******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/221/221.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10853 1.0000 500 13224 1.0000 500 15688 1.0000 500 17110 1.0000 500 1835 1.0000 500 20629 1.0000 500 20788 1.0000 500 20814 1.0000 500 20879 1.0000 500 21050 1.0000 500 21397 1.0000 500 21682 1.0000 500 21933 1.0000 500 21966 1.0000 500 22139 1.0000 500 22200 1.0000 500 22599 1.0000 500 22861 1.0000 500 22985 1.0000 500 23106 1.0000 500 23354 1.0000 500 23718 1.0000 500 24038 1.0000 500 24123 1.0000 500 24358 1.0000 500 24632 1.0000 500 24867 1.0000 500 25277 1.0000 500 25412 1.0000 500 25799 1.0000 500 26071 1.0000 500 261109 1.0000 500 261462 1.0000 500 26678 1.0000 500 268048 1.0000 500 268629 1.0000 500 268678 1.0000 500 268688 1.0000 500 268745 1.0000 500 268807 1.0000 500 268970 1.0000 500 270145 1.0000 500 27873 1.0000 500 28189 1.0000 500 28441 1.0000 500 3018 1.0000 500 30454 1.0000 500 30691 1.0000 500 31047 1.0000 500 31415 1.0000 500 31938 1.0000 500 32066 1.0000 500 32788 1.0000 500 32790 1.0000 500 32816 1.0000 500 33589 1.0000 500 33718 1.0000 500 33871 1.0000 500 34348 1.0000 500 34413 1.0000 500 35207 1.0000 500 35911 1.0000 500 36053 1.0000 500 36186 1.0000 500 36345 1.0000 500 37071 1.0000 500 37327 1.0000 500 38776 1.0000 500 39022 1.0000 500 3944 1.0000 500 40044 1.0000 500 40223 1.0000 500 40341 1.0000 500 42515 1.0000 500 5294 1.0000 500 5532 1.0000 500 6250 1.0000 500 6803 1.0000 500 7151 1.0000 500 7742 1.0000 500 8259 1.0000 500 8997 1.0000 500 bd1709 1.0000 500 bd621 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/221/221.seqs.fa -oc motifs/221 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 84 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 42000 N= 84 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.260 C 0.242 G 0.242 T 0.256 Background letter frequencies (from dataset with add-one prior applied): A 0.260 C 0.242 G 0.242 T 0.256 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 76 llr = 744 E-value = 4.6e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 151642633832441732563 pos.-specific C 628247:55177349147536 probability G 2::::121::::2:::2:::: matrix T :3122:2221:112:211:11 bits 2.0 1.8 1.6 1.4 * Relative 1.2 * * Entropy 1.0 * * * * (14.1 bits) 0.8 * * * *** ** ** * 0.6 * * ** *** ** **** 0.4 ************ *** **** 0.2 ********************* 0.0 --------------------- Multilevel CACACCACCACCAACACCAAC consensus GT TA AA A CC TA CCA sequence C T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 42515 275 7.53e-10 CTTTCTCTCT CTCTCCACAACCACCACCAAC CACCCTTTCC 35207 4 1.18e-09 ACT GTCACCACCACCAACAACAAC AACGCTGGCA 21966 480 2.86e-09 CCGCCGCTAC AACACCACAACCAACACCACC 6250 127 2.01e-08 CAGGCAAACT CAAAACACCAACCCCAACCAC AGCCTTGACC 22599 473 2.41e-08 CTCGACCTTA CACAACAACACCGCAACCACC ACCGCAA 22985 292 4.79e-08 CAAGCAACCT CCCTCCATCAACACCACCACC ACTCTCTCTC 17110 451 4.79e-08 TGCAAACAGA CACACCTTCACCGCCACACAC TCGACCACAA 268048 436 9.21e-08 GAGCCACACA CACTACAAAACCAACAACCTC GGTGGATAGG 10853 187 9.21e-08 CTGAACACCG CTCTCCTCCACCAACTACCAC GGTTGGTTTG 270145 397 3.07e-07 CTGCAACTGC AACACCAACACCGCCTCCACA CTTTCACAGT 40223 440 4.08e-07 ATGATTAGTA CCAACCATCACCACCAGCCAA CCGCAAGATT 22139 457 5.38e-07 TACCACGAAA CAAAACACCACAACCACACAA CAGACCTCAC 268629 418 7.04e-07 ACACCTCTGC CTCCACACCACCCACACCTAC GGAGAGAGTT 24867 467 8.03e-07 CCTCACCTGA CACACCACCAATCCCAGCATC ATAATCATTA 20788 437 8.03e-07 CCGCTCATCA AACCAAACCAACAACACCCAA CACGTCGCCT 23106 330 9.16e-07 CAAACAGCTG CACATCGTAACCTCCACCACA AGAACAAATG 23354 375 1.04e-06 TGGTTAAAGA GCCATCACAAACAACACAAAA GGATAACTGC 5532 473 1.52e-06 TTCCTCCAAT CACAACACCAAGCACACCACT CGCTTCT 32788 282 1.52e-06 ACTGCACTCT CACAACGACAAACACAGACAC AGACGCAGGA 20879 401 1.95e-06 CATCAGACGG CTCTCCTTCACAACCACACAC CCTCGCCTTC 37071 7 2.20e-06 TCACAC CACCCATCAAACAACAGCACC ACACACGGTA 34348 474 2.20e-06 CACCTCCTTA ATCACCGCATCCAACATCCAC CGCAAA 25277 480 2.20e-06 GAAACGCCAA ACCCACACAACCGCCCACAAC 31047 38 2.78e-06 TTAGGGCTCA CTCACCACGAACCACTCAAAC TCTCTCTTAC 268678 349 3.51e-06 ATCCACCCCA CTCGCCACCTCCACCATCCAA TGCGCAGGAC 33589 478 4.40e-06 TCCCTGAACA CCTCACAACAACGACACCCAA AC 261109 281 5.50e-06 TTGGTAGTAC CTCTTCGCTACAACCATCCCC CAGTACGCGT 21933 480 5.50e-06 GACCAACGCT CCCACCTGCTCCCACATCAAC bd621 149 6.83e-06 TCTCCTCAAG CACAAGTGCAAAACCAACAAC CTCCGAGGAG 40341 332 6.83e-06 ACGCTGCATA CACTACAACAAATCCAAACAA TGGCACCACC 27873 77 6.83e-06 CTCTCTCGAC CACAAAACTTCCTTCAGCACC CTCGTTCACC 268688 441 6.83e-06 CTCTCTCGAC CACAAAACTTCCTTCAGCACC CTCGTTCACC 7151 152 7.60e-06 TTGTTTCTCT CCCAAAATCAACGACAGTACC GTCTGAGGCC 32790 10 7.60e-06 CCCCAACGC CTCATGAAGACCACCACCAAA ATCCGCGTGA 22200 436 7.60e-06 CACTCTTCCG CTCACCAGTCACAACCACAAC TCTCCCCAAA 21397 363 7.60e-06 CATTAAGATC CACCTCTTTACCAACACTCAA AGAAGCGTCA 35911 257 8.45e-06 CATCACATCA CCATCCTCAAACGCCATCAAC GACAAGGTAT 15688 469 8.45e-06 CAACCGTCAC CACTACAGCACCATCTCACTC TTCCAGCCAC 261462 472 9.38e-06 CAAAAAACCA CTCTTCACTACTACCCACCAC CCGCCACG 25799 477 9.38e-06 ACTTAGTGTA CCATCCGCAAACGACTACAAC AAC 21682 465 9.38e-06 CTGGCTACCA CCAACCATTACCGCCCACACC GCTCCCTTGC 36345 149 1.04e-05 CTCTCACAAC GACTCCAATCCCTCCTCCAAA ACGACGAAGG 39022 300 1.15e-05 CCGACAACAA CGCAACACAACACAAACAAAC GATGGGGAAG 268807 129 1.15e-05 CAAGATAGAA CACAACACACCCCACCGTACA AAAACAGCCC 25412 205 1.27e-05 TCAGGACGCC CTCCACAACACCTCCTCTCTC GGTTCACGTT 13224 471 1.27e-05 CCCTACCCTC CTCTTCACAACCTCCACTACT ACCACTACC 21050 453 1.71e-05 CAGCCAAGTC GCCATCACCTCCATCACACAT CCATCACGTA 20629 420 1.71e-05 ACCCCAGCAA CCCAAGACAACCCAATACACA CCATGCAGGC 31415 476 2.08e-05 CTCTCCCCTC CACACAAAAACAGTCACTCTC ACTC 32066 272 2.28e-05 TTAGCACCGC GACACATCCACCGAATCTCAC TGCTCACTTT 23718 479 2.28e-05 TTCGGCAAGC GACAACTCATAGACCAGCCAC C 28189 427 2.51e-05 CCCTCGGCGA ATCACAGCCACCCAAATCCAA AAATGACACG 268745 302 2.51e-05 TGTTCAAGAG ATCCACAATACCGACTCTCCC GAGGTGGCAA 268970 107 2.75e-05 GGATTGACTT CTCAAGGCACCCATCAGCAAT ACACAAGCAT 31938 235 3.02e-05 GCTACATTCA AACATGAACAACGCAATCAAC AATCGACAAA 30691 84 3.02e-05 CACATCACTG CACCAACACACCAACAAAAAC ACGTGCACAC 30454 454 3.02e-05 CCTCGATCGA GACATCAATCACAACACCCTT TCACTCATCG 36053 3 3.95e-05 GT GCCATCGGCAACCTCTCCAAA GTACAATCTT 1835 396 3.95e-05 TCCATCCATC CATCCGACCACCGACCGCCAA CAAAGAACGG 8259 160 4.70e-05 TCTCAACAGT GACTCCAAAAACCTCTCCGAC CATTTCCCGC 38776 456 5.12e-05 CCACAGGTGA ACCATCAACCACATAAACACC AAAGCAATCA 7742 477 6.07e-05 CCACTGCAGC CACCACGCTACACACCCTCTC ACG 24632 317 6.07e-05 ACGTGACACT GACACAACAACCACAATAATA GAAGCATGAG 24038 110 6.07e-05 TTGCATCACA CACTAGTAAACACTCTGCCAC TTTAATTCCA bd1709 441 6.60e-05 CCACAAAGAA GACGACGATACCGCCCCTAAC GGCGACCAAC 28441 34 7.77e-05 GCTAAAGCTC GACACCACTCCTTCATACCAC CGTTCAAACG 22861 330 7.77e-05 CACCCTCTTC CGTACCGTCACCGTCACCCAT CACAATGGCA 24123 40 9.12e-05 CATCACCCTT ACTACCGTCCCCCACATCACC ACCATTCGCC 34413 453 1.07e-04 TTCTTGTCAC ATTCACACAACACAAAGCCAC CTTGTTGGCC 26678 479 1.07e-04 AATCTCGTCT GCCAACGCAACTGTCTACAAT C 36186 480 1.24e-04 GGTCGCATCC GACACAATAACACAATACACA 3018 345 1.34e-04 TCCTAAGTTA CTTACCGCTCACTTCAACACA ACTTTTCGAC 3944 399 1.80e-04 TGTACAGTAG CAAACCTCTTTAGCCAACCAC ACGTCTCACG 33718 458 1.80e-04 CTGGTCACAA CACAAAATTATGCTCAGCCAC TCAATGCCAC 37327 204 2.73e-04 CTATCATAAC GACTTGATCCAAACCAAACCC ACCTTGTTTC 33871 40 2.73e-04 CCGCGCCGTG GAAGTCGACCCCACCTACCCC AAGGGCTACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 42515 7.5e-10 274_[+1]_205 35207 1.2e-09 3_[+1]_476 21966 2.9e-09 479_[+1] 6250 2e-08 126_[+1]_353 22599 2.4e-08 472_[+1]_7 22985 4.8e-08 291_[+1]_188 17110 4.8e-08 450_[+1]_29 268048 9.2e-08 435_[+1]_44 10853 9.2e-08 186_[+1]_293 270145 3.1e-07 396_[+1]_83 40223 4.1e-07 439_[+1]_40 22139 5.4e-07 456_[+1]_23 268629 7e-07 417_[+1]_62 24867 8e-07 466_[+1]_13 20788 8e-07 436_[+1]_43 23106 9.2e-07 329_[+1]_150 23354 1e-06 374_[+1]_105 5532 1.5e-06 472_[+1]_7 32788 1.5e-06 281_[+1]_198 20879 1.9e-06 400_[+1]_79 37071 2.2e-06 6_[+1]_473 34348 2.2e-06 473_[+1]_6 25277 2.2e-06 479_[+1] 31047 2.8e-06 37_[+1]_442 268678 3.5e-06 348_[+1]_131 33589 4.4e-06 477_[+1]_2 261109 5.5e-06 280_[+1]_199 21933 5.5e-06 479_[+1] bd621 6.8e-06 148_[+1]_331 40341 6.8e-06 331_[+1]_148 27873 6.8e-06 76_[+1]_403 268688 6.8e-06 440_[+1]_39 7151 7.6e-06 151_[+1]_328 32790 7.6e-06 9_[+1]_470 22200 7.6e-06 435_[+1]_44 21397 7.6e-06 362_[+1]_117 35911 8.4e-06 256_[+1]_223 15688 8.4e-06 468_[+1]_11 261462 9.4e-06 471_[+1]_8 25799 9.4e-06 476_[+1]_3 21682 9.4e-06 464_[+1]_15 36345 1e-05 148_[+1]_331 39022 1.2e-05 299_[+1]_180 268807 1.2e-05 128_[+1]_351 25412 1.3e-05 204_[+1]_275 13224 1.3e-05 470_[+1]_9 21050 1.7e-05 452_[+1]_27 20629 1.7e-05 419_[+1]_60 31415 2.1e-05 475_[+1]_4 32066 2.3e-05 271_[+1]_208 23718 2.3e-05 478_[+1]_1 28189 2.5e-05 426_[+1]_53 268745 2.5e-05 301_[+1]_178 268970 2.8e-05 106_[+1]_373 31938 3e-05 234_[+1]_245 30691 3e-05 83_[+1]_396 30454 3e-05 453_[+1]_26 36053 3.9e-05 2_[+1]_477 1835 3.9e-05 395_[+1]_84 8259 4.7e-05 159_[+1]_320 38776 5.1e-05 455_[+1]_24 7742 6.1e-05 476_[+1]_3 24632 6.1e-05 316_[+1]_163 24038 6.1e-05 109_[+1]_370 bd1709 6.6e-05 440_[+1]_39 28441 7.8e-05 33_[+1]_446 22861 7.8e-05 329_[+1]_150 24123 9.1e-05 39_[+1]_440 34413 0.00011 452_[+1]_27 26678 0.00011 478_[+1]_1 36186 0.00012 479_[+1] 3018 0.00013 344_[+1]_135 3944 0.00018 398_[+1]_81 33718 0.00018 457_[+1]_22 37327 0.00027 203_[+1]_276 33871 0.00027 39_[+1]_440 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=76 42515 ( 275) CTCTCCACAACCACCACCAAC 1 35207 ( 4) GTCACCACCACCAACAACAAC 1 21966 ( 480) AACACCACAACCAACACCACC 1 6250 ( 127) CAAAACACCAACCCCAACCAC 1 22599 ( 473) CACAACAACACCGCAACCACC 1 22985 ( 292) CCCTCCATCAACACCACCACC 1 17110 ( 451) CACACCTTCACCGCCACACAC 1 268048 ( 436) CACTACAAAACCAACAACCTC 1 10853 ( 187) CTCTCCTCCACCAACTACCAC 1 270145 ( 397) AACACCAACACCGCCTCCACA 1 40223 ( 440) CCAACCATCACCACCAGCCAA 1 22139 ( 457) CAAAACACCACAACCACACAA 1 268629 ( 418) CTCCACACCACCCACACCTAC 1 24867 ( 467) CACACCACCAATCCCAGCATC 1 20788 ( 437) AACCAAACCAACAACACCCAA 1 23106 ( 330) CACATCGTAACCTCCACCACA 1 23354 ( 375) GCCATCACAAACAACACAAAA 1 5532 ( 473) CACAACACCAAGCACACCACT 1 32788 ( 282) CACAACGACAAACACAGACAC 1 20879 ( 401) CTCTCCTTCACAACCACACAC 1 37071 ( 7) CACCCATCAAACAACAGCACC 1 34348 ( 474) ATCACCGCATCCAACATCCAC 1 25277 ( 480) ACCCACACAACCGCCCACAAC 1 31047 ( 38) CTCACCACGAACCACTCAAAC 1 268678 ( 349) CTCGCCACCTCCACCATCCAA 1 33589 ( 478) CCTCACAACAACGACACCCAA 1 261109 ( 281) CTCTTCGCTACAACCATCCCC 1 21933 ( 480) CCCACCTGCTCCCACATCAAC 1 bd621 ( 149) CACAAGTGCAAAACCAACAAC 1 40341 ( 332) CACTACAACAAATCCAAACAA 1 27873 ( 77) CACAAAACTTCCTTCAGCACC 1 268688 ( 441) CACAAAACTTCCTTCAGCACC 1 7151 ( 152) CCCAAAATCAACGACAGTACC 1 32790 ( 10) CTCATGAAGACCACCACCAAA 1 22200 ( 436) CTCACCAGTCACAACCACAAC 1 21397 ( 363) CACCTCTTTACCAACACTCAA 1 35911 ( 257) CCATCCTCAAACGCCATCAAC 1 15688 ( 469) CACTACAGCACCATCTCACTC 1 261462 ( 472) CTCTTCACTACTACCCACCAC 1 25799 ( 477) CCATCCGCAAACGACTACAAC 1 21682 ( 465) CCAACCATTACCGCCCACACC 1 36345 ( 149) GACTCCAATCCCTCCTCCAAA 1 39022 ( 300) CGCAACACAACACAAACAAAC 1 268807 ( 129) CACAACACACCCCACCGTACA 1 25412 ( 205) CTCCACAACACCTCCTCTCTC 1 13224 ( 471) CTCTTCACAACCTCCACTACT 1 21050 ( 453) GCCATCACCTCCATCACACAT 1 20629 ( 420) CCCAAGACAACCCAATACACA 1 31415 ( 476) CACACAAAAACAGTCACTCTC 1 32066 ( 272) GACACATCCACCGAATCTCAC 1 23718 ( 479) GACAACTCATAGACCAGCCAC 1 28189 ( 427) ATCACAGCCACCCAAATCCAA 1 268745 ( 302) ATCCACAATACCGACTCTCCC 1 268970 ( 107) CTCAAGGCACCCATCAGCAAT 1 31938 ( 235) AACATGAACAACGCAATCAAC 1 30691 ( 84) CACCAACACACCAACAAAAAC 1 30454 ( 454) GACATCAATCACAACACCCTT 1 36053 ( 3) GCCATCGGCAACCTCTCCAAA 1 1835 ( 396) CATCCGACCACCGACCGCCAA 1 8259 ( 160) GACTCCAAAAACCTCTCCGAC 1 38776 ( 456) ACCATCAACCACATAAACACC 1 7742 ( 477) CACCACGCTACACACCCTCTC 1 24632 ( 317) GACACAACAACCACAATAATA 1 24038 ( 110) CACTAGTAAACACTCTGCCAC 1 bd1709 ( 441) GACGACGATACCGCCCCTAAC 1 28441 ( 34) GACACCACTCCTTCATACCAC 1 22861 ( 330) CGTACCGTCACCGTCACCCAT 1 24123 ( 40) ACTACCGTCCCCCACATCACC 1 34413 ( 453) ATTCACACAACACAAAGCCAC 1 26678 ( 479) GCCAACGCAACTGTCTACAAT 1 36186 ( 480) GACACAATAACACAATACACA 1 3018 ( 345) CTTACCGCTCACTTCAACACA 1 3944 ( 399) CAAACCTCTTTAGCCAACCAC 1 33718 ( 458) CACAAAATTATGCTCAGCCAC 1 37327 ( 204) GACTTGATCCAAACCAAACCC 1 33871 ( 40) GAAGTCGACCCCACCTACCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 40320 bayes= 9.24372 E= 4.6e-050 -84 141 -20 -1289 98 -20 -320 -3 -130 175 -1289 -170 119 -62 -262 -28 60 80 -1289 -47 -72 161 -120 -1289 128 -420 -30 -70 -6 108 -188 -58 22 93 -320 -28 153 -74 -1289 -128 28 144 -1289 -328 -50 158 -262 -228 60 5 -3 -111 65 75 -1289 -47 -84 182 -1289 -1289 137 -120 -1289 -19 9 80 -39 -111 -60 153 -1289 -96 98 93 -420 -428 122 26 -1289 -128 2 141 -1289 -147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 76 E= 4.6e-050 0.144737 0.644737 0.210526 0.000000 0.513158 0.210526 0.026316 0.250000 0.105263 0.815789 0.000000 0.078947 0.592105 0.157895 0.039474 0.210526 0.394737 0.421053 0.000000 0.184211 0.157895 0.736842 0.105263 0.000000 0.631579 0.013158 0.197368 0.157895 0.250000 0.513158 0.065789 0.171053 0.302632 0.460526 0.026316 0.210526 0.750000 0.144737 0.000000 0.105263 0.315789 0.657895 0.000000 0.026316 0.184211 0.723684 0.039474 0.052632 0.394737 0.250000 0.236842 0.118421 0.407895 0.407895 0.000000 0.184211 0.144737 0.855263 0.000000 0.000000 0.671053 0.105263 0.000000 0.223684 0.276316 0.421053 0.184211 0.118421 0.171053 0.697368 0.000000 0.131579 0.513158 0.460526 0.013158 0.013158 0.605263 0.289474 0.000000 0.105263 0.263158 0.644737 0.000000 0.092105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CG][ATC]C[AT][CA]CA[CA][CAT]A[CA]C[ACG][AC]C[AT][CA]C[AC][AC][CA] -------------------------------------------------------------------------------- Time 52.82 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 84 llr = 738 E-value = 1.0e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 1:62:7:442242232:3222 pos.-specific C 2::::21:1:::::::221:: probability G 3a:4a:652662655683455 matrix T 5:44:1213334123313323 bits 2.0 * 1.8 * * 1.6 * * 1.4 * * Relative 1.2 * * Entropy 1.0 * * * (12.7 bits) 0.8 ** ** * 0.6 ** **** ** * ** 0.4 ** **** ** ***** ** 0.2 ***************** *** 0.0 --------------------- Multilevel TGATGAGGAGGAGGGGGTGGG consensus G TG TATTTTAAAT ATAT sequence A G G TT GAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 33871 324 3.20e-09 CGGGGTACTT GGAGGAGGGGGAGGGGGAGAG GGGGCTGTTT 32790 355 5.51e-09 TTCGGGCGGT GGTGGAGGAGGTGGGGGTGGA AAGTACGTCC 7742 282 1.08e-07 AAGAGTGTTG TGAGGAGGAAGAGGAAGGAGG AACGAGGAAG 5294 283 1.61e-07 GTGTAGGTAG TGAGGATAGGTTGGGGGGTTG AGTGGTTCGG 37071 229 1.61e-07 ATGCTTGTTA TGAGGAGAGTGAGGGGTTGGG TGTGGAGGGT 39022 180 3.38e-07 GGGGAGGGAG GGAGGAGGGAGTGGGAGGAGG AGTGAGGGCT 22861 36 4.03e-07 ACGCCAATGG CGAGGAGGGAGAGGAGGGTAG TGCGGTACAG 22985 1 4.80e-07 . TGTTGATGTGTTGGTGGTGAG GAGGCGGGGA 28189 152 5.70e-07 GAGGTGGTGG CGATGAGAGAGAGGAGGGTTG TTGTGAAGAG 25799 232 5.70e-07 CGGTGGACGA AGAGGAGACGGGGGGGGCAGG AAACTTTAAA 35207 123 6.75e-07 AGACATCTGC TGAGGATGTGGTGAGGGCGAT TAAACGAGCA 30454 189 9.38e-07 TCATGACGAT GGATGTTATGGAGAGGGGTGG TGCAGCTTTC 20814 250 9.38e-07 GAGCAACAGC AGAAGAGAAGGGAGGAGGGGG GTTGTAAGTT 6250 298 2.04e-06 GTCGTGGAAC GGAGGTGAGTGAGGAGGTTGA TGGATTGGTA 31415 237 2.36e-06 ATGGTTTTGA TGTTGAGATTGAGGATGGAAT GGAATGAATC 36345 321 2.73e-06 GGAGTGGCGG TGTAGATAAGGAAGGAGGTGT GGTGAATGGG 32816 97 2.73e-06 ACTTTCGTGG GGAGGAGGCGGAGAAGCAGGT ATGTGAATGT 27873 18 2.73e-06 GTTTTGCCTG TGTTGTGAGAGAGAGGGGAGG AGACTCGACG 268688 382 2.73e-06 GTTTTGCCTG TGTTGTGAGAGAGAGGGGAGG AGACTCGACG 25277 67 2.73e-06 GTGCAGTAGG GGTTGTGAGGGAGGATGAGTG ACTAACGAAA 20629 56 2.73e-06 CCTAGACATG TGAGGTAGAGTTGGGGGAGGG ATGGACGTTT 22139 149 3.15e-06 TATTGACAGC GGAGGCGGTGTTGATGGAGAG TGACATGTTG 40223 187 3.63e-06 TATCACTGAT GGATGACGGGTGGTTGGTGGG TGTTCAGCAT 8259 77 4.16e-06 TATGATGTGG TGACGAGAGGGTGGGGCGGTT GTTGTTTTGT 32788 115 4.16e-06 AATCAGACAT GGTGGATGAGTAGTTGGATTG GATTGGTGAA 24867 72 4.77e-06 CGGACGTTGA TGATGATGATGTCGAGGAGAG TATTCTTCTG 42515 345 5.46e-06 AGGAGACTCA CGAGGCGGCGGAGGAGGAAGA AGCTACGGAG 261462 19 5.46e-06 GAAGAAGGAG AGTAGAGGAGGAAAAGGGGGA ACGAGTTGCT 24123 385 5.46e-06 CGATGGCTGT TGAGGACGAGAAATGGGTGGT GCGTGATATT 3944 110 7.09e-06 GTCCGGCGTG TGATGAGTAGACGTGGGGTGG GTGTTGAAAG bd621 211 8.06e-06 AGATAATGGA TGATGCGGGGATGAGTGTTGA TTGCTACTCT 33589 292 8.06e-06 ATTGCTGCTG CGTGGTGATGGAGTGTGTGTG TCTTGTATGT 23354 64 8.06e-06 TCGTCAATGG AGTAGAGGAGATAGAGGGGAG AGACTGTACT 22200 43 8.06e-06 CATTTGTTGT TGATGATATTGTGGTGCTGTT GCGAATGTTG 20879 155 9.14e-06 ACAGGGATCG TGATGATGATGAGCGTGTGAG AGAGAAGGAG 268678 1 1.32e-05 . GGAGGACGAGAGGGAGGACGT GTCGGCTGTC 21050 105 1.32e-05 CTATTCTAGA GGAAGAGACTGAGGGGGCTGC TGCGCGGCGA 21933 7 1.49e-05 AATGGT AGTGGAGGAGTTATTGGGAAG AGACCGAGCG 22599 129 1.87e-05 CATTCAAAAT TGTAGCCAAGATGGAGGCTGG GGGTCTGAAA 34413 182 2.10e-05 TACTCGCTCT TGTGGAGATGATGTGTCAAGT TACTGACATG 33718 152 2.34e-05 CGTTTGGCAG TGATGACATTTGAAGGGATGT CTGGATATTT 35911 382 2.62e-05 CAACGTATAC GGAGGTGTGTGGGGGTGATGA TGTGTCGCGT 270145 6 2.62e-05 ACGAA TGTGGACAAGTAGTGTTTTGG TGTCATAGTC 268629 141 2.62e-05 ACTCCCTCAC GGAAGAGGTAGGAGAAGACGG CGATGCGGTT 261109 28 3.24e-05 TGGCAGGGTA TGATAATAAGTTGAGAGTTGG AGCTAGCATT 17110 382 3.24e-05 TTGTGAGAGG GGAAGAGGAGAGAGGGCTCGT CGTTGGTGTA 20788 271 3.60e-05 GATCAACGCA CGATGACGGAGAATGGGGTAG ATAGTGCTCA 40341 480 4.00e-05 CTGCTCTCAA CGATGAGGATGTAGAGTCAGA 21397 293 4.00e-05 GTCGTCGTGT GGTTGAGTTGTGATATGTAGG CCTGACCAAT 15688 366 4.42e-05 GAGCTCGCGC TGAGGCGAATGAGAGGCCAAA GTGTTATTTA 268048 105 5.40e-05 TCTTCTTCTT GGTAGAGGTGGTGGTGCCGTC GGCGTTGGGG 24038 151 5.40e-05 CTAGGAATAG TGAGGAGGAGGCAGGGGACTC ACACTAGAAG bd1709 2 6.55e-05 T GGTGGATGGTTTGTTAGTTTG TTACTTACTT 38776 61 6.55e-05 TTGTTGTAGT TGTTGCTGATGGCGATGTTGG AGCTGAAGTA 36053 122 6.55e-05 GACGGTTGGA TGTGGTGAAGTATTTAGTGAG TAAGGGGGCC 31938 23 6.55e-05 AAGAGTGAAC TGAAGAGACTGGTGGTGCAGA AGAAGGCGAC 24632 414 6.55e-05 AGGAAGCAAA AGTTGCGGTTGCGGAGGATGT TAGATTCTCA 5532 45 7.20e-05 TGAAGCCCAA GGATGCTAAGGAGTTTGCTAA CATGCAGTCG 36186 157 7.20e-05 ATTTGAACAT GGTGGAGGTGTTTGTGCTGGC TGCGGTGATG 32066 116 7.20e-05 GGTTAAACGA TGATGCGACGGTGGAATTGTT TTGTATTGAA 23106 385 7.20e-05 GCCAAAAGGA GGAAGCGAAAGTGATGCAAAG AAACACGTGC 31047 313 7.90e-05 TTATTAGATG TGATGATATGTTTCGTGTTGT TGGGCTTGTG 268807 55 8.66e-05 TCGAGCAAAG AGAAGAGGAGAGAAATGGGAT TTGATCTAAC 7151 441 1.04e-04 ATTCGTGTAG TGTGGAGTGAAGTGTGGAGTG CTGGTTTGTG 26071 280 1.13e-04 ACTCCAAGTT TGAGGTTGAAGTAAGTGTCAG ATATTAGTTG 37327 387 1.34e-04 AAGCGACTGG AGAAGAGAGAGGGCGAGAGAG GCGCTGGTGG 268970 293 1.34e-04 TTGGTTTCGT TGATGCATTGGGCGGGGGGGG GCGAAGCAGA 21682 152 1.34e-04 TTCGCCAATA TGTTGAGTTGAGTTGAGTTGA TAAATGTACT 10853 383 1.46e-04 AAACATACCT CGTTGATTTGTTGGTGCTCGT ATTCACTGCA 6803 249 1.58e-04 CCTTTGGAGA TGACGAGAAGTATTGAGACGA GCAATATCAA 25412 4 2.54e-04 GTT AGAAGAGATGTTAATTCATTT AGAATTAATG 30691 10 2.73e-04 AGTTGCAAG CGAGAAGAATTTGAATGAGTT GACAGAACAA 3018 8 2.73e-04 AAAATAC CGTTGAAGATGATGTTCTTGG TAACGTGAAA 21966 226 2.94e-04 GGTTAGCGTT TGGAGATTGGTAGTTGGTTAG GGGTCCGTTA 1835 177 2.94e-04 GAAGCGCGGG TGTCGAGGGAGTGATGTACGT GTTCTCTGTC 34348 284 3.64e-04 AGAAGACTCT CGGTGAGTATGATGTTGTTTG GTCGGCTGTG 13224 18 3.89e-04 AGCTCGCTCT TGTGGTCATTGGAGAGCCAAG TGAAAATAGC 24358 32 4.17e-04 GCAATTGTTG TGTTGCTGAGATGAATGATCT CTTCCAAGTC 8997 42 4.76e-04 GGCGTAGAAC CGATAAGTCGGAGGAAGCAGA GTGAGTTCCC 26678 154 4.76e-04 CATCTAAAAT CGATGTGAAGGGAAAATGTTA AAGAAAAATT 23718 17 4.76e-04 AGAATTTCTG TGTTGCCGCTTTGTTGCGGGT GATAAAATAC 268745 136 7.78e-04 GCGATTGTGA CGAAGAGAAAAATGGATCGTT TGCTTTCATG 40044 4 9.21e-04 AGA AGAAGATGTTGGCAGAGGATA GACCGTTCCT 28441 161 1.20e-03 CTCACCAACA CGACGAGTTGTGAGTTGCACG GGGTTCTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 33871 3.2e-09 323_[+2]_156 32790 5.5e-09 354_[+2]_125 7742 1.1e-07 281_[+2]_198 5294 1.6e-07 282_[+2]_197 37071 1.6e-07 228_[+2]_251 39022 3.4e-07 179_[+2]_300 22861 4e-07 35_[+2]_444 22985 4.8e-07 [+2]_479 28189 5.7e-07 151_[+2]_328 25799 5.7e-07 231_[+2]_248 35207 6.7e-07 122_[+2]_357 30454 9.4e-07 188_[+2]_291 20814 9.4e-07 249_[+2]_230 6250 2e-06 297_[+2]_182 31415 2.4e-06 236_[+2]_243 36345 2.7e-06 320_[+2]_159 32816 2.7e-06 96_[+2]_383 27873 2.7e-06 17_[+2]_462 268688 2.7e-06 381_[+2]_98 25277 2.7e-06 66_[+2]_413 20629 2.7e-06 55_[+2]_424 22139 3.1e-06 148_[+2]_331 40223 3.6e-06 186_[+2]_293 8259 4.2e-06 76_[+2]_403 32788 4.2e-06 114_[+2]_365 24867 4.8e-06 71_[+2]_408 42515 5.5e-06 344_[+2]_135 261462 5.5e-06 18_[+2]_461 24123 5.5e-06 384_[+2]_95 3944 7.1e-06 109_[+2]_370 bd621 8.1e-06 210_[+2]_269 33589 8.1e-06 291_[+2]_188 23354 8.1e-06 63_[+2]_416 22200 8.1e-06 42_[+2]_437 20879 9.1e-06 154_[+2]_325 268678 1.3e-05 [+2]_479 21050 1.3e-05 104_[+2]_375 21933 1.5e-05 6_[+2]_473 22599 1.9e-05 128_[+2]_351 34413 2.1e-05 181_[+2]_298 33718 2.3e-05 151_[+2]_328 35911 2.6e-05 381_[+2]_98 270145 2.6e-05 5_[+2]_474 268629 2.6e-05 140_[+2]_339 261109 3.2e-05 27_[+2]_452 17110 3.2e-05 381_[+2]_98 20788 3.6e-05 270_[+2]_209 40341 4e-05 479_[+2] 21397 4e-05 292_[+2]_187 15688 4.4e-05 365_[+2]_114 268048 5.4e-05 104_[+2]_375 24038 5.4e-05 150_[+2]_329 bd1709 6.5e-05 1_[+2]_478 38776 6.5e-05 60_[+2]_419 36053 6.5e-05 121_[+2]_358 31938 6.5e-05 22_[+2]_457 24632 6.5e-05 413_[+2]_66 5532 7.2e-05 44_[+2]_435 36186 7.2e-05 156_[+2]_323 32066 7.2e-05 115_[+2]_364 23106 7.2e-05 384_[+2]_95 31047 7.9e-05 312_[+2]_167 268807 8.7e-05 54_[+2]_425 7151 0.0001 440_[+2]_39 26071 0.00011 279_[+2]_200 37327 0.00013 386_[+2]_93 268970 0.00013 292_[+2]_187 21682 0.00013 151_[+2]_328 10853 0.00015 382_[+2]_97 6803 0.00016 248_[+2]_231 25412 0.00025 3_[+2]_476 30691 0.00027 9_[+2]_470 3018 0.00027 7_[+2]_472 21966 0.00029 225_[+2]_254 1835 0.00029 176_[+2]_303 34348 0.00036 283_[+2]_196 13224 0.00039 17_[+2]_462 24358 0.00042 31_[+2]_448 8997 0.00048 41_[+2]_438 26678 0.00048 153_[+2]_326 23718 0.00048 16_[+2]_463 268745 0.00078 135_[+2]_344 40044 0.00092 3_[+2]_476 28441 0.0012 160_[+2]_319 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=84 33871 ( 324) GGAGGAGGGGGAGGGGGAGAG 1 32790 ( 355) GGTGGAGGAGGTGGGGGTGGA 1 7742 ( 282) TGAGGAGGAAGAGGAAGGAGG 1 5294 ( 283) TGAGGATAGGTTGGGGGGTTG 1 37071 ( 229) TGAGGAGAGTGAGGGGTTGGG 1 39022 ( 180) GGAGGAGGGAGTGGGAGGAGG 1 22861 ( 36) CGAGGAGGGAGAGGAGGGTAG 1 22985 ( 1) TGTTGATGTGTTGGTGGTGAG 1 28189 ( 152) CGATGAGAGAGAGGAGGGTTG 1 25799 ( 232) AGAGGAGACGGGGGGGGCAGG 1 35207 ( 123) TGAGGATGTGGTGAGGGCGAT 1 30454 ( 189) GGATGTTATGGAGAGGGGTGG 1 20814 ( 250) AGAAGAGAAGGGAGGAGGGGG 1 6250 ( 298) GGAGGTGAGTGAGGAGGTTGA 1 31415 ( 237) TGTTGAGATTGAGGATGGAAT 1 36345 ( 321) TGTAGATAAGGAAGGAGGTGT 1 32816 ( 97) GGAGGAGGCGGAGAAGCAGGT 1 27873 ( 18) TGTTGTGAGAGAGAGGGGAGG 1 268688 ( 382) TGTTGTGAGAGAGAGGGGAGG 1 25277 ( 67) GGTTGTGAGGGAGGATGAGTG 1 20629 ( 56) TGAGGTAGAGTTGGGGGAGGG 1 22139 ( 149) GGAGGCGGTGTTGATGGAGAG 1 40223 ( 187) GGATGACGGGTGGTTGGTGGG 1 8259 ( 77) TGACGAGAGGGTGGGGCGGTT 1 32788 ( 115) GGTGGATGAGTAGTTGGATTG 1 24867 ( 72) TGATGATGATGTCGAGGAGAG 1 42515 ( 345) CGAGGCGGCGGAGGAGGAAGA 1 261462 ( 19) AGTAGAGGAGGAAAAGGGGGA 1 24123 ( 385) TGAGGACGAGAAATGGGTGGT 1 3944 ( 110) TGATGAGTAGACGTGGGGTGG 1 bd621 ( 211) TGATGCGGGGATGAGTGTTGA 1 33589 ( 292) CGTGGTGATGGAGTGTGTGTG 1 23354 ( 64) AGTAGAGGAGATAGAGGGGAG 1 22200 ( 43) TGATGATATTGTGGTGCTGTT 1 20879 ( 155) TGATGATGATGAGCGTGTGAG 1 268678 ( 1) GGAGGACGAGAGGGAGGACGT 1 21050 ( 105) GGAAGAGACTGAGGGGGCTGC 1 21933 ( 7) AGTGGAGGAGTTATTGGGAAG 1 22599 ( 129) TGTAGCCAAGATGGAGGCTGG 1 34413 ( 182) TGTGGAGATGATGTGTCAAGT 1 33718 ( 152) TGATGACATTTGAAGGGATGT 1 35911 ( 382) GGAGGTGTGTGGGGGTGATGA 1 270145 ( 6) TGTGGACAAGTAGTGTTTTGG 1 268629 ( 141) GGAAGAGGTAGGAGAAGACGG 1 261109 ( 28) TGATAATAAGTTGAGAGTTGG 1 17110 ( 382) GGAAGAGGAGAGAGGGCTCGT 1 20788 ( 271) CGATGACGGAGAATGGGGTAG 1 40341 ( 480) CGATGAGGATGTAGAGTCAGA 1 21397 ( 293) GGTTGAGTTGTGATATGTAGG 1 15688 ( 366) TGAGGCGAATGAGAGGCCAAA 1 268048 ( 105) GGTAGAGGTGGTGGTGCCGTC 1 24038 ( 151) TGAGGAGGAGGCAGGGGACTC 1 bd1709 ( 2) GGTGGATGGTTTGTTAGTTTG 1 38776 ( 61) TGTTGCTGATGGCGATGTTGG 1 36053 ( 122) TGTGGTGAAGTATTTAGTGAG 1 31938 ( 23) TGAAGAGACTGGTGGTGCAGA 1 24632 ( 414) AGTTGCGGTTGCGGAGGATGT 1 5532 ( 45) GGATGCTAAGGAGTTTGCTAA 1 36186 ( 157) GGTGGAGGTGTTTGTGCTGGC 1 32066 ( 116) TGATGCGACGGTGGAATTGTT 1 23106 ( 385) GGAAGCGAAAGTGATGCAAAG 1 31047 ( 313) TGATGATATGTTTCGTGTTGT 1 268807 ( 55) AGAAGAGGAGAGAAATGGGAT 1 7151 ( 441) TGTGGAGTGAAGTGTGGAGTG 1 26071 ( 280) TGAGGTTGAAGTAAGTGTCAG 1 37327 ( 387) AGAAGAGAGAGGGCGAGAGAG 1 268970 ( 293) TGATGCATTGGGCGGGGGGGG 1 21682 ( 152) TGTTGAGTTGAGTTGAGTTGA 1 10853 ( 383) CGTTGATTTGTTGGTGCTCGT 1 6803 ( 249) TGACGAGAAGTATTGAGACGA 1 25412 ( 4) AGAAGAGATGTTAATTCATTT 1 30691 ( 10) CGAGAAGAATTTGAATGAGTT 1 3018 ( 8) CGTTGAAGATGATGTTCTTGG 1 21966 ( 226) TGGAGATTGGTAGTTGGTTAG 1 1835 ( 177) TGTCGAGGGAGTGATGTACGT 1 34348 ( 284) CGGTGAGTATGATGTTGTTTG 1 13224 ( 18) TGTGGTCATTGGAGAGCCAAG 1 24358 ( 32) TGTTGCTGAGATGAATGATCT 1 8997 ( 42) CGATAAGTCGGAGGAAGCAGA 1 26678 ( 154) CGATGTGAAGGGAAAATGTTA 1 23718 ( 17) TGTTGCCGCTTTGTTGCGGGT 1 268745 ( 136) CGAAGAGAAAAATGGATCGTT 1 40044 ( 4) AGAAGATGTTGGCAGAGGATA 1 28441 ( 161) CGACGAGTTGTGAGTTGCACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 40320 bayes= 8.90388 E= 1.0e-037 -113 -54 5 86 -1304 -1304 205 -1304 125 -1304 -335 48 -36 -235 61 57 -286 -1304 199 -1304 143 -65 -1304 -84 -286 -118 138 -18 68 -1304 90 -97 64 -135 -2 3 -64 -1304 127 -3 -75 -1304 127 3 51 -276 -2 48 -20 -235 133 -110 -13 -276 111 -34 20 -1304 90 -3 -45 -1304 121 -3 -1304 -54 163 -162 8 -65 11 28 -28 -135 56 38 -13 -334 111 -26 -54 -235 108 3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 84 E= 1.0e-037 0.119048 0.166667 0.250000 0.464286 0.000000 0.000000 1.000000 0.000000 0.619048 0.000000 0.023810 0.357143 0.202381 0.047619 0.369048 0.380952 0.035714 0.000000 0.964286 0.000000 0.702381 0.154762 0.000000 0.142857 0.035714 0.107143 0.630952 0.226190 0.416667 0.000000 0.452381 0.130952 0.404762 0.095238 0.238095 0.261905 0.166667 0.000000 0.583333 0.250000 0.154762 0.000000 0.583333 0.261905 0.369048 0.035714 0.238095 0.357143 0.226190 0.047619 0.607143 0.119048 0.238095 0.035714 0.523810 0.202381 0.297619 0.000000 0.452381 0.250000 0.190476 0.000000 0.559524 0.250000 0.000000 0.166667 0.750000 0.083333 0.273810 0.154762 0.261905 0.309524 0.214286 0.095238 0.357143 0.333333 0.238095 0.023810 0.523810 0.214286 0.178571 0.047619 0.511905 0.261905 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [TG]G[AT][TGA]GA[GT][GA][ATG][GT][GT][ATG][GA][GAT][GAT][GT]G[TAG][GTA][GAT][GT] -------------------------------------------------------------------------------- Time 106.59 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 57 llr = 555 E-value = 1.2e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 2:121:2:11:::211::11: pos.-specific C ::22311221123:2:2::3: probability G 1452:92:64155242465:6 matrix T 66256:681583364644464 bits 2.0 1.8 1.6 1.4 * Relative 1.2 * Entropy 1.0 * * * * * (14.1 bits) 0.8 * * * * * ** 0.6 ** ** * ** ****** 0.4 ** ********** ****** 0.2 ********************* 0.0 --------------------- Multilevel TTGTTGTTGTTGGTTTTGGTG consensus AG GC G TCAG GTTCT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 24867 163 1.63e-09 GTTGTTGTTG TTGTCGTTGTTGTTGTGTTTG AGTGGATGGA 38776 205 3.50e-08 TGGGTTTGAC ATGTTGTTCGTGTTCTTGGTG TATGCTCACG 25277 21 3.50e-08 CGACGAGCTG TTGTTGTTGTTGTTGATGATG ATGTTCATGT 33871 403 1.36e-07 AGATTTGATG TGTTTGCTGTTGCTGTTGTTG TCGTCAACTT 21933 350 2.96e-07 CCATGGTGCC TGGTTGGTTGTTTTGTGGTTG GAGGCAGGGC 30691 384 3.97e-07 TTGGGGCATC TTGGTGTTGTGGCTTGTTGTT GGCTGGCTGC 6250 389 6.09e-07 TGTTATTGAC TTCATGTTGTTTGGTGTTGTG TGGTGTCAGA 261462 97 6.09e-07 GCAGTGAAGT GTGTTGTTGATCGTGTTGGCT ACTGTTTGTC 28441 199 6.99e-07 CGGTTTCAAC TTGTTCTCGTTTTTTTTTGTT CAAAAGCGGG 17110 126 8.02e-07 GAACATGGAT TGTTTGTTCTTGGGCTGTTTG CGTTCTTCGG 7151 403 9.17e-07 TTGGGCTGTA TTTGTGTTGGTGGTGGGGTAT TTGGGGCATT 28189 130 9.17e-07 GGGTTCGTCC TTGGCGGCGGTGGAGGTGGTG GCGATGAGAG 24123 297 9.17e-07 TTTGGGGCCC TTTTTCTTTTTGGATTTGTTG GATTTGGATG 268629 261 1.36e-06 ACGATTGTGT TTGGCGGTGGGTGGGTTGGTG GAGTACAAGA 3018 100 1.76e-06 GAGATCCGAG TTGACGTCGTTGTTCTCGGCT GAAGTTGCTG 20788 310 1.99e-06 CAGGCATTGG TTCCTGTTCATTGTTGGGGTG TTGTGAAGCA 31047 277 2.25e-06 TAAAATACCA AGATCGTTGGTGGTGAGTGTT GCTTCTTATT 22139 322 2.54e-06 GCTGCTCAAA TGCTTGCTTGTGCTGTTGGCG TCGGTAGGTG 40341 5 3.23e-06 GAAT TTCATGGCGATGGTGTGTGTG CAGTGTGTAT 32816 51 3.63e-06 ATGCCTGAAG TGTTTGTGTTTGGATTTGGTG CTGTTGTATT 25799 206 3.63e-06 AAACGGGTGG AGCATGGTGTTTGATTCGGTG GACGAAGAGG 35911 455 4.08e-06 GAGTCTTTGT TGGGTGATGTTGCGTCTGGTG CTGTATCGTC 37071 322 5.73e-06 GTACGTCTCC TTGATGTTCTTGTACTGTATT GAGTTGTTTA 36053 260 5.73e-06 CTAGGTATGT TTGTTCGTGTTGCTTATGATT TGCATTATAC 21050 52 6.39e-06 AGCGTTGATT AGGTTGTTGGTTCGTCGGGCG GCACGACGAT 33718 38 7.13e-06 CTGTTTTGGT ATACTGTTGCTTCTGTTTGTT GCTCGTAGTT 27873 223 7.13e-06 ATGAATTCCG GTGCTGTTGGGTGAGTGGTCT GAGCACGAGT bd621 272 7.94e-06 GTACAAAAGG TTAACGTTGTGCGTTAGGGTG CGTTATGTGA 5532 107 1.09e-05 CTCGCCATGC TTGCCGCTGCTGGTATGTGTG TTCAGGAGCA 39022 15 1.09e-05 TCCTGCACCG TTGGTGGCTGCTGTGTTGTTG ATTCTGGATG 36345 230 1.33e-05 GCTTGTCAAC TTGCCGATATTGGTGTTTACG GAAAGTTGAG 268688 351 1.33e-05 CTGTCGCGCA TGGTCGTTGAGGCAGGGTTTG GTTTTGCCTG 23718 290 1.33e-05 CCACTCATAG ATGATGACGTTGTTCTCTGTT CTCGTTTCTC 30454 217 1.62e-05 TGGTGCAGCT TTCATGTTGGTGGTTGCTGCA AGGGTCCGAG 26678 302 1.79e-05 TCCTCTCCAG AGTTTGTCCTTCGTTTCGTCT GTCCCTCGCC 40044 324 1.97e-05 ACCAACATAA ATATTGTTAGTGTATGGGTTT TCATATTGTG 32066 203 1.97e-05 CGAGCGCTCT GTGCTCTTGTCGCATTGGGTT ATGAGCTGAA 42515 415 2.16e-05 TAAGCAGCCC TGTTTGGCGGCCGGGTGGGTG GGTGCTGGTT 20879 303 2.16e-05 TCAACTTTGT TTGCAGCTCTTTGTGAGGGTT GATGCGCGGA 268745 219 2.38e-05 TCGTTGCCTA TGCTAGTTGGTGGCGTGGATG AGAACTACAA 22200 68 2.38e-05 GCTGTTGCGA ATGTTGATGTTGTGTACTTCT CGGGAGGGAG 21397 26 2.38e-05 GATGGTACTC TTGCAGATGGTCGATGTGTCG ATGTATTATA 31938 459 2.61e-05 CGGGGAGTAG TGGTCCTTCTCCCTCTGGGTG AGTGTGGGGT 35207 226 3.73e-05 TACGTTGTTT AGAGTCTTGGGTGTTTTGTTT GGTAACGTGT bd1709 52 4.83e-05 TTTATCTTTA TGTTTGTTCGTTCATATTGAT ATCCATCATC 20629 353 5.70e-05 ATGTTACGTC TGCCCGTCGGCGGTGTCTTCT TTCACCTTGC 21966 2 6.19e-05 C TTGTCGATTGTTTTCTTGTCA ATACCTCCAC 268048 142 7.26e-05 GGGGAGAGGT GGTGCCATCGTGCTGTGGTTG TGCTTATCAC 22985 182 7.26e-05 GACTCTACCG ATGGCGTCATTTTTTGGGGAG TGAAAGGAGA 22861 101 9.16e-05 ATGAATCGGA ATTGCGTTGTTTTGATTGGAT ACGAAGCGTT 36186 32 9.88e-05 AATGTCTCGT AGGAAGTTGTTCCTAATGGCG GTGGGCGATT 270145 346 9.88e-05 CCGGCCCTTC GGCTCGGCGTTCGGTTCGTCG CCGCCACCTC 24358 168 1.15e-04 TCAGAATTTG GTGGTGTTCATTCACTCTGCT GTCAGTAGCA 40223 303 1.32e-04 ATGTTGACTC TTTTCGAGCCTGTTTGTGTTG TTCAGCATCA 268970 345 1.32e-04 TTTCACCCTT TTGAAGGTTCTCGTTTTGTAG AAGTGTACGT 32788 83 1.75e-04 GGCATCGGCA TTCTCGATATGGTACTGTTCG GAATCAGACA 7742 205 1.87e-04 TCGTTGTAGT GTAGTGTTGCTGCAGTCTACT TTGTCTGGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 24867 1.6e-09 162_[+3]_317 38776 3.5e-08 204_[+3]_275 25277 3.5e-08 20_[+3]_459 33871 1.4e-07 402_[+3]_77 21933 3e-07 349_[+3]_130 30691 4e-07 383_[+3]_96 6250 6.1e-07 388_[+3]_91 261462 6.1e-07 96_[+3]_383 28441 7e-07 198_[+3]_281 17110 8e-07 125_[+3]_354 7151 9.2e-07 402_[+3]_77 28189 9.2e-07 129_[+3]_350 24123 9.2e-07 296_[+3]_183 268629 1.4e-06 260_[+3]_219 3018 1.8e-06 99_[+3]_380 20788 2e-06 309_[+3]_170 31047 2.3e-06 276_[+3]_203 22139 2.5e-06 321_[+3]_158 40341 3.2e-06 4_[+3]_475 32816 3.6e-06 50_[+3]_429 25799 3.6e-06 205_[+3]_274 35911 4.1e-06 454_[+3]_25 37071 5.7e-06 321_[+3]_158 36053 5.7e-06 259_[+3]_220 21050 6.4e-06 51_[+3]_428 33718 7.1e-06 37_[+3]_442 27873 7.1e-06 222_[+3]_257 bd621 7.9e-06 271_[+3]_208 5532 1.1e-05 106_[+3]_373 39022 1.1e-05 14_[+3]_465 36345 1.3e-05 229_[+3]_250 268688 1.3e-05 350_[+3]_129 23718 1.3e-05 289_[+3]_190 30454 1.6e-05 216_[+3]_263 26678 1.8e-05 301_[+3]_178 40044 2e-05 323_[+3]_156 32066 2e-05 202_[+3]_277 42515 2.2e-05 414_[+3]_65 20879 2.2e-05 302_[+3]_177 268745 2.4e-05 218_[+3]_261 22200 2.4e-05 67_[+3]_412 21397 2.4e-05 25_[+3]_454 31938 2.6e-05 458_[+3]_21 35207 3.7e-05 225_[+3]_254 bd1709 4.8e-05 51_[+3]_428 20629 5.7e-05 352_[+3]_127 21966 6.2e-05 1_[+3]_478 268048 7.3e-05 141_[+3]_338 22985 7.3e-05 181_[+3]_298 22861 9.2e-05 100_[+3]_379 36186 9.9e-05 31_[+3]_448 270145 9.9e-05 345_[+3]_134 24358 0.00011 167_[+3]_312 40223 0.00013 302_[+3]_177 268970 0.00013 344_[+3]_135 32788 0.00017 82_[+3]_397 7742 0.00019 204_[+3]_275 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=57 24867 ( 163) TTGTCGTTGTTGTTGTGTTTG 1 38776 ( 205) ATGTTGTTCGTGTTCTTGGTG 1 25277 ( 21) TTGTTGTTGTTGTTGATGATG 1 33871 ( 403) TGTTTGCTGTTGCTGTTGTTG 1 21933 ( 350) TGGTTGGTTGTTTTGTGGTTG 1 30691 ( 384) TTGGTGTTGTGGCTTGTTGTT 1 6250 ( 389) TTCATGTTGTTTGGTGTTGTG 1 261462 ( 97) GTGTTGTTGATCGTGTTGGCT 1 28441 ( 199) TTGTTCTCGTTTTTTTTTGTT 1 17110 ( 126) TGTTTGTTCTTGGGCTGTTTG 1 7151 ( 403) TTTGTGTTGGTGGTGGGGTAT 1 28189 ( 130) TTGGCGGCGGTGGAGGTGGTG 1 24123 ( 297) TTTTTCTTTTTGGATTTGTTG 1 268629 ( 261) TTGGCGGTGGGTGGGTTGGTG 1 3018 ( 100) TTGACGTCGTTGTTCTCGGCT 1 20788 ( 310) TTCCTGTTCATTGTTGGGGTG 1 31047 ( 277) AGATCGTTGGTGGTGAGTGTT 1 22139 ( 322) TGCTTGCTTGTGCTGTTGGCG 1 40341 ( 5) TTCATGGCGATGGTGTGTGTG 1 32816 ( 51) TGTTTGTGTTTGGATTTGGTG 1 25799 ( 206) AGCATGGTGTTTGATTCGGTG 1 35911 ( 455) TGGGTGATGTTGCGTCTGGTG 1 37071 ( 322) TTGATGTTCTTGTACTGTATT 1 36053 ( 260) TTGTTCGTGTTGCTTATGATT 1 21050 ( 52) AGGTTGTTGGTTCGTCGGGCG 1 33718 ( 38) ATACTGTTGCTTCTGTTTGTT 1 27873 ( 223) GTGCTGTTGGGTGAGTGGTCT 1 bd621 ( 272) TTAACGTTGTGCGTTAGGGTG 1 5532 ( 107) TTGCCGCTGCTGGTATGTGTG 1 39022 ( 15) TTGGTGGCTGCTGTGTTGTTG 1 36345 ( 230) TTGCCGATATTGGTGTTTACG 1 268688 ( 351) TGGTCGTTGAGGCAGGGTTTG 1 23718 ( 290) ATGATGACGTTGTTCTCTGTT 1 30454 ( 217) TTCATGTTGGTGGTTGCTGCA 1 26678 ( 302) AGTTTGTCCTTCGTTTCGTCT 1 40044 ( 324) ATATTGTTAGTGTATGGGTTT 1 32066 ( 203) GTGCTCTTGTCGCATTGGGTT 1 42515 ( 415) TGTTTGGCGGCCGGGTGGGTG 1 20879 ( 303) TTGCAGCTCTTTGTGAGGGTT 1 268745 ( 219) TGCTAGTTGGTGGCGTGGATG 1 22200 ( 68) ATGTTGATGTTGTGTACTTCT 1 21397 ( 26) TTGCAGATGGTCGATGTGTCG 1 31938 ( 459) TGGTCCTTCTCCCTCTGGGTG 1 35207 ( 226) AGAGTCTTGGGTGTTTTGTTT 1 bd1709 ( 52) TGTTTGTTCGTTCATATTGAT 1 20629 ( 353) TGCCCGTCGGCGGTGTCTTCT 1 21966 ( 2) TTGTCGATTGTTTTCTTGTCA 1 268048 ( 142) GGTGCCATCGTGCTGTGGTTG 1 22985 ( 182) ATGGCGTCATTTTTTGGGGAG 1 22861 ( 101) ATTGCGTTGTTTTGATTGGAT 1 36186 ( 32) AGGAAGTTGTTCCTAATGGCG 1 270145 ( 346) GGCTCGGCGTTCGGTTCGTCG 1 24358 ( 168) GTGGTGTTCATTCACTCTGCT 1 40223 ( 303) TTTTCGAGCCTGTTTGTGTTG 1 268970 ( 345) TTGAAGGTTCTCGTTTTGTAG 1 32788 ( 83) TTCTCGATATGGTACTGTTCG 1 7742 ( 205) GTAGTGTTGCTGCAGTCTACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 40320 bayes= 10.0884 E= 1.2e-012 -19 -1248 -98 134 -1248 -1248 53 134 -130 -46 112 -41 -57 -62 -20 83 -157 38 -1248 122 -1248 -98 186 -1248 -72 -179 -47 122 -1248 -33 -279 159 -189 -33 134 -106 -157 -146 53 89 -1248 -146 -98 163 -1248 -62 117 22 -1248 12 97 4 -8 -378 -62 118 -230 -62 67 66 -89 -279 -33 130 -1248 -46 67 78 -1248 -1248 142 46 -130 -1248 112 53 -157 30 -1248 126 -289 -1248 126 59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 57 E= 1.2e-012 0.228070 0.000000 0.122807 0.649123 0.000000 0.000000 0.350877 0.649123 0.105263 0.175439 0.526316 0.192982 0.175439 0.157895 0.210526 0.456140 0.087719 0.315789 0.000000 0.596491 0.000000 0.122807 0.877193 0.000000 0.157895 0.070175 0.175439 0.596491 0.000000 0.192982 0.035088 0.771930 0.070175 0.192982 0.614035 0.122807 0.087719 0.087719 0.350877 0.473684 0.000000 0.087719 0.122807 0.789474 0.000000 0.157895 0.543860 0.298246 0.000000 0.263158 0.473684 0.263158 0.245614 0.017544 0.157895 0.578947 0.052632 0.157895 0.385965 0.403509 0.140351 0.035088 0.192982 0.631579 0.000000 0.175439 0.385965 0.438596 0.000000 0.000000 0.649123 0.350877 0.105263 0.000000 0.526316 0.368421 0.087719 0.298246 0.000000 0.614035 0.035088 0.000000 0.578947 0.385965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [TA][TG]G[TG][TC]GTTG[TG]T[GT][GCT][TA][TG]T[TG][GT][GT][TC][GT] -------------------------------------------------------------------------------- Time 158.15 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10853 1.46e-04 186_[+1(9.21e-08)]_293 13224 9.06e-03 470_[+1(1.27e-05)]_9 15688 2.11e-03 365_[+2(4.42e-05)]_82_\ [+1(8.45e-06)]_11 17110 3.85e-08 125_[+3(8.02e-07)]_235_\ [+2(3.24e-05)]_48_[+1(4.79e-08)]_29 1835 4.69e-02 395_[+1(3.95e-05)]_84 20629 3.75e-05 55_[+2(2.73e-06)]_276_\ [+3(5.70e-05)]_46_[+1(1.71e-05)]_60 20788 1.25e-06 270_[+2(3.60e-05)]_18_\ [+3(1.99e-06)]_106_[+1(8.03e-07)]_43 20814 7.05e-03 249_[+2(9.38e-07)]_230 20879 6.86e-06 154_[+2(9.14e-06)]_127_\ [+3(2.16e-05)]_77_[+1(1.95e-06)]_58_[+1(1.71e-05)] 21050 2.21e-05 51_[+3(6.39e-06)]_32_[+2(1.32e-05)]_\ 327_[+1(1.71e-05)]_1_[+1(5.58e-05)]_5 21397 7.59e-05 25_[+3(2.38e-05)]_230_\ [+3(1.97e-05)]_65_[+1(7.60e-06)]_117 21682 9.68e-03 464_[+1(9.38e-06)]_15 21933 5.73e-07 6_[+2(1.49e-05)]_166_[+2(5.95e-05)]_\ 135_[+3(2.96e-07)]_109_[+1(5.50e-06)] 21966 1.07e-06 1_[+3(6.19e-05)]_412_[+1(2.28e-05)]_\ 24_[+1(2.86e-09)] 22139 1.20e-07 148_[+2(3.15e-06)]_152_\ [+3(2.54e-06)]_114_[+1(5.38e-07)]_23 22200 2.22e-05 42_[+2(8.06e-06)]_4_[+3(2.38e-05)]_\ 347_[+1(7.60e-06)]_11_[+1(1.41e-05)]_12 22599 1.23e-05 128_[+2(1.87e-05)]_298_\ [+1(4.70e-05)]_4_[+1(2.41e-08)]_7 22861 3.92e-05 35_[+2(4.03e-07)]_44_[+3(9.16e-05)]_\ 208_[+1(7.77e-05)]_150 22985 4.99e-08 [+2(4.80e-07)]_160_[+3(7.26e-05)]_\ 89_[+1(4.79e-08)]_149_[+1(2.78e-06)]_18 23106 5.20e-04 329_[+1(9.16e-07)]_34_\ [+2(7.20e-05)]_95 23354 1.17e-04 63_[+2(8.06e-06)]_123_\ [+1(2.75e-05)]_146_[+1(1.04e-06)]_55_[+1(1.27e-05)]_29 23718 1.06e-03 94_[+3(6.19e-05)]_19_[+1(6.60e-05)]_\ 84_[+3(9.16e-05)]_29_[+3(1.33e-05)]_168_[+1(2.28e-05)]_1 24038 2.30e-02 109_[+1(6.07e-05)]_20_\ [+2(5.40e-05)]_280_[+1(9.87e-05)]_28 24123 7.86e-06 39_[+1(9.12e-05)]_236_\ [+3(9.17e-07)]_67_[+2(5.46e-06)]_95 24358 1.07e-01 500 24632 2.79e-02 316_[+1(6.07e-05)]_76_\ [+2(6.55e-05)]_66 24867 2.90e-10 71_[+2(4.77e-06)]_70_[+3(1.63e-09)]_\ 175_[+1(6.07e-05)]_87_[+1(8.03e-07)]_13 25277 7.53e-09 20_[+3(3.50e-08)]_25_[+2(2.73e-06)]_\ 392_[+1(2.20e-06)] 25412 2.01e-02 204_[+1(1.27e-05)]_275 25799 4.71e-07 205_[+3(3.63e-06)]_5_[+2(5.70e-07)]_\ 224_[+1(9.38e-06)]_3 26071 1.55e-01 500 261109 8.03e-04 27_[+2(3.24e-05)]_114_\ [+1(9.12e-05)]_97_[+1(5.50e-06)]_199 261462 7.22e-07 18_[+2(5.46e-06)]_57_[+3(6.09e-07)]_\ 332_[+1(3.30e-05)]_1_[+1(9.38e-06)]_8 26678 4.71e-03 301_[+3(1.79e-05)]_178 268048 5.13e-06 104_[+2(5.40e-05)]_16_\ [+3(7.26e-05)]_127_[+1(5.58e-05)]_91_[+1(8.42e-05)]_13_[+1(9.21e-08)]_44 268629 5.93e-07 140_[+2(2.62e-05)]_99_\ [+3(1.36e-06)]_136_[+1(7.04e-07)]_62 268678 2.29e-04 [+2(1.32e-05)]_327_[+1(3.51e-06)]_\ 131 268688 4.64e-06 350_[+3(1.33e-05)]_10_\ [+2(2.73e-06)]_38_[+1(6.83e-06)]_39 268745 2.62e-03 218_[+3(2.38e-05)]_62_\ [+1(2.51e-05)]_178 268807 6.26e-03 54_[+2(8.66e-05)]_53_[+1(1.15e-05)]_\ 351 268970 1.66e-04 106_[+1(2.75e-05)]_158_\ [+3(4.08e-06)]_194 270145 1.28e-05 5_[+2(2.62e-05)]_319_[+3(9.88e-05)]_\ 30_[+1(3.07e-07)]_83 27873 2.66e-06 17_[+2(2.73e-06)]_38_[+1(6.83e-06)]_\ 125_[+3(7.13e-06)]_11_[+3(5.25e-05)]_225 28189 3.30e-07 129_[+3(9.17e-07)]_1_[+2(5.70e-07)]_\ 69_[+2(5.95e-05)]_164_[+1(2.51e-05)]_53 28441 4.67e-04 33_[+1(7.77e-05)]_144_\ [+3(6.99e-07)]_281 3018 5.45e-04 9_[+3(9.88e-05)]_69_[+3(1.76e-06)]_\ 380 30454 7.99e-06 188_[+2(9.38e-07)]_7_[+3(1.62e-05)]_\ 216_[+1(3.02e-05)]_26 30691 4.27e-05 83_[+1(3.02e-05)]_279_\ [+3(3.97e-07)]_96 31047 8.48e-06 37_[+1(2.78e-06)]_218_\ [+3(2.25e-06)]_15_[+2(7.90e-05)]_71_[+1(9.12e-05)]_75 31415 5.87e-04 236_[+2(2.36e-06)]_218_\ [+1(2.08e-05)]_4 31938 4.78e-04 22_[+2(6.55e-05)]_191_\ [+1(3.02e-05)]_203_[+3(2.61e-05)]_21 32066 3.22e-04 115_[+2(7.20e-05)]_66_\ [+3(1.97e-05)]_48_[+1(2.28e-05)]_208 32788 1.70e-05 114_[+2(4.16e-06)]_146_\ [+1(1.52e-06)]_104_[+1(7.16e-05)]_73 32790 2.92e-07 9_[+1(7.60e-06)]_167_[+2(1.49e-05)]_\ 38_[+2(3.60e-05)]_1_[+2(7.09e-06)]_55_[+2(5.51e-09)]_86_[+2(1.10e-06)]_18 32816 8.85e-05 50_[+3(3.63e-06)]_25_[+2(2.73e-06)]_\ 248_[+2(9.48e-05)]_114 33589 1.88e-06 289_[+3(2.54e-06)]_95_\ [+1(7.16e-05)]_51_[+1(4.40e-06)]_2 33718 2.97e-04 37_[+3(7.13e-06)]_93_[+2(2.34e-05)]_\ 328 33871 2.68e-09 281_[+2(5.46e-06)]_21_\ [+2(3.20e-09)]_61_[+3(8.33e-08)]_74 34348 5.16e-03 473_[+1(2.20e-06)]_6 34413 6.77e-03 181_[+2(2.10e-05)]_298 35207 1.23e-09 3_[+1(1.18e-09)]_65_[+2(2.92e-05)]_\ 12_[+2(6.75e-07)]_82_[+3(3.73e-05)]_254 35911 1.45e-05 256_[+1(8.45e-06)]_104_\ [+2(2.62e-05)]_52_[+3(4.08e-06)]_25 36053 1.65e-04 2_[+1(3.95e-05)]_98_[+2(6.55e-05)]_\ 117_[+3(5.73e-06)]_220 36186 2.40e-03 31_[+3(9.88e-05)]_96_[+3(4.07e-05)]_\ [+3(9.16e-05)]_310 36345 6.74e-06 11_[+2(2.62e-05)]_116_\ [+1(1.04e-05)]_60_[+3(1.33e-05)]_18_[+2(3.60e-05)]_31_[+2(2.73e-06)]_72_\ [+1(7.77e-05)]_66 37071 6.02e-08 6_[+1(2.20e-06)]_201_[+2(1.61e-07)]_\ 15_[+3(3.73e-05)]_36_[+3(5.73e-06)]_19_[+2(2.34e-05)]_118 37327 1.28e-01 500 38776 2.33e-06 53_[+3(1.60e-07)]_58_[+3(8.33e-08)]_\ 51_[+3(3.50e-08)]_230_[+1(5.12e-05)]_24 39022 9.49e-07 14_[+3(1.09e-05)]_144_\ [+2(3.38e-07)]_61_[+1(6.60e-05)]_17_[+1(1.15e-05)]_180 3944 3.70e-03 109_[+2(7.09e-06)]_370 40044 3.17e-02 323_[+3(1.97e-05)]_156 40223 3.67e-06 22_[+2(3.24e-05)]_143_\ [+2(3.63e-06)]_232_[+1(4.08e-07)]_40 40341 1.42e-05 4_[+3(3.23e-06)]_306_[+1(6.83e-06)]_\ 127_[+2(4.00e-05)] 42515 3.40e-09 274_[+1(7.53e-10)]_49_\ [+2(5.46e-06)]_49_[+3(2.16e-05)]_65 5294 4.15e-04 282_[+2(1.61e-07)]_197 5532 1.84e-05 44_[+2(7.20e-05)]_41_[+3(1.09e-05)]_\ 103_[+1(7.77e-05)]_174_[+1(8.42e-05)]_26_[+1(1.52e-06)]_7 6250 1.05e-09 126_[+1(2.01e-08)]_123_\ [+3(6.39e-06)]_6_[+2(2.04e-06)]_70_[+3(6.09e-07)]_91 6803 1.72e-01 500 7151 1.18e-05 151_[+1(7.60e-06)]_230_\ [+3(9.17e-07)]_77 7742 1.83e-05 281_[+2(1.08e-07)]_174_\ [+1(6.07e-05)]_3 8259 3.31e-04 76_[+2(4.16e-06)]_62_[+1(4.70e-05)]_\ 320 8997 3.24e-01 500 bd1709 1.33e-03 3_[+3(4.07e-05)]_27_[+3(4.83e-05)]_\ 368_[+1(6.60e-05)]_39 bd621 7.68e-06 148_[+1(6.83e-06)]_41_\ [+2(8.06e-06)]_40_[+3(7.94e-06)]_208 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************