******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/223/223.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 11606 1.0000 500 11824 1.0000 500 13378 1.0000 500 13982 1.0000 500 17654 1.0000 500 20682 1.0000 500 20739 1.0000 500 21305 1.0000 500 21929 1.0000 500 21979 1.0000 500 22036 1.0000 500 22045 1.0000 500 22296 1.0000 500 22628 1.0000 500 22635 1.0000 500 23209 1.0000 500 23242 1.0000 500 23277 1.0000 500 23300 1.0000 500 2392 1.0000 500 24180 1.0000 500 24217 1.0000 500 24679 1.0000 500 24715 1.0000 500 24878 1.0000 500 25139 1.0000 500 25359 1.0000 500 25800 1.0000 500 262041 1.0000 500 268027 1.0000 500 268136 1.0000 500 268145 1.0000 500 268417 1.0000 500 268486 1.0000 500 268596 1.0000 500 268744 1.0000 500 269049 1.0000 500 269449 1.0000 500 269559 1.0000 500 269975 1.0000 500 29705 1.0000 500 30862 1.0000 500 31215 1.0000 500 40265 1.0000 500 42152 1.0000 500 4372 1.0000 500 508 1.0000 500 5104 1.0000 500 5484 1.0000 500 6380 1.0000 500 6835 1.0000 500 8270 1.0000 500 bd74 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/223/223.seqs.fa -oc motifs/223 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 53 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 26500 N= 53 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.258 C 0.226 G 0.247 T 0.269 Background letter frequencies (from dataset with add-one prior applied): A 0.258 C 0.226 G 0.247 T 0.269 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 47 llr = 521 E-value = 1.7e-041 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 224:25::7:31622373:53 pos.-specific C 76397189:768337525634 probability G :22:121::2:::::1111:: matrix T 111:131:311:1411:1322 bits 2.1 1.9 1.7 * * 1.5 * * Relative 1.3 * ** * Entropy 1.1 * ** * (16.0 bits) 0.9 * ** **** * * 0.6 * ** ******* * * * 0.4 ** ** ******* ******* 0.2 ********************* 0.0 --------------------- Multilevel CCACCACCACCCATCCACCAC consensus AAC T T A CC ACATCA sequence TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 21305 434 5.00e-10 CCACCACGCT CCGCCACCACCCACCGACCAC ACCACGGACT 20682 443 1.28e-09 ACAAAACATC ACCCCACCACCCATCCCCCTA ATCTGGCTGG 269975 216 1.10e-08 CTTCCCTTCA CCACCACCACCAATCCATCCT TCCGTCCATC 13982 257 1.73e-08 AATCTATCAC CAACCTCCATCCATCTACCAA ACGTGCCATT 269049 443 4.66e-08 GTGATTTCGT CCACCTCCACTCATTCACTCA TCTCATCAGC 40265 375 6.10e-08 CGAACACACG CGACCACCACCAATCCAATCT TCCATCACCA 268027 382 6.10e-08 ATAGACATAA CCACAACCACCACCCAACCTC GTCTAACCTT 508 449 6.97e-08 TGCCCATCAA CACCAACCTCCCATCTAACCC CTCTCCTACA 268486 457 1.03e-07 ACCGCAACGC TCACCACCACACATCCATTCA GAACCTCACA 6380 306 1.93e-07 AACTCCCTCC TCCCCGCCTCACAACCAACAA AGCCAACACA 24715 432 1.93e-07 CCCAACCAAG CCACAGCCAGCCACACACTCC TTCCTCCACC 23300 421 3.11e-07 CTCCCTCTCA CCGCCGCCCCCCCCCTACCAC CAACTCTATC 25800 396 3.92e-07 CCGGACTCGT CAGCCGTCATCCACCAACCAC AACGCCACAA 5484 36 4.40e-07 GCAGAGCCAT CGACCCCCACACCGCCACCTC CTCCGTTCAA 2392 375 4.40e-07 CGAGCACCTC CTGCCACCATACACCAACTAC CGAAAAAGTA 21929 469 5.51e-07 CGGGAACACC CGACAGCCACACAGCAACCAC TCAACCGAAC 268596 84 8.56e-07 AGTTGTTATA CCACCACCTCCACTCCCAGCA ACAAGGAGGA 29705 412 9.53e-07 CCGCCTTTTA AATCCACCACCCATAACCCTA GATAAACTCT 268136 457 9.53e-07 ACCCTTCTTT CCCTCTCCTCCCTCCCAACCA CAACGTCTCC 13378 137 1.18e-06 TCCTTGGCAA ACACACCCACCCTTCTACCAT TCAAAGATAT 22045 467 1.61e-06 ATCAACACGT CCGCCATCACACCATCAACTC TCTCTCGAAC 17654 394 1.97e-06 AGCCAGCCTG CCGCCGCCACACATTCCATTT GCAAATCGGT 5104 55 2.18e-06 GCAACCCGCT CGCCCATCAGCCACACAATAT TATGATGAGG 30862 469 2.18e-06 ATTTGTTGGA CACCCAGCAGCAACCAACCAT TTTCTTTCAC 269559 479 2.93e-06 CATCAGTAGT CACACACCACTCATCACACAA A 31215 448 3.55e-06 TCTTCGTATC ACACCTCCTTCCCTCACCGCC CCGGTGCTCC 262041 468 3.90e-06 CCGAACACAC CAACCACTTGCCCTCCATCAA ACTGTGTACA 8270 440 4.29e-06 ACACAGTAAA CCTCCTCCTCCCACCTGTTAC AGTCGTGAGC 23209 337 5.66e-06 GAGCGGTGTG CGACCATCACTCTTCCCGCCA TTTCGTACTA 22036 281 6.20e-06 CAAATCGTGG ACACGATCTGCCACCAACCAT TCTATTCAGC 23242 480 6.79e-06 TTCCTAGCCG ACGCTTCCACACCACCTCCAC 20739 396 8.11e-06 GGCTGTACGC CCCCCCCCTCTCACTTCTCAC ATCGGCACTG 268145 423 8.86e-06 TTACATGGCA CACCACTCAGCCCCCCCCCTC CGTCGCACCA 22635 455 8.86e-06 TGTCTGTCCG CCGCCTCCACCCAAAGGCGCC CCGTCCCTAC 268417 85 9.67e-06 TTCTTACCAT CGCCCTCTTCCAATCCCCTCA ACGTCCCTTC 6835 446 1.05e-05 GCCAAAGTGG CACCGACCACACAAAAACAAA CCTCCCTCAC bd74 287 1.61e-05 CTACTCACGA ACACCACGATACATCATCCAC ATCATCAGAG 42152 202 1.61e-05 CAGAGCCCAA AGCCAACCACCGAAACAACAA GCCTTCGTCG 22296 244 1.61e-05 GCCGTGCGCC TCTCTTCCTCTCCTCCACCTA CAACCATTTC 11824 329 1.61e-05 GAGGGTTGTT TCACGGCCACACGTCCAACAT GCATAGGAAT 25359 21 1.75e-05 CCAATACAAT CCACCACCATCCTATCGGCAT CCCCCAACTT 11606 443 2.06e-05 TACTCCACTC CTCCCTCCATTCATCGAGTCC ATCCCCCTCT 22628 416 2.23e-05 CCGCCACTCG TTGCCTCCTCACCACCAATTC CTTAATACAA 24217 433 2.61e-05 CAACATCCTA ACCCCTGCTCCCTCACCATCC AAAGCTTCTT 268744 393 2.82e-05 CTTCCTGCGG CGATCTGCAGCCATCAACTTC GACTGGTGAA 23277 209 1.20e-04 ACATCATAGA AACCTACCACAACCAAAGCCT TATCCCTCAA 25139 259 1.88e-04 TTACCATCAA CCTCAGCCAGTCAAATAAAAA CACCACCACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 21305 5e-10 433_[+1]_46 20682 1.3e-09 442_[+1]_37 269975 1.1e-08 215_[+1]_264 13982 1.7e-08 256_[+1]_223 269049 4.7e-08 442_[+1]_37 40265 6.1e-08 374_[+1]_105 268027 6.1e-08 381_[+1]_98 508 7e-08 448_[+1]_31 268486 1e-07 456_[+1]_23 6380 1.9e-07 305_[+1]_174 24715 1.9e-07 431_[+1]_48 23300 3.1e-07 420_[+1]_59 25800 3.9e-07 395_[+1]_84 5484 4.4e-07 35_[+1]_444 2392 4.4e-07 374_[+1]_105 21929 5.5e-07 468_[+1]_11 268596 8.6e-07 83_[+1]_396 29705 9.5e-07 411_[+1]_68 268136 9.5e-07 456_[+1]_23 13378 1.2e-06 136_[+1]_343 22045 1.6e-06 466_[+1]_13 17654 2e-06 393_[+1]_86 5104 2.2e-06 54_[+1]_425 30862 2.2e-06 468_[+1]_11 269559 2.9e-06 478_[+1]_1 31215 3.5e-06 447_[+1]_32 262041 3.9e-06 467_[+1]_12 8270 4.3e-06 439_[+1]_40 23209 5.7e-06 336_[+1]_143 22036 6.2e-06 280_[+1]_199 23242 6.8e-06 479_[+1] 20739 8.1e-06 395_[+1]_84 268145 8.9e-06 422_[+1]_57 22635 8.9e-06 454_[+1]_25 268417 9.7e-06 84_[+1]_395 6835 1.1e-05 445_[+1]_34 bd74 1.6e-05 286_[+1]_193 42152 1.6e-05 201_[+1]_278 22296 1.6e-05 243_[+1]_236 11824 1.6e-05 328_[+1]_151 25359 1.7e-05 20_[+1]_459 11606 2.1e-05 442_[+1]_37 22628 2.2e-05 415_[+1]_64 24217 2.6e-05 432_[+1]_47 268744 2.8e-05 392_[+1]_87 23277 0.00012 208_[+1]_271 25139 0.00019 258_[+1]_221 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=47 21305 ( 434) CCGCCACCACCCACCGACCAC 1 20682 ( 443) ACCCCACCACCCATCCCCCTA 1 269975 ( 216) CCACCACCACCAATCCATCCT 1 13982 ( 257) CAACCTCCATCCATCTACCAA 1 269049 ( 443) CCACCTCCACTCATTCACTCA 1 40265 ( 375) CGACCACCACCAATCCAATCT 1 268027 ( 382) CCACAACCACCACCCAACCTC 1 508 ( 449) CACCAACCTCCCATCTAACCC 1 268486 ( 457) TCACCACCACACATCCATTCA 1 6380 ( 306) TCCCCGCCTCACAACCAACAA 1 24715 ( 432) CCACAGCCAGCCACACACTCC 1 23300 ( 421) CCGCCGCCCCCCCCCTACCAC 1 25800 ( 396) CAGCCGTCATCCACCAACCAC 1 5484 ( 36) CGACCCCCACACCGCCACCTC 1 2392 ( 375) CTGCCACCATACACCAACTAC 1 21929 ( 469) CGACAGCCACACAGCAACCAC 1 268596 ( 84) CCACCACCTCCACTCCCAGCA 1 29705 ( 412) AATCCACCACCCATAACCCTA 1 268136 ( 457) CCCTCTCCTCCCTCCCAACCA 1 13378 ( 137) ACACACCCACCCTTCTACCAT 1 22045 ( 467) CCGCCATCACACCATCAACTC 1 17654 ( 394) CCGCCGCCACACATTCCATTT 1 5104 ( 55) CGCCCATCAGCCACACAATAT 1 30862 ( 469) CACCCAGCAGCAACCAACCAT 1 269559 ( 479) CACACACCACTCATCACACAA 1 31215 ( 448) ACACCTCCTTCCCTCACCGCC 1 262041 ( 468) CAACCACTTGCCCTCCATCAA 1 8270 ( 440) CCTCCTCCTCCCACCTGTTAC 1 23209 ( 337) CGACCATCACTCTTCCCGCCA 1 22036 ( 281) ACACGATCTGCCACCAACCAT 1 23242 ( 480) ACGCTTCCACACCACCTCCAC 1 20739 ( 396) CCCCCCCCTCTCACTTCTCAC 1 268145 ( 423) CACCACTCAGCCCCCCCCCTC 1 22635 ( 455) CCGCCTCCACCCAAAGGCGCC 1 268417 ( 85) CGCCCTCTTCCAATCCCCTCA 1 6835 ( 446) CACCGACCACACAAAAACAAA 1 bd74 ( 287) ACACCACGATACATCATCCAC 1 42152 ( 202) AGCCAACCACCGAAACAACAA 1 22296 ( 244) TCTCTTCCTCTCCTCCACCTA 1 11824 ( 329) TCACGGCCACACGTCCAACAT 1 25359 ( 21) CCACCACCATCCTATCGGCAT 1 11606 ( 443) CTCCCTCCATTCATCGAGTCC 1 22628 ( 416) TTGCCTCCTCACCACCAATTC 1 24217 ( 433) ACCCCTGCTCCCTCACCATCC 1 268744 ( 393) CGATCTGCAGCCATCAACTTC 1 23277 ( 209) AACCTACCACAACCAAAGCCT 1 25139 ( 259) CCTCAGCCAGTCAAATAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 25440 bayes= 10.6521 E= 1.7e-041 -28 159 -1220 -134 -28 129 -54 -208 65 50 -37 -166 -359 205 -1220 -266 -60 164 -195 -208 86 -141 -54 4 -1220 184 -195 -108 -1220 205 -354 -266 145 -341 -1220 4 -1220 159 -54 -85 10 135 -1220 -85 -79 188 -354 -1220 126 18 -354 -134 -43 50 -254 73 -43 164 -1220 -134 10 118 -195 -85 136 5 -195 -266 21 118 -154 -134 -260 145 -195 4 86 50 -1220 -34 40 98 -1220 -34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 47 E= 1.7e-041 0.212766 0.680851 0.000000 0.106383 0.212766 0.553191 0.170213 0.063830 0.404255 0.319149 0.191489 0.085106 0.021277 0.936170 0.000000 0.042553 0.170213 0.702128 0.063830 0.063830 0.468085 0.085106 0.170213 0.276596 0.000000 0.808511 0.063830 0.127660 0.000000 0.936170 0.021277 0.042553 0.702128 0.021277 0.000000 0.276596 0.000000 0.680851 0.170213 0.148936 0.276596 0.574468 0.000000 0.148936 0.148936 0.829787 0.021277 0.000000 0.617021 0.255319 0.021277 0.106383 0.191489 0.319149 0.042553 0.446809 0.191489 0.702128 0.000000 0.106383 0.276596 0.510638 0.063830 0.148936 0.659574 0.234043 0.063830 0.042553 0.297872 0.510638 0.085106 0.106383 0.042553 0.617021 0.063830 0.276596 0.468085 0.319149 0.000000 0.212766 0.340426 0.446809 0.000000 0.212766 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CA][CA][AC]CC[AT]CC[AT]C[CA]C[AC][TC]C[CA][AC][CA][CT][ACT][CAT] -------------------------------------------------------------------------------- Time 21.85 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 53 llr = 474 E-value = 9.9e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 2122141:34:17326:4444 pos.-specific C 1::2121::1:41::::11:1 probability G 172363285255176:a3264 matrix T 52622172245:1:24:34:1 bits 2.1 1.9 * 1.7 * 1.5 * Relative 1.3 * * Entropy 1.1 * * * * (12.9 bits) 0.9 * * * * * 0.6 ** ** ******* * 0.4 ** * *** ******* ** 0.2 *** ***************** 0.0 --------------------- Multilevel TGTGGATGGAGGAGGAGAAGA consensus TAC GG ATTC ATT GTAG sequence GT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 269559 272 2.86e-09 AGAGGGGTGG TGTGGCTGAAGGAGGAGAAAA AAGACGGGAA 268596 257 4.50e-08 TTGGTTGGGT CGTTGGTGAGGGAGGAGAAGG ATTTGACACT 268486 273 1.42e-07 GTTGTTGTCC TGTTGGTGTTGCAGATGAAGA GGTGGATTTA 23277 367 3.97e-07 GGTGTTGGTG TGGCGATGAGGCAAGAGTTGA TTACTCTAGA 11606 227 6.40e-07 ACCGACACGT TGGCTGTTGTTGAGGAGAAGA AGAACAAATC 20682 161 7.47e-07 GATTGTGTTT TGTTGATGATGAAGGAGCAAA TGCATCACAC 13982 145 7.47e-07 AGCCATGAAA CGATGATGGATGAAAAGAAGG AAGATATTGA 25800 155 1.01e-06 TCTTTTGTGT AGGAGATGATTGAGGAGTGGA GAAGGAGAGT 40265 321 1.36e-06 TCTGTTTGTG TTTGGCTGAATCAGTTGATAG TTTTGCGACT 24715 258 2.38e-06 AACAGGCTCA TGTTGTTGTTTGAGGTGTGAG TCGGCCGGTG 23209 78 2.38e-06 GGTGCGAATG CGTTCATGGTTGAAGAGAGGA GAACCGGGGT 22635 256 4.03e-06 TGGCCGTCGG TGTAGGTGTAGCTGTAGTTGA ATGTCATCTT 5104 403 5.20e-06 CCCTTTGATT TGTCGAAGTAGAAGGTGATGG GTGAATTTTG 4372 356 5.20e-06 TTGGACTGCG TGAGGTTGCTTCAGGAGAAGA AAGTGTTGAA 25359 216 5.20e-06 GATTGATGGG TGGAGGAGGTTGAGAAGGTGA CTCCGTGATG 262041 170 5.88e-06 AGCATGAGTT TGTTCATGGTGCAGATGTGAA GTATGCGTTG 21979 304 6.65e-06 TTCTTCTACC CGTCGGGGGAGCAAGTGTTGC GGCACAAGAA 11824 260 6.65e-06 CATTGTCAGA AGAGGATGGATGGAGTGGAAA AGCGAGCGTG 2392 177 7.50e-06 GCTGTTTCGA TTTGAAGGGTTGAGAAGGTAG CAAGATACGC 31215 254 9.50e-06 ACGAGAGGAT TGTGACGGGTGGGAGAGAAGA AAGGGAGAGA 508 396 1.07e-05 GTGATGGCTC TGATGATGACTGCGTTGATGG CTGCCAAAAG 23242 366 1.07e-05 TGGTTTGTTC GGAGGCTGTAGGAGGAGGTAC CGATGTCGTC 24217 304 1.19e-05 CTTCAAGGAA GAGAGAGGGAGGAGGAGGAAG AACGGGGGAG 268136 382 1.49e-05 AAGGAGTAAT TGATGTTGAATCAGTAGACAA ATAGTAAGTT 24878 10 1.49e-05 TACGACCAC GATAGAGGAAGGAGGAGCAGG TGGAGCACTG 24679 39 1.67e-05 GAGCTGGAGG TGTGTGTGTGTGTGTAGGTGG CGAGAAGACG 24180 300 1.67e-05 AGGTGGATCG GATGACTGGTTGAGGTGATAG CTCACGGAGC 268027 10 1.86e-05 GTTCCGTCG AGAGTGTTGTTGAGTTGTAGA CGTTGTCGTT 30862 189 2.29e-05 GATGTGTTGA GGTCGGCGTTTGTGGAGAAGG ATGAGGTGGC 269449 251 2.29e-05 AAGATGCTCC TTTACATGTTGGAGTTGGTAA TAGTAGTCTT 13378 279 2.29e-05 CTGACTTTTC CTTGGGTTGGTGAAGAGAGAA GACTGCATAG bd74 431 2.54e-05 CGTACAGTCC CGGTGGTGAAGACGGAGTTAG CTTCGAGGCC 21929 287 2.81e-05 ATTTAGCGAA GATGGGTTGTTCAATTGAAGG ATGCCGAGAT 268145 149 3.11e-05 TATTGTTGGA TGTGAATGAATGCAAAGGTGC TGCAATATAT 269049 25 3.44e-05 ATACGAGTCA ATACGCTGGAGCTGGAGTTAA AGCAATGTAT 17654 221 3.44e-05 AAAGAAATGG AGACACTGATGCAGAAGAGGA GGTTAGTCTC 8270 264 4.59e-05 GTTGCGCCTG AGGCTACGAGGCAGGAGAAAG GCGGCGACGG 22628 289 5.53e-05 CCACGGCCAT CGGCGAGGAGTGGAGAGGTGG CGGTGAGATT 268744 207 6.06e-05 TTGTAGGACG TTGACATGGAGGCATAGTAGG CGATTCCTTT 21305 302 7.90e-05 GGGTTGTTGC AGTTGTTGTGGAAGAAGGGGA TTTTGGGGTG 6835 218 1.11e-04 AGAAATGATG AGGAGAGTGGTGAGGTGGCGA GGTGCACTGA 268417 215 1.11e-04 GGTTGCTTAT TTTGGATTGTTCGAGTGTTGT GGCGTTTGGA 23300 187 1.11e-04 ATCAGCTATT TTTCGCTGGCTCCGTTGATGT CACTCCGTTG 6380 66 1.30e-04 GGGCGTAGAG AGTTGGTGAGAGAGGCGGTGG ACGTCATGTT 42152 378 1.41e-04 TGAGTACAAG TATGGGTGGCGAAATCGAAGG CTTGCCAAAG 22036 181 1.41e-04 TTTGTAGGCT TGTGTAGTGAGGGGGTGGCAG GTGCCCAAAG 25139 143 2.93e-04 ACGTGGCGAC TTTTCGAGGTTCAAAAGCAAG TGATCGACGC 269975 129 3.14e-04 ATTTAACGAT TTGCTTTTGATAAGGAGCAAA TATTTTCCAC 22045 149 3.14e-04 TCAGCCGAGA TATCGAGGTCGGAGGGGGGGG GTTTACTATG 22296 162 4.33e-04 TCCGTTTTAA AGAGTGGTATGCAGTTGTTGT CGCCAGCGCC 29705 217 5.20e-04 GCTCGCTCAT GTTGTTTGGAGCTAGTGTAAC GATGAGCTCA 20739 2 5.51e-04 A TGAAAGCGGATCCAAAGGAGC AAAAGATGCA 5484 338 6.19e-04 ATTATCTCTA TTTCTGGTGAGCCGTTGTAAT TTTGATTGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 269559 2.9e-09 271_[+2]_208 268596 4.5e-08 256_[+2]_223 268486 1.4e-07 272_[+2]_207 23277 4e-07 366_[+2]_113 11606 6.4e-07 226_[+2]_253 20682 7.5e-07 160_[+2]_319 13982 7.5e-07 144_[+2]_335 25800 1e-06 154_[+2]_325 40265 1.4e-06 320_[+2]_159 24715 2.4e-06 257_[+2]_222 23209 2.4e-06 77_[+2]_402 22635 4e-06 255_[+2]_224 5104 5.2e-06 402_[+2]_77 4372 5.2e-06 355_[+2]_124 25359 5.2e-06 215_[+2]_264 262041 5.9e-06 169_[+2]_310 21979 6.6e-06 303_[+2]_176 11824 6.6e-06 259_[+2]_220 2392 7.5e-06 176_[+2]_303 31215 9.5e-06 253_[+2]_226 508 1.1e-05 395_[+2]_84 23242 1.1e-05 365_[+2]_114 24217 1.2e-05 303_[+2]_176 268136 1.5e-05 381_[+2]_98 24878 1.5e-05 9_[+2]_470 24679 1.7e-05 38_[+2]_441 24180 1.7e-05 299_[+2]_180 268027 1.9e-05 9_[+2]_470 30862 2.3e-05 188_[+2]_291 269449 2.3e-05 250_[+2]_229 13378 2.3e-05 278_[+2]_201 bd74 2.5e-05 430_[+2]_49 21929 2.8e-05 286_[+2]_193 268145 3.1e-05 148_[+2]_331 269049 3.4e-05 24_[+2]_455 17654 3.4e-05 220_[+2]_259 8270 4.6e-05 263_[+2]_216 22628 5.5e-05 288_[+2]_191 268744 6.1e-05 206_[+2]_273 21305 7.9e-05 301_[+2]_178 6835 0.00011 217_[+2]_262 268417 0.00011 214_[+2]_265 23300 0.00011 186_[+2]_293 6380 0.00013 65_[+2]_414 42152 0.00014 377_[+2]_102 22036 0.00014 180_[+2]_299 25139 0.00029 142_[+2]_337 269975 0.00031 128_[+2]_351 22045 0.00031 148_[+2]_331 22296 0.00043 161_[+2]_318 29705 0.00052 216_[+2]_263 20739 0.00055 1_[+2]_478 5484 0.00062 337_[+2]_142 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=53 269559 ( 272) TGTGGCTGAAGGAGGAGAAAA 1 268596 ( 257) CGTTGGTGAGGGAGGAGAAGG 1 268486 ( 273) TGTTGGTGTTGCAGATGAAGA 1 23277 ( 367) TGGCGATGAGGCAAGAGTTGA 1 11606 ( 227) TGGCTGTTGTTGAGGAGAAGA 1 20682 ( 161) TGTTGATGATGAAGGAGCAAA 1 13982 ( 145) CGATGATGGATGAAAAGAAGG 1 25800 ( 155) AGGAGATGATTGAGGAGTGGA 1 40265 ( 321) TTTGGCTGAATCAGTTGATAG 1 24715 ( 258) TGTTGTTGTTTGAGGTGTGAG 1 23209 ( 78) CGTTCATGGTTGAAGAGAGGA 1 22635 ( 256) TGTAGGTGTAGCTGTAGTTGA 1 5104 ( 403) TGTCGAAGTAGAAGGTGATGG 1 4372 ( 356) TGAGGTTGCTTCAGGAGAAGA 1 25359 ( 216) TGGAGGAGGTTGAGAAGGTGA 1 262041 ( 170) TGTTCATGGTGCAGATGTGAA 1 21979 ( 304) CGTCGGGGGAGCAAGTGTTGC 1 11824 ( 260) AGAGGATGGATGGAGTGGAAA 1 2392 ( 177) TTTGAAGGGTTGAGAAGGTAG 1 31215 ( 254) TGTGACGGGTGGGAGAGAAGA 1 508 ( 396) TGATGATGACTGCGTTGATGG 1 23242 ( 366) GGAGGCTGTAGGAGGAGGTAC 1 24217 ( 304) GAGAGAGGGAGGAGGAGGAAG 1 268136 ( 382) TGATGTTGAATCAGTAGACAA 1 24878 ( 10) GATAGAGGAAGGAGGAGCAGG 1 24679 ( 39) TGTGTGTGTGTGTGTAGGTGG 1 24180 ( 300) GATGACTGGTTGAGGTGATAG 1 268027 ( 10) AGAGTGTTGTTGAGTTGTAGA 1 30862 ( 189) GGTCGGCGTTTGTGGAGAAGG 1 269449 ( 251) TTTACATGTTGGAGTTGGTAA 1 13378 ( 279) CTTGGGTTGGTGAAGAGAGAA 1 bd74 ( 431) CGGTGGTGAAGACGGAGTTAG 1 21929 ( 287) GATGGGTTGTTCAATTGAAGG 1 268145 ( 149) TGTGAATGAATGCAAAGGTGC 1 269049 ( 25) ATACGCTGGAGCTGGAGTTAA 1 17654 ( 221) AGACACTGATGCAGAAGAGGA 1 8270 ( 264) AGGCTACGAGGCAGGAGAAAG 1 22628 ( 289) CGGCGAGGAGTGGAGAGGTGG 1 268744 ( 207) TTGACATGGAGGCATAGTAGG 1 21305 ( 302) AGTTGTTGTGGAAGAAGGGGA 1 6835 ( 218) AGGAGAGTGGTGAGGTGGCGA 1 268417 ( 215) TTTGGATTGTTCGAGTGTTGT 1 23300 ( 187) TTTCGCTGGCTCCGTTGATGT 1 6380 ( 66) AGTTGGTGAGAGAGGCGGTGG 1 42152 ( 378) TATGGGTGGCGAAATCGAAGG 1 22036 ( 181) TGTGTAGTGAGGGGGTGGCAG 1 25139 ( 143) TTTTCGAGGTTCAAAAGCAAG 1 269975 ( 129) TTGCTTTTGATAAGGAGCAAA 1 22045 ( 149) TATCGAGGTCGGAGGGGGGGG 1 22296 ( 162) AGAGTGGTATGCAGTTGTTGT 1 29705 ( 217) GTTGTTTGGAGCTAGTGTAAC 1 20739 ( 2) TGAAAGCGGATCCAAAGGAGC 1 5484 ( 338) TTTCTGGTGAGCCGTTGTAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 25440 bayes= 8.90388 E= 9.9e-014 -45 -77 -90 102 -119 -1237 142 -25 -31 -1237 -25 112 -60 12 46 -13 -119 -126 133 -66 62 -58 46 -125 -219 -200 -25 134 -1237 -1237 171 -51 23 -358 99 -51 55 -158 -54 49 -377 -1237 99 87 -119 67 109 -1237 140 -77 -139 -151 23 -1237 150 -1237 -45 -1237 119 -13 118 -258 -371 41 -1237 -1237 202 -1237 55 -158 19 -3 69 -200 -71 49 62 -1237 129 -1237 69 -126 75 -183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 53 E= 9.9e-014 0.188679 0.132075 0.132075 0.547170 0.113208 0.000000 0.660377 0.226415 0.207547 0.000000 0.207547 0.584906 0.169811 0.245283 0.339623 0.245283 0.113208 0.094340 0.622642 0.169811 0.396226 0.150943 0.339623 0.113208 0.056604 0.056604 0.207547 0.679245 0.000000 0.000000 0.811321 0.188679 0.301887 0.018868 0.490566 0.188679 0.377358 0.075472 0.169811 0.377358 0.018868 0.000000 0.490566 0.490566 0.113208 0.358491 0.528302 0.000000 0.679245 0.132075 0.094340 0.094340 0.301887 0.000000 0.698113 0.000000 0.188679 0.000000 0.566038 0.245283 0.584906 0.037736 0.018868 0.358491 0.000000 0.000000 1.000000 0.000000 0.377358 0.075472 0.283019 0.264151 0.415094 0.056604 0.150943 0.377358 0.396226 0.000000 0.603774 0.000000 0.415094 0.094340 0.415094 0.075472 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- T[GT][TAG][GCT]G[AG][TG]G[GA][AT][GT][GC]A[GA][GT][AT]G[AGT][AT][GA][AG] -------------------------------------------------------------------------------- Time 42.55 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 12 sites = 41 llr = 351 E-value = 1.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :8:35418237: pos.-specific C 8:94169:85:7 probability G 2:::2:::::11 matrix T :2131::2:212 bits 2.1 1.9 1.7 * * 1.5 * * * Relative 1.3 * * ** Entropy 1.1 *** *** (12.4 bits) 0.9 *** **** ** 0.6 *** ******* 0.4 **** ******* 0.2 ************ 0.0 ------------ Multilevel CACCACCACCAC consensus T AGA A T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 25139 280 3.02e-08 CAAATAAAAA CACCACCACCAC TCGGAAGAGT 25800 422 3.36e-07 ACCACAACGC CACAACCACAAC CATCCATTAG 508 199 4.49e-07 CTCTCCGCCA CACCGACACCAC ACCTCCTGTT 268417 31 6.61e-07 CTCTTTCCGG CACCACCACCAT TGTTGTTGTT 268145 452 1.77e-06 TCCGTCGCAC CACACACACCAC CACAGTCGCT 13378 488 1.77e-06 CGTCTCACAA CACACACACCAC C 269975 428 3.39e-06 GGAAGCAGAT CTCAGCCACCAC TTCAACTCGC 22036 472 4.70e-06 GTGTCAGCGT CACAACCACAGC ACCCATCACA 22045 129 6.48e-06 ACTAGCCTGA CACTAACACCTC AGCCGAGATA 11606 418 6.48e-06 CGGCTCGGTG CACAGACACTAC AGTTACTCCA 268486 197 9.19e-06 CATGACTCAC CTCATCCACCAC AATACTGTAC 31215 488 1.33e-05 CGTCAACATA GACCAACACTAC C 24715 467 1.33e-05 TCCACCCGAC GACCCCCACAAC GATCCACCAC 268744 325 1.87e-05 ATAATAATAC CACTGCCACCAG AGGAAGGCAG 20682 489 1.87e-05 ACTGTCGGTG CACTGCCTCAAC 22635 489 2.27e-05 TCCCTACACA CATCAACACAAC 8270 479 2.57e-05 GCTCATGGTA CACCGCCTCCTC CTACCTCTCC 2392 252 2.84e-05 TTCTTGTTTA CACAGCCACAAG TTATGTAGCT 24217 155 3.43e-05 GCTTTCTTAC CACCGCCATCAC TTGGTGATAA 25359 6 5.07e-05 ACTCC CACTCCCAATAC AATCCACCAC 21929 132 5.56e-05 GTCTTGACGT CTCCACCAGCAC AAAAAGCCGG 5104 434 6.08e-05 GTGAATTTTG CACCCACAACTC ACTGTTGTCT 42152 256 6.08e-05 CACAGCAAGT GACAAACTCAAC ACGGGAAAAA 23209 384 6.08e-05 ATTTGTTTCT CTCTACCACCGT CGTGTCCTAA 22628 398 6.08e-05 TCCACTTGTT CTCAACCTCCGC CACTCGTTGC 21305 468 6.08e-05 ACGGACTCGT CTCCTACACCTC AAACAAATCT 17654 438 7.24e-05 TCTCGACGAA GTCCAACAACAC CTTTTGTACC 269449 47 7.94e-05 CTTTGAATGA GACCTCCACAAT TACCCTCGCC 24180 481 9.34e-05 TTCCAAGTGA GACAACAACAAC GATCCACG 23300 397 1.10e-04 GTCCGTCCGT CACCGGCACCTC TCCTCCCTCT 13982 468 1.19e-04 GTTCAGCGCT CTCTAACAACGC TTGTTCTCTC bd74 157 1.29e-04 ATCACATCAT CATCACCAACAT TAACGTCACC 6380 468 1.39e-04 CAAGACCACA CACATCAACCAT ACCGTCGCAC 29705 473 1.39e-04 CTTCTCTCAC CACAAACTACTC CTCGGCCATC 269049 206 1.39e-04 GGTTACTGAG CACCACCTCTGT CGTTTCGTGG 6835 243 1.62e-04 TGGCGAGGTG CACTGACACTGT GTTTGATTGT 268136 339 1.62e-04 GTGTCTACTA CATTACCACTAT TGATAACAAG 40265 427 2.03e-04 CCGCACCATA CACCAACTCAAA AGCTTCGCAC 23277 139 2.03e-04 GTGTTTGATA GACTTACACAAT AGCGCTGTCT 24679 441 2.50e-04 TCGTTGACCA CTCTACCAAAAG GAATAAGGTG 5484 94 3.07e-04 GATCACCGTC CTCTCCAACTAC TGCACTGTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 25139 3e-08 279_[+3]_209 25800 3.4e-07 421_[+3]_67 508 4.5e-07 198_[+3]_290 268417 6.6e-07 30_[+3]_458 268145 1.8e-06 451_[+3]_37 13378 1.8e-06 487_[+3]_1 269975 3.4e-06 427_[+3]_61 22036 4.7e-06 471_[+3]_17 22045 6.5e-06 128_[+3]_360 11606 6.5e-06 417_[+3]_71 268486 9.2e-06 196_[+3]_292 31215 1.3e-05 487_[+3]_1 24715 1.3e-05 466_[+3]_22 268744 1.9e-05 324_[+3]_164 20682 1.9e-05 488_[+3] 22635 2.3e-05 488_[+3] 8270 2.6e-05 478_[+3]_10 2392 2.8e-05 251_[+3]_237 24217 3.4e-05 154_[+3]_334 25359 5.1e-05 5_[+3]_483 21929 5.6e-05 131_[+3]_357 5104 6.1e-05 433_[+3]_55 42152 6.1e-05 255_[+3]_233 23209 6.1e-05 383_[+3]_105 22628 6.1e-05 397_[+3]_91 21305 6.1e-05 467_[+3]_21 17654 7.2e-05 437_[+3]_51 269449 7.9e-05 46_[+3]_442 24180 9.3e-05 480_[+3]_8 23300 0.00011 396_[+3]_92 13982 0.00012 467_[+3]_21 bd74 0.00013 156_[+3]_332 6380 0.00014 467_[+3]_21 29705 0.00014 472_[+3]_16 269049 0.00014 205_[+3]_283 6835 0.00016 242_[+3]_246 268136 0.00016 338_[+3]_150 40265 0.0002 426_[+3]_62 23277 0.0002 138_[+3]_350 24679 0.00025 440_[+3]_48 5484 0.00031 93_[+3]_395 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=12 seqs=41 25139 ( 280) CACCACCACCAC 1 25800 ( 422) CACAACCACAAC 1 508 ( 199) CACCGACACCAC 1 268417 ( 31) CACCACCACCAT 1 268145 ( 452) CACACACACCAC 1 13378 ( 488) CACACACACCAC 1 269975 ( 428) CTCAGCCACCAC 1 22036 ( 472) CACAACCACAGC 1 22045 ( 129) CACTAACACCTC 1 11606 ( 418) CACAGACACTAC 1 268486 ( 197) CTCATCCACCAC 1 31215 ( 488) GACCAACACTAC 1 24715 ( 467) GACCCCCACAAC 1 268744 ( 325) CACTGCCACCAG 1 20682 ( 489) CACTGCCTCAAC 1 22635 ( 489) CATCAACACAAC 1 8270 ( 479) CACCGCCTCCTC 1 2392 ( 252) CACAGCCACAAG 1 24217 ( 155) CACCGCCATCAC 1 25359 ( 6) CACTCCCAATAC 1 21929 ( 132) CTCCACCAGCAC 1 5104 ( 434) CACCCACAACTC 1 42152 ( 256) GACAAACTCAAC 1 23209 ( 384) CTCTACCACCGT 1 22628 ( 398) CTCAACCTCCGC 1 21305 ( 468) CTCCTACACCTC 1 17654 ( 438) GTCCAACAACAC 1 269449 ( 47) GACCTCCACAAT 1 24180 ( 481) GACAACAACAAC 1 23300 ( 397) CACCGGCACCTC 1 13982 ( 468) CTCTAACAACGC 1 bd74 ( 157) CATCACCAACAT 1 6380 ( 468) CACATCAACCAT 1 29705 ( 473) CACAAACTACTC 1 269049 ( 206) CACCACCTCTGT 1 6835 ( 243) CACTGACACTGT 1 268136 ( 339) CATTACCACTAT 1 40265 ( 427) CACCAACTCAAA 1 23277 ( 139) GACTTACACAAT 1 24679 ( 441) CTCTACCAAAAG 1 5484 ( 94) CTCTCCAACTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 25917 bayes= 10.2681 E= 1.1e-003 -1200 188 -53 -1200 155 -1200 -1200 -14 -1200 204 -1200 -188 30 88 -1200 0 92 -63 -2 -114 60 137 -334 -1200 -181 204 -1200 -1200 169 -1200 -1200 -66 -59 179 -334 -346 18 125 -1200 -66 146 -1200 -76 -88 -340 160 -176 -29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 41 E= 1.1e-003 0.000000 0.829268 0.170732 0.000000 0.756098 0.000000 0.000000 0.243902 0.000000 0.926829 0.000000 0.073171 0.317073 0.414634 0.000000 0.268293 0.487805 0.146341 0.243902 0.121951 0.390244 0.585366 0.024390 0.000000 0.073171 0.926829 0.000000 0.000000 0.829268 0.000000 0.000000 0.170732 0.170732 0.780488 0.024390 0.024390 0.292683 0.536585 0.000000 0.170732 0.707317 0.000000 0.146341 0.146341 0.024390 0.682927 0.073171 0.219512 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- C[AT]C[CAT][AG][CA]CAC[CA]A[CT] -------------------------------------------------------------------------------- Time 62.16 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 11606 1.81e-06 226_[+2(6.40e-07)]_170_\ [+3(6.48e-06)]_13_[+1(2.06e-05)]_37 11824 1.20e-03 259_[+2(6.65e-06)]_48_\ [+1(1.61e-05)]_151 13378 1.08e-06 136_[+1(1.18e-06)]_121_\ [+2(2.29e-05)]_188_[+3(1.77e-06)]_1 13982 4.66e-08 144_[+2(7.47e-07)]_55_\ [+1(8.86e-06)]_15_[+1(1.73e-08)]_223 17654 6.44e-05 220_[+2(3.44e-05)]_152_\ [+1(1.97e-06)]_23_[+3(7.24e-05)]_51 20682 7.80e-10 160_[+2(7.47e-07)]_261_\ [+1(1.28e-09)]_25_[+3(1.87e-05)] 20739 2.04e-02 395_[+1(8.11e-06)]_84 21305 2.74e-09 301_[+2(7.90e-05)]_111_\ [+1(5.00e-10)]_13_[+3(6.08e-05)]_21 21929 5.39e-06 131_[+3(5.56e-05)]_143_\ [+2(2.81e-05)]_161_[+1(5.51e-07)]_11 21979 5.76e-02 303_[+2(6.65e-06)]_176 22036 5.47e-05 280_[+1(6.20e-06)]_170_\ [+3(4.70e-06)]_17 22045 4.33e-05 128_[+3(6.48e-06)]_326_\ [+1(1.61e-06)]_13 22296 1.42e-02 243_[+1(1.61e-05)]_236 22628 5.22e-04 288_[+2(5.53e-05)]_88_\ [+3(6.08e-05)]_6_[+1(2.23e-05)]_64 22635 1.35e-05 255_[+2(4.03e-06)]_178_\ [+1(8.86e-06)]_13_[+3(2.27e-05)] 23209 1.35e-05 77_[+2(2.38e-06)]_238_\ [+1(5.66e-06)]_26_[+3(6.08e-05)]_105 23242 1.67e-06 365_[+2(1.07e-05)]_102_\ [+3(1.07e-06)] 23277 2.43e-05 215_[+3(3.43e-05)]_43_\ [+2(8.62e-05)]_75_[+2(3.97e-07)]_113 23300 2.79e-05 420_[+1(3.11e-07)]_59 2392 1.97e-06 38_[+2(4.59e-05)]_117_\ [+2(7.50e-06)]_54_[+3(2.84e-05)]_111_[+1(4.40e-07)]_105 24180 1.25e-02 299_[+2(1.67e-05)]_160_\ [+3(9.34e-05)]_8 24217 1.28e-04 154_[+3(3.43e-05)]_137_\ [+2(1.19e-05)]_108_[+1(2.61e-05)]_47 24679 1.38e-02 38_[+2(1.67e-05)]_441 24715 1.67e-07 257_[+2(2.38e-06)]_153_\ [+1(1.93e-07)]_14_[+3(1.33e-05)]_4_[+3(1.87e-05)]_6 24878 2.97e-02 9_[+2(1.49e-05)]_470 25139 2.31e-05 279_[+3(3.02e-08)]_142_\ [+3(2.06e-05)]_55 25359 6.13e-05 5_[+3(5.07e-05)]_3_[+1(1.75e-05)]_\ 174_[+2(5.20e-06)]_264 25800 5.05e-09 51_[+2(2.54e-05)]_82_[+2(1.01e-06)]_\ 220_[+1(3.92e-07)]_5_[+3(3.36e-07)]_67 262041 1.11e-05 169_[+2(5.88e-06)]_277_\ [+1(3.90e-06)]_12 268027 2.89e-09 9_[+2(1.86e-05)]_351_[+1(6.10e-08)]_\ 22_[+1(1.36e-05)]_55 268136 3.28e-05 381_[+2(1.49e-05)]_54_\ [+1(9.53e-07)]_23 268145 8.59e-06 148_[+2(3.11e-05)]_253_\ [+1(8.86e-06)]_8_[+3(1.77e-06)]_37 268417 1.17e-05 30_[+3(6.61e-07)]_42_[+1(9.67e-06)]_\ 395 268486 5.07e-09 196_[+3(9.19e-06)]_64_\ [+2(1.42e-07)]_163_[+1(1.03e-07)]_23 268596 1.71e-09 83_[+1(8.56e-07)]_3_[+2(1.80e-06)]_\ 128_[+2(4.50e-08)]_27_[+2(2.29e-05)]_175 268744 3.24e-04 206_[+2(6.06e-05)]_97_\ [+3(1.87e-05)]_56_[+1(2.82e-05)]_87 269049 1.56e-06 24_[+2(3.44e-05)]_397_\ [+1(4.66e-08)]_37 269449 8.60e-03 46_[+3(7.94e-05)]_192_\ [+2(2.29e-05)]_229 269559 1.71e-08 271_[+2(2.86e-09)]_61_\ [+1(6.20e-06)]_104_[+1(2.93e-06)]_1 269975 3.76e-09 215_[+1(1.10e-08)]_38_\ [+1(9.13e-05)]_18_[+3(8.62e-05)]_102_[+3(3.39e-06)]_61 29705 5.59e-04 411_[+1(9.53e-07)]_24_\ [+1(7.95e-05)]_23 30862 3.99e-04 188_[+2(2.29e-05)]_259_\ [+1(2.18e-06)]_11 31215 7.95e-06 253_[+2(9.50e-06)]_54_\ [+3(7.24e-05)]_107_[+1(3.55e-06)]_19_[+3(1.33e-05)]_1 40265 1.77e-07 320_[+2(1.36e-06)]_33_\ [+1(6.10e-08)]_1_[+1(2.23e-05)]_83 42152 8.02e-04 201_[+1(1.61e-05)]_33_\ [+3(6.08e-05)]_233 4372 2.25e-02 355_[+2(5.20e-06)]_124 508 1.17e-08 198_[+3(4.49e-07)]_58_\ [+3(4.21e-06)]_115_[+2(1.07e-05)]_32_[+1(6.97e-08)]_31 5104 1.16e-05 29_[+1(4.81e-05)]_4_[+1(2.18e-06)]_\ 327_[+2(5.20e-06)]_10_[+3(6.08e-05)]_55 5484 1.34e-05 35_[+1(4.40e-07)]_444 6380 3.79e-05 305_[+1(1.93e-07)]_174 6835 1.40e-03 445_[+1(1.05e-05)]_34 8270 6.65e-05 263_[+2(4.59e-05)]_155_\ [+1(4.29e-06)]_18_[+3(2.57e-05)]_10 bd74 4.90e-04 286_[+1(1.61e-05)]_123_\ [+2(2.54e-05)]_49 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************