Multilevel CACCTCCCCACCACCACTCAC consensus ATGAAGT ACA C AC CTTA sequence T C G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 7906 39 7.02e-10 CCCTCACCTC CTCCTCGCCACCACCACCCTC TGCCTCATAC 11093 408 1.53e-08 ACTACCAATC AATCTCACCCCCACCACTCTC TGCACAAAAA 11734 409 2.02e-08 CATTTCCTTC CTCCCCTCCTGCACCCCTCTC CGCGACATAA 25387 440 5.11e-08 GCCGCTCCAC CTTCCGCCAGACACCACACAC ACATCTCATA 35409 464 5.81e-08 GCTTTTGGAT CTTTGCCCCCCCACCACTCAC GTTCACACAA 39497 464 1.07e-07 CCGCCTACAA CACTACACCAACACAACCCAC AATATAATAC 21327 473 1.36e-07 ACGTAATAAA CACCCCCCCACCCCAACACGA CGTGACC 7510 447 2.39e-07 AGCAGTCCAG CTTCCACCACACACCACACCC ACGGTAACCA 25933 477 2.98e-07 CGCCGACCGT CAGCTTCCCACCACAACTTTC ATC 29244 460 5.05e-07 TTTGCTTGGA TTCCACCTCACCAACACTCAC CAGCCGCATG 11185 315 5.60e-07 ACGCAGCTGA CTGCCGACAACAACCCCTCAA CTGAATCTCA 268773 470 7.57e-07 GTGCCGCCAC CTCAAGCCCGCCCCCAAACAC GGCGACAACG 41548 434 1.62e-06 AAATCATATA AAGCAACCAGCCCCAACCCAA CGCTTCCACC 269456 354 2.54e-06 TACGTTGATG CACCTCTCATGCACACCCTCA ACTTCGTGTT 2577 449 3.29e-06 TTGCTCTGGT CACTTGCCATCCACCTTTCGC ACCTACATAG 8701 410 4.23e-06 ACTTCGTGAC ACTCACCCAACCACACCGCAC CGGGCAATTG 4002 461 4.98e-06 AATCTTTGGG CACCTGCCACCCCCTCACTAC ACAAGCCTAC 25789 205 6.33e-06 AGGGAGTCTC ATCCTCTCACACAACTCTTCC AGCCAACCCA 9795 462 8.63e-06 GGTCGCCAAC CAGACATCAGCAACCCCTTTC CGAAGATCCA 41291 112 9.31e-06 TAGCATCGAA CAGAAGTCTCCCTCACCTCAC AGATAAAATC 23726 357 9.31e-06 CTTCGTCGTC CTCCAAACCAGCCCCAGCCAA GCCAAGCCAC 37976 331 1.00e-05 TGCTGCCATT AACTTCGCCGGCAACTCTCTC GTGCAGCAGT 3322 215 1.55e-05 CTTTCTTGGC AACACGCCTCCCAACATTCAA TCGGTTCAAC 11337 214 3.24e-05 TATCAAGACA TACCTCGAAAACTCCACCCTC CACCCCCTGT 11737 24 3.46e-05 TGAATTTGCA CTCAACCTCTCAACCCCATCA GATATCCAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 7906 7e-10 38_[+1]_441 11093 1.5e-08 407_[+1]_72 11734 2e-08 408_[+1]_71 25387 5.1e-08 439_[+1]_40 35409 5.8e-08 463_[+1]_16 39497 1.1e-07 463_[+1]_16 21327 1.4e-07 472_[+1]_7 7510 2.4e-07 446_[+1]_33 25933 3e-07 476_[+1]_3 29244 5.1e-07 459_[+1]_20 11185 5.6e-07 314_[+1]_165 268773 7.6e-07 469_[+1]_10 41548 1.6e-06 433_[+1]_46 269456 2.5e-06 353_[+1]_126 2577 3.3e-06 448_[+1]_31 8701 4.2e-06 409_[+1]_70 4002 5e-06 460_[+1]_19 25789 6.3e-06 204_[+1]_275 9795 8.6e-06 461_[+1]_18 41291 9.3e-06 111_[+1]_368 23726 9.3e-06 356_[+1]_123 37976 1e-05 330_[+1]_149 3322 1.6e-05 214_[+1]_265 11337 3.2e-05 213_[+1]_266 11737 3.5e-05 23_[+1]_456 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=25 7906 ( 39) CTCCTCGCCACCACCACCCTC 1 11093 ( 408) AATCTCACCCCCACCACTCTC 1 11734 ( 409) CTCCCCTCCTGCACCCCTCTC 1 25387 ( 440) CTTCCGCCAGACACCACACAC 1 35409 ( 464) CTTTGCCCCCCCACCACTCAC 1 39497 ( 464) CACTACACCAACACAACCCAC 1 21327 ( 473) CACCCCCCCACCCCAACACGA 1 7510 ( 447) CTTCCACCACACACCACACCC 1 25933 ( 477) CAGCTTCCCACCACAACTTTC 1 29244 ( 460) TTCCACCTCACCAACACTCAC 1 11185 ( 315) CTGCCGACAACAACCCCTCAA 1 268773 ( 470) CTCAAGCCCGCCCCCAAACAC 1 41548 ( 434) AAGCAACCAGCCCCAACCCAA 1 269456 ( 354) CACCTCTCATGCACACCCTCA 1 2577 ( 449) CACTTGCCATCCACCTTTCGC 1 8701 ( 410) ACTCACCCAACCACACCGCAC 1 4002 ( 461) CACCTGCCACCCCCTCACTAC 1 25789 ( 205) ATCCTCTCACACAACTCTTCC 1 9795 ( 462) CAGACATCAGCAACCCCTTTC 1 41291 ( 112) CAGAAGTCTCCCTCACCTCAC 1 23726 ( 357) CTCCAAACCAGCCCCAGCCAA 1 37976 ( 331) AACTTCGCCGGCAACTCTCTC 1 3322 ( 215) AACACGCCTCCCAACATTCAA 1 11337 ( 214) TACCTCGAAAACTCCACCCTC 1 11737 ( 24) CTCAACCTCTCAACCCCATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 13920 bayes= 10.2527 E= 4.6e-012 -14 157 -1129 -170 98 -251 -1129 76 -1129 139 -31 -38 -40 149 -1129 -70 28 29 -263 47 -72 119 18 -270 -72 119 -104 -38 -272 194 -1129 -170 74 107 -1129 -170 45 29 -31 -70 -40 149 -63 -1129 -114 194 -1129 -1129 145 -19 -1129 -170 -72 188 -1129 -1129 8 157 -1129 -270 108 49 -1129 -111 -172 181 -263 -170 -40 29 -263 89 -1129 173 -1129 -11 86 -51 -163 11 8 166 -1129 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 25 E= 4.6e-012 0.240000 0.680000 0.000000 0.080000 0.520000 0.040000 0.000000 0.440000 0.000000 0.600000 0.200000 0.200000 0.200000 0.640000 0.000000 0.160000 0.320000 0.280000 0.040000 0.360000 0.160000 0.520000 0.280000 0.040000 0.160000 0.520000 0.120000 0.200000 0.040000 0.880000 0.000000 0.080000 0.440000 0.480000 0.000000 0.080000 0.360000 0.280000 0.200000 0.160000 0.200000 0.640000 0.160000 0.000000 0.120000 0.880000 0.000000 0.000000 0.720000 0.200000 0.000000 0.080000 0.160000 0.840000 0.000000 0.000000 0.280000 0.680000 0.000000 0.040000 0.560000 0.320000 0.000000 0.120000 0.080000 0.800000 0.040000 0.080000 0.200000 0.280000 0.040000 0.480000 0.000000 0.760000 0.000000 0.240000 0.480000 0.160000 0.080000 0.280000 0.280000 0.720000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CA][AT][CGT][CA][TAC][CG][CT]C[CA][ACG][CA]C[AC]C[CA][AC]C[TCA][CT][AT][CA] -------------------------------------------------------------------------------- Time 6.99 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 16 sites = 20 llr = 223 E-value = 3.3e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :1146:4266:8172: pos.-specific C 111321::2:1:11:: probability G :8911a283291938a matrix T 91132:4::2:2::11 bits 2.1 1.9 1.7 * * 1.5 * * * * Relative 1.3 * * * * * * Entropy 1.1 *** * * * * ** (16.1 bits) 0.9 *** * * ****** 0.6 *** * ********* 0.4 *** ************ 0.2 **************** 0.0 ---------------- Multilevel TGGAAGAGAAGAGAGG consensus T TAGG GA sequence C G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 8701 270 9.32e-09 TGAGATGTGT TGGAAGAGCAGAGAGG TTGAGTGTTG 29244 128 5.02e-08 CGGCGTTGCT TGGTAGAGAAGGGAGG AGAAGTGTGG 268773 328 2.65e-07 GTGTTGTCGT TGGGTGTGAAGAGAGG CGAGCACAGA 2577 193 3.67e-07 CAAGCTAACG TGGACGAGATGAGAAG CCCTGGTAGA 11093 34 9.54e-07 TTGTTACTCG TGGACGAGGAGAGCGG TATTCTTGGC 11734 191 1.05e-06 GAAGAGGTTG TGGTGGTGGTGAGGGG TAGGATGCCG 7906 384 2.04e-06 GCGGCCACGG TGGCAGGAAACAGGGG ACAACGAAGT 41548 265 2.45e-06 TCGGACGGAC TTGTCGTGAGGAGGGG AGTCGATTTC 269456 112 2.45e-06 AGGGGTTGAT TGCAAGTGAGGTGAGG AGCAAGACGG 37976 424 2.68e-06 GAGTGGCTGT TGTTAGAGCTGAGAGG GAATGTCGTC 3581 200 2.68e-06 GACGACATGC TGGCGGTGAAGAGGTG GTTGGCAGGG 39497 228 2.92e-06 TTGGTGCGGT TGGAAGGAGTGTGAGG ATGAGGAGGA 35409 205 2.92e-06 AAGTAAAGGC TCGTAGTGCAGAGAAG GCTCGTCAGA 7510 77 3.47e-06 AGTGGATGAA TGGTAGGGAACACAGG TGTTAATCGA 21327 168 5.28e-06 GTTGTTGAAA TAGCAGTGAGGGGAGG TCCTTCATGA 4002 318 6.71e-06 CGTATCGGTG CGGAAGTGGAGAAAAG AAAGAGACTA 25933 265 7.26e-06 GTTGCCGATT TGAAACAGAAGAGGGG GTACGAAACG 23726 75 8.49e-06 AGGAACGCAA CGGCTGAGAAGAGAGT TGCTGTAATG 7060 234 1.24e-05 TGTTGGGTGT TGGCAGGAGGGTGAAG GGTCGAGGCT 11337 122 2.18e-05 CACTGTTGTA TTGATGAAAAGAAGGG ACAAGATAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 8701 9.3e-09 269_[+2]_215 29244 5e-08 127_[+2]_357 268773 2.7e-07 327_[+2]_157 2577 3.7e-07 192_[+2]_292 11093 9.5e-07 33_[+2]_451 11734 1.1e-06 190_[+2]_294 7906 2e-06 383_[+2]_101 41548 2.4e-06 264_[+2]_220 269456 2.4e-06 111_[+2]_373 37976 2.7e-06 423_[+2]_61 3581 2.7e-06 199_[+2]_285 39497 2.9e-06 227_[+2]_257 35409 2.9e-06 204_[+2]_280 7510 3.5e-06 76_[+2]_408 21327 5.3e-06 167_[+2]_317 4002 6.7e-06 317_[+2]_167 25933 7.3e-06 264_[+2]_220 23726 8.5e-06 74_[+2]_410 7060 1.2e-05 233_[+2]_251 11337 2.2e-05 121_[+2]_363 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=16 seqs=20 8701 ( 270) TGGAAGAGCAGAGAGG 1 29244 ( 128) TGGTAGAGAAGGGAGG 1 268773 ( 328) TGGGTGTGAAGAGAGG 1 2577 ( 193) TGGACGAGATGAGAAG 1 11093 ( 34) TGGACGAGGAGAGCGG 1 11734 ( 191) TGGTGGTGGTGAGGGG 1 7906 ( 384) TGGCAGGAAACAGGGG 1 41548 ( 265) TTGTCGTGAGGAGGGG 1 269456 ( 112) TGCAAGTGAGGTGAGG 1 37976 ( 424) TGTTAGAGCTGAGAGG 1 3581 ( 200) TGGCGGTGAAGAGGTG 1 39497 ( 228) TGGAAGGAGTGTGAGG 1 35409 ( 205) TCGTAGTGCAGAGAAG 1 7510 ( 77) TGGTAGGGAACACAGG 1 21327 ( 168) TAGCAGTGAGGGGAGG 1 4002 ( 318) CGGAAGTGGAGAAAAG 1 25933 ( 265) TGAAACAGAAGAGGGG 1 23726 ( 75) CGGCTGAGAAGAGAGT 1 7060 ( 234) TGGCAGGAGGGTGAAG 1 11337 ( 122) TTGATGAAAAGAAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 14065 bayes= 9.70771 E= 3.3e-006 -1097 -119 -1097 179 -240 -219 169 -138 -240 -219 178 -237 60 13 -230 21 118 -61 -131 -79 -1097 -219 194 -1097 60 -1097 -31 62 -40 -1097 169 -1097 118 -61 1 -1097 118 -1097 -31 -38 -1097 -119 186 -1097 151 -1097 -131 -79 -140 -219 178 -1097 130 -219 28 -1097 -40 -1097 160 -237 -1097 -1097 194 -237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 20 E= 3.3e-006 0.000000 0.100000 0.000000 0.900000 0.050000 0.050000 0.800000 0.100000 0.050000 0.050000 0.850000 0.050000 0.400000 0.250000 0.050000 0.300000 0.600000 0.150000 0.100000 0.150000 0.000000 0.050000 0.950000 0.000000 0.400000 0.000000 0.200000 0.400000 0.200000 0.000000 0.800000 0.000000 0.600000 0.150000 0.250000 0.000000 0.600000 0.000000 0.200000 0.200000 0.000000 0.100000 0.900000 0.000000 0.750000 0.000000 0.100000 0.150000 0.100000 0.050000 0.850000 0.000000 0.650000 0.050000 0.300000 0.000000 0.200000 0.000000 0.750000 0.050000 0.000000 0.000000 0.950000 0.050000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- TGG[ATC]AG[ATG][GA][AG][AGT]GAG[AG][GA]G -------------------------------------------------------------------------------- Time 13.67 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 16 sites = 8 llr = 124 E-value = 8.6e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 95::::::a::::51: pos.-specific C :161a::::1::a314 probability G :31::::3::a1:3:6 matrix T 1139:aa8:9:9::8: bits 2.1 * * 1.9 *** * * * 1.7 *** * * * 1.5 **** ***** Relative 1.3 * **** ***** Entropy 1.1 * ********** * (22.4 bits) 0.9 * *********** ** 0.6 * *********** ** 0.4 * ************** 0.2 **************** 0.0 ---------------- Multilevel AACTCTTTATGTCATG consensus GT G C C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 25387 414 5.46e-10 TCTTGGGTCG AACTCTTTATGTCATC GCCGCTCCAC 11737 440 7.91e-10 CCTTTTGTAA AACTCTTTATGTCCTG CGCCTGCTCG 7510 416 1.75e-08 TAGAAGCATT AACTCTTTATGTCCAG AGTCCAGCAG 21327 442 4.65e-08 GACATAACAC TGCTCTTTATGTCGTG AACAAACGTA 7060 71 8.98e-08 GTAGGCGGTG AGTTCTTTACGTCATC TAATGTTTTC 39299 199 1.43e-07 AAACGCCAGA ACCCCTTGATGTCATC AAGAAATGAG 29244 287 1.51e-07 TTGTGATGAG AAGTCTTGATGGCATG ATAGTTGGGG 11733 346 1.74e-07 TTGCAGGAAG ATTTCTTTATGTCGCG GAGAGGGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 25387 5.5e-10 413_[+3]_71 11737 7.9e-10 439_[+3]_45 7510 1.8e-08 415_[+3]_69 21327 4.7e-08 441_[+3]_43 7060 9e-08 70_[+3]_414 39299 1.4e-07 198_[+3]_286 29244 1.5e-07 286_[+3]_198 11733 1.7e-07 345_[+3]_139 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=16 seqs=8 25387 ( 414) AACTCTTTATGTCATC 1 11737 ( 440) AACTCTTTATGTCCTG 1 7510 ( 416) AACTCTTTATGTCCAG 1 21327 ( 442) TGCTCTTTATGTCGTG 1 7060 ( 71) AGTTCTTTACGTCATC 1 39299 ( 199) ACCCCTTGATGTCATC 1 29244 ( 287) AAGTCTTGATGGCATG 1 11733 ( 346) ATTTCTTTATGTCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 14065 bayes= 11.5163 E= 8.6e-002 173 -965 -965 -105 92 -87 1 -105 -965 145 -98 -6 -965 -87 -965 175 -965 213 -965 -965 -965 -965 -965 194 -965 -965 -965 194 -965 -965 1 153 192 -965 -965 -965 -965 -87 -965 175 -965 -965 201 -965 -965 -965 -98 175 -965 213 -965 -965 92 13 1 -965 -108 -87 -965 153 -965 71 134 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 8 E= 8.6e-002 0.875000 0.000000 0.000000 0.125000 0.500000 0.125000 0.250000 0.125000 0.000000 0.625000 0.125000 0.250000 0.000000 0.125000 0.000000 0.875000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 1.000000 0.000000 0.000000 0.500000 0.250000 0.250000 0.000000 0.125000 0.125000 0.000000 0.750000 0.000000 0.375000 0.625000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- A[AG][CT]TCTT[TG]ATGTC[ACG]T[GC] -------------------------------------------------------------------------------- Time 19.96 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 11093 1.02e-08 33_[+2(9.54e-07)]_39_[+3(1.97e-05)]_\ 303_[+1(1.53e-08)]_72 11185 1.20e-03 314_[+1(5.60e-07)]_165 11337 5.87e-03 121_[+2(2.18e-05)]_76_\ [+1(3.24e-05)]_266 11733 7.16e-04 345_[+3(1.74e-07)]_139 11734 2.85e-07 190_[+2(1.05e-06)]_202_\ [+1(2.02e-08)]_71 11737 1.22e-06 23_[+1(3.46e-05)]_395_\ [+3(7.91e-10)]_45 21327 1.40e-09 167_[+2(5.28e-06)]_258_\ [+3(4.65e-08)]_15_[+1(1.36e-07)]_7 23726 1.05e-03 74_[+2(8.49e-06)]_266_\ [+1(9.31e-06)]_7_[+1(8.35e-05)]_95 25387 1.87e-09 413_[+3(5.46e-10)]_10_\ [+1(5.11e-08)]_40 2577 2.72e-05 192_[+2(3.67e-07)]_240_\ [+1(3.29e-06)]_31 25789 4.08e-02 204_[+1(6.33e-06)]_275 25933 5.82e-05 264_[+2(7.26e-06)]_196_\ [+1(2.98e-07)]_3 268773 5.31e-06 327_[+2(2.65e-07)]_126_\ [+1(7.57e-07)]_10 269456 1.03e-04 88_[+2(9.94e-05)]_7_[+2(2.45e-06)]_\ 226_[+1(2.54e-06)]_77_[+1(8.82e-05)]_28 29244 1.88e-10 127_[+2(5.02e-08)]_143_\ [+3(1.51e-07)]_157_[+1(5.05e-07)]_20 3322 1.32e-02 214_[+1(1.55e-05)]_265 35409 2.16e-06 204_[+2(2.92e-06)]_243_\ [+1(5.81e-08)]_16 3581 4.40e-03 199_[+2(2.68e-06)]_285 37976 3.37e-04 330_[+1(1.00e-05)]_72_\ [+2(2.68e-06)]_61 39299 1.99e-03 198_[+3(1.43e-07)]_286 39497 2.45e-06 227_[+2(2.92e-06)]_220_\ [+1(1.07e-07)]_16 4002 3.87e-04 317_[+2(6.71e-06)]_127_\ [+1(4.98e-06)]_19 41291 5.68e-02 111_[+1(9.31e-06)]_368 41548 4.54e-05 36_[+1(5.40e-06)]_207_\ [+2(2.45e-06)]_153_[+1(1.62e-06)]_12_[+1(6.68e-05)]_13 7060 1.44e-05 70_[+3(8.98e-08)]_147_\ [+2(1.24e-05)]_251 7510 6.50e-10 76_[+2(3.47e-06)]_323_\ [+3(1.75e-08)]_15_[+1(2.39e-07)]_33 7906 7.98e-08 38_[+1(7.02e-10)]_324_\ [+2(2.04e-06)]_101 8701 6.27e-07 96_[+2(9.41e-05)]_157_\ [+2(9.32e-09)]_124_[+1(4.23e-06)]_70 9795 4.11e-02 461_[+1(8.63e-06)]_18 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************