******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/224/224.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10608 1.0000 500 14597 1.0000 500 18198 1.0000 500 20731 1.0000 500 21110 1.0000 500 21363 1.0000 500 21553 1.0000 500 21725 1.0000 500 21781 1.0000 500 22099 1.0000 500 22462 1.0000 500 22841 1.0000 500 22999 1.0000 500 23210 1.0000 500 23737 1.0000 500 23847 1.0000 500 24904 1.0000 500 25034 1.0000 500 25124 1.0000 500 25448 1.0000 500 25582 1.0000 500 25746 1.0000 500 261885 1.0000 500 262775 1.0000 500 262862 1.0000 500 268003 1.0000 500 28300 1.0000 500 28755 1.0000 500 30871 1.0000 500 31465 1.0000 500 31710 1.0000 500 32414 1.0000 500 34221 1.0000 500 34735 1.0000 500 34826 1.0000 500 34959 1.0000 500 35041 1.0000 500 35682 1.0000 500 36406 1.0000 500 37374 1.0000 500 37881 1.0000 500 39003 1.0000 500 3919 1.0000 500 40509 1.0000 500 5237 1.0000 500 5421 1.0000 500 5906 1.0000 500 6842 1.0000 500 bd1807 1.0000 500 bd196 1.0000 500 bd381 1.0000 500 bd524 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/224/224.seqs.fa -oc motifs/224 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 52 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 26000 N= 52 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.260 C 0.237 G 0.240 T 0.263 Background letter frequencies (from dataset with add-one prior applied): A 0.260 C 0.237 G 0.240 T 0.263 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 46 llr = 481 E-value = 9.3e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 5143:445:531752431741 pos.-specific C 273376629528257439318 probability G :1::2::1::2:1:::::::1 matrix T 31231::2::31::123::4: bits 2.1 1.9 1.7 1.5 * * Relative 1.2 * * * Entropy 1.0 * ** * * * (15.1 bits) 0.8 *** ** * ** * 0.6 ** *** ** **** ** * 0.4 ** **** ** ********** 0.2 ********** ********** 0.0 --------------------- Multilevel ACACCCCACAACAACATCATC consensus T CA AAT CT CACA CA sequence TT G TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 34221 480 3.65e-10 CGCCTTCTCC ACACCACACATCAACAACATC 36406 480 1.49e-08 CTCTCTAACA AAAACACACAACACCAACATC bd381 115 3.41e-08 CCACCATGCA ACATGCAACAACAACTTCATC TCTCTACAAT 28300 445 4.67e-08 GGGAAGGTTC ACTCCCCACCACCCACCCAAC TCAAAACCCT bd196 416 1.72e-07 GAACACAATA CCAATACACAACAACAACAAC AATAACAACA 21553 74 1.72e-07 CAACTAATTC TCCACCACCCACCACCACATC CCGCACGCCG 20731 442 2.25e-07 ACTTCCGCCG ACCACACACCCCACCCCGAAC ACGTCTGCCG 40509 398 2.57e-07 TCCCTTCCAA ACCTCCCAACCCAACAACAAC TTGCTTGCCA 261885 403 2.93e-07 ATCACTTCGC ACACCACACCGCACCACCACA GCTCACTTCA 5906 460 3.33e-07 TACGACGACG AGACGACACATCAACATCAAC TGCATTCATC 262775 458 3.33e-07 GTACGTCCAT TTACCCATCATCAACATCATC ACAAATACCT 25746 360 4.28e-07 CAGCCAGCCA ACAACAAGCCACAACACCAAG ATGCCCCAAC 23210 421 4.28e-07 TCATACGTTC TCCTCCCTCCTCGACCACCAC GTCCCCTCCC 37881 3 8.81e-07 AA AACACCACCACCAACCTCCTC ACCACTATCC 3919 303 1.55e-06 ACTGCGCTTA ACATCAGTCACCACCACCACC AAAACGAACG 31465 327 2.39e-06 ACAACCCACA ACACAACACAACGCCTCCCTC TTTCCATCAT 262862 447 2.39e-06 TTCTTCTACC ACACCAGACCACACGTCCATC GTTCACAAAT 21781 235 2.39e-06 CATTTCACCA CTCACCCGCCGCAACCACCTC GCAACCACGC bd1807 457 2.65e-06 ACTGCGGCAC CAATCAACCATCAACCTCCTC CATCCACCAA 21725 16 2.94e-06 CGGTTGATGA TCCCGCATCACCGACACCAAC CCAGCCTCCT 21110 28 2.94e-06 CAACAAACTC TCTTGCAACAACGCCTCCCTC AGTTCATCGC 39003 472 3.99e-06 GTGGTTGACA ATCTCAATCAGCACCAACAAG TAGATAAC 25582 184 4.41e-06 CTCACATCTC ACATCCCATATCATCCACCAC ACACTTTCTC 34735 475 4.86e-06 CACCGGCACC ACCACACGCAACACACCACAC GCAAC 268003 473 5.36e-06 GCTGCTGCCT CCGACCACCCTCAACTTCACC GCAACCA 25124 421 5.36e-06 CACCGTTCTC TGCACCAACATCACTCTCCTC AGTGGAGTCA 31710 413 1.03e-05 GGAGCTTTCC CCTTCCCACCACAGCCACCCG TTCATCGTCC 28755 334 1.03e-05 CTCGCGTCCA ACCACCCCTCGAACCCTCCTC GACGACGACA 22099 148 1.03e-05 TCATTGCCTT TGTACACACCTCAGAATCATC GTCTGATGGA 14597 128 1.03e-05 TGTGAGTAAT ACAACCCGCAGAACACACAGC AGCCAAGCAA 10608 254 1.13e-05 GCTTCCCCCC ACATCCCCCCTAAAATTCAGC GGGGCACTGC 34959 479 1.24e-05 CAACTTCTTG TCATCAAACAATAAAATCATA G 35682 345 1.48e-05 CAAATAACAA CAAAGCAACAGCAACCAAAAC TTTCAAAGCA 22841 432 1.61e-05 TCGAAACACA AACTCAAACAGCACCTCCTCC GCCTCCTCTA 32414 31 2.45e-05 GGAGGAGAAC AGTCCAAACAGCAAACAAACC AGCATCAGGA 35041 382 3.13e-05 TCGTCTGCCA ACGCCCCCCCCCCTCTCCCTC TCTCCACCAA 22999 248 3.13e-05 GAGCTGTTCA ACTTGCAACCGCTCTCTCATC TGACGACGCT 25034 478 3.38e-05 TGATCAGCAT TTTCACAACCACACCACAAAC CA 23847 394 3.38e-05 CCGATCCCTC ACTCTCCTCATAGCCTTCCTC CTCATGGTCC 18198 463 3.38e-05 GCCAAGGATA CCACCACTCCATCCAAACAAG ATGATTCCAA 34826 289 3.96e-05 ACCCAAACGA TCCTTCCAACACAACCCCTTC CTACAACCGA 21363 453 4.28e-05 TGAGACTCTT TCTCGCCACCAACCACTCAAG TCAAAGCGAG 5237 36 4.62e-05 CTCCATTGCG ATACCACACCCTGAGATCAAC AGTAGAGTCG 5421 478 4.98e-05 CATCGTTTTC TCTCCCCTCCCTCATATCCAC CG 25448 220 5.78e-05 GGATAAGTTT TCTATCCTCATCACCAAGATG AGTAGATACA 6842 390 1.53e-04 TCATAAACAG CCATCCATCCGTCCATCCAAA CCGCCTGCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 34221 3.6e-10 479_[+1] 36406 1.5e-08 479_[+1] bd381 3.4e-08 114_[+1]_365 28300 4.7e-08 444_[+1]_35 bd196 1.7e-07 415_[+1]_64 21553 1.7e-07 73_[+1]_406 20731 2.3e-07 441_[+1]_38 40509 2.6e-07 397_[+1]_82 261885 2.9e-07 402_[+1]_77 5906 3.3e-07 459_[+1]_20 262775 3.3e-07 457_[+1]_22 25746 4.3e-07 359_[+1]_120 23210 4.3e-07 420_[+1]_59 37881 8.8e-07 2_[+1]_477 3919 1.6e-06 302_[+1]_177 31465 2.4e-06 326_[+1]_153 262862 2.4e-06 446_[+1]_33 21781 2.4e-06 234_[+1]_245 bd1807 2.6e-06 456_[+1]_23 21725 2.9e-06 15_[+1]_464 21110 2.9e-06 27_[+1]_452 39003 4e-06 471_[+1]_8 25582 4.4e-06 183_[+1]_296 34735 4.9e-06 474_[+1]_5 268003 5.4e-06 472_[+1]_7 25124 5.4e-06 420_[+1]_59 31710 1e-05 412_[+1]_67 28755 1e-05 333_[+1]_146 22099 1e-05 147_[+1]_332 14597 1e-05 127_[+1]_352 10608 1.1e-05 253_[+1]_226 34959 1.2e-05 478_[+1]_1 35682 1.5e-05 344_[+1]_135 22841 1.6e-05 431_[+1]_48 32414 2.5e-05 30_[+1]_449 35041 3.1e-05 381_[+1]_98 22999 3.1e-05 247_[+1]_232 25034 3.4e-05 477_[+1]_2 23847 3.4e-05 393_[+1]_86 18198 3.4e-05 462_[+1]_17 34826 4e-05 288_[+1]_191 21363 4.3e-05 452_[+1]_27 5237 4.6e-05 35_[+1]_444 5421 5e-05 477_[+1]_2 25448 5.8e-05 219_[+1]_260 6842 0.00015 389_[+1]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=46 34221 ( 480) ACACCACACATCAACAACATC 1 36406 ( 480) AAAACACACAACACCAACATC 1 bd381 ( 115) ACATGCAACAACAACTTCATC 1 28300 ( 445) ACTCCCCACCACCCACCCAAC 1 bd196 ( 416) CCAATACACAACAACAACAAC 1 21553 ( 74) TCCACCACCCACCACCACATC 1 20731 ( 442) ACCACACACCCCACCCCGAAC 1 40509 ( 398) ACCTCCCAACCCAACAACAAC 1 261885 ( 403) ACACCACACCGCACCACCACA 1 5906 ( 460) AGACGACACATCAACATCAAC 1 262775 ( 458) TTACCCATCATCAACATCATC 1 25746 ( 360) ACAACAAGCCACAACACCAAG 1 23210 ( 421) TCCTCCCTCCTCGACCACCAC 1 37881 ( 3) AACACCACCACCAACCTCCTC 1 3919 ( 303) ACATCAGTCACCACCACCACC 1 31465 ( 327) ACACAACACAACGCCTCCCTC 1 262862 ( 447) ACACCAGACCACACGTCCATC 1 21781 ( 235) CTCACCCGCCGCAACCACCTC 1 bd1807 ( 457) CAATCAACCATCAACCTCCTC 1 21725 ( 16) TCCCGCATCACCGACACCAAC 1 21110 ( 28) TCTTGCAACAACGCCTCCCTC 1 39003 ( 472) ATCTCAATCAGCACCAACAAG 1 25582 ( 184) ACATCCCATATCATCCACCAC 1 34735 ( 475) ACCACACGCAACACACCACAC 1 268003 ( 473) CCGACCACCCTCAACTTCACC 1 25124 ( 421) TGCACCAACATCACTCTCCTC 1 31710 ( 413) CCTTCCCACCACAGCCACCCG 1 28755 ( 334) ACCACCCCTCGAACCCTCCTC 1 22099 ( 148) TGTACACACCTCAGAATCATC 1 14597 ( 128) ACAACCCGCAGAACACACAGC 1 10608 ( 254) ACATCCCCCCTAAAATTCAGC 1 34959 ( 479) TCATCAAACAATAAAATCATA 1 35682 ( 345) CAAAGCAACAGCAACCAAAAC 1 22841 ( 432) AACTCAAACAGCACCTCCTCC 1 32414 ( 31) AGTCCAAACAGCAAACAAACC 1 35041 ( 382) ACGCCCCCCCCCCTCTCCCTC 1 22999 ( 248) ACTTGCAACCGCTCTCTCATC 1 25034 ( 478) TTTCACAACCACACCACAAAC 1 23847 ( 394) ACTCTCCTCATAGCCTTCCTC 1 18198 ( 463) CCACCACTCCATCCAAACAAG 1 34826 ( 289) TCCTTCCAACACAACCCCTTC 1 21363 ( 453) TCTCGCCACCAACCACTCAAG 1 5237 ( 36) ATACCACACCCTGAGATCAAC 1 5421 ( 478) TCTCCCCTCCCTCATATCCAC 1 25448 ( 220) TCTATCCTCATCACCAAGATG 1 6842 ( 390) CCATCCATCCGTCCATCCAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 24960 bayes= 9.4843 E= 9.3e-028 106 -45 -1217 10 -126 155 -147 -127 74 25 -246 -14 33 55 -1217 31 -258 160 -66 -159 67 131 -1217 -1217 59 125 -246 -1217 106 -64 -147 -27 -258 195 -1217 -259 94 108 -1217 -1217 42 -45 -14 -1 -126 172 -1217 -127 142 -64 -88 -359 81 95 -246 -259 -26 151 -246 -201 59 72 -1217 -27 33 46 -1217 40 -158 187 -246 -1217 133 36 -1217 -259 59 -86 -246 73 -199 176 -88 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 46 E= 9.3e-028 0.543478 0.173913 0.000000 0.282609 0.108696 0.695652 0.086957 0.108696 0.434783 0.282609 0.043478 0.239130 0.326087 0.347826 0.000000 0.326087 0.043478 0.717391 0.152174 0.086957 0.413043 0.586957 0.000000 0.000000 0.391304 0.565217 0.043478 0.000000 0.543478 0.152174 0.086957 0.217391 0.043478 0.913043 0.000000 0.043478 0.500000 0.500000 0.000000 0.000000 0.347826 0.173913 0.217391 0.260870 0.108696 0.782609 0.000000 0.108696 0.695652 0.152174 0.130435 0.021739 0.456522 0.456522 0.043478 0.043478 0.217391 0.673913 0.043478 0.065217 0.391304 0.391304 0.000000 0.217391 0.326087 0.326087 0.000000 0.347826 0.086957 0.869565 0.043478 0.000000 0.652174 0.304348 0.000000 0.043478 0.391304 0.130435 0.043478 0.434783 0.065217 0.804348 0.130435 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [AT]C[ACT][CAT]C[CA][CA][AT]C[AC][ATG]CA[AC][CA][ACT][TAC]C[AC][TA]C -------------------------------------------------------------------------------- Time 21.38 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 20 sites = 44 llr = 448 E-value = 1.9e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 3:::23:521:73131232: pos.-specific C :1::1::11::::1:11:1: probability G 34:a4:93269155365168 matrix T 45a:3711431223422512 bits 2.1 1.9 ** 1.7 ** * 1.5 ** * * Relative 1.2 ** * * Entropy 1.0 ** * * * (14.7 bits) 0.8 ** ** ** * 0.6 *** ** *** * * 0.4 **** ** **** ** *** 0.2 ******************** 0.0 -------------------- Multilevel TTTGGTGATGGAGGTGGTGG consensus AG TA GAT ATGTAA T sequence G A G T A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 37881 147 3.70e-08 TAAAGTCTGC ATTGGTGGCAGAGGTGGTGG CAGAAGTAGG 5237 153 6.22e-08 TGTAGCTGTT TTTGGTGATGGAGGGTATCG ATGGGTAGGC 262775 164 8.68e-08 TTACTTCATC ATTGGAGATTGAGGTGGTCG GTGAGCCGAT 36406 47 1.64e-07 TATGTCGTCC ATTGTTGATTGAGGGTTAGG GTCGGGGTTA 21110 153 1.64e-07 ACGCCAGGTC TTTGGCGGAGGAGTTGGTGG AGAGTGCTCC 34735 380 2.57e-07 GCGTGTTGCT TGTGGTGACTGAAGAGGGGG CCTGTGACAC 20731 276 2.57e-07 TCTGGAGAGG GTTGGTGATAGAGGAAGTGG TGAGATGTCT 24904 103 3.43e-07 CGATGACTGT ATTGATGAAGGAACTGTTGG CTGATCTATG bd524 195 4.54e-07 TTCTACTAGT AGTGGTGATGGAAGTGAAAT GAGGTGCTTT 23847 350 4.54e-07 GTCTCGGGCG TTTGGTGTTGGTAGATGTGG TTCCGTCGGC 6842 272 1.65e-06 TTGTCGTGTA TTTGCAGGAGGAGGACGTGG ACGGCACGGA 5906 94 1.65e-06 TGGAATGAGG ATTGATTAGGGAAGGGATGG TTTCCGGGCA 39003 201 2.09e-06 GCTTCCCTCG TGTGCTGACGTAGGGGGGGG GATGGTCACT 22462 425 2.09e-06 TGGCAAGCAA GTTGTTGTTGGGTTGGGAGG TTTGGAAGGG 37374 290 2.34e-06 GCGATTGTGG TCTGTAGCTTGATTGGGTGG AATACGAGAT 35682 221 2.34e-06 TCTCGTAGCG TGTGGCGAGAGAGTTGATGG GTCGCGACGA 28755 235 2.34e-06 TGGCTCATTG TGTGGTGGTGGAATTCATCG TGGAGGTGGT 262862 377 2.62e-06 GGTATCGTGA TCTGTTGCCTGAGGAGTAGG ACGGTGACTT 25034 93 2.62e-06 GCTTATCTGA GTTGTTGAGTGGGGAGGAGT AGGACTGCTC 3919 243 2.94e-06 TGCGGTCGTG TTTGTTGAATGAAGTTGATG ATACTACTTA 261885 4 2.94e-06 AAG AGTGGTGGAGGTGATTGAGG TGTGTGGAAG 23210 327 4.54e-06 GTGGTTTAAA AGTGATGATGGTGGTGATGA CGGGAAACAC 25746 65 6.20e-06 ATCTTTTCGA TTTGGAGAGAGAAGGATTGG CCTGGCCAGA 10608 27 7.58e-06 CCCAATTGAG AGTGGTGAAGGAGAGGAATT ATTGTTCACG 25582 355 1.01e-05 ACCTGTGATT GTTGGTGCGTGACGGGGTGT GGGATGGGGA 28300 29 1.12e-05 CTCATGGCGA TGTGGAGGTGTTGTGGTTAG GAAGGCGTGT bd1807 4 1.22e-05 ATC TTTGAAGATGGAAAATGACG GAGGGGAGGA 25124 72 1.22e-05 GTCATGTAAG GGTGCTGATTGATTTTTTAG CAGCAAATGC 32414 72 1.47e-05 AATGCACGAT ATTGGAGCGGGAGTTGACGT TCTCGCGGCA 22999 177 1.47e-05 AGTCTACGTG GCTGTTGCTGTTGGAGGTGT CGCGTCTCAA 31465 146 1.61e-05 GGATGACATG GTTGTTGAGGGGTAAGTTGT TGTAGGTTTC 22099 170 2.28e-05 AGAATCATCG TCTGATGGAGTTTGAGATGG ATCAGTAGAT 25448 161 2.48e-05 CGTTTGCTCC AGTGTTGGAGGTGTTCTTTG AGAAAGGAGT 21363 338 2.69e-05 AGATCGATCT TGTGAAGGTGTAGTAGCAAG AGTTGTGCTG 30871 74 3.71e-05 TATCATCGTT GCTGATGATGGATCGGGGAT GAGAGTTGCT 22841 206 4.01e-05 TTTTTATTAG ACTGTTTGCGGAGTAGAGGG TGTGACTTTT 21725 216 4.01e-05 CATTCACTGC GTTGAAGTAGGAATTAGTAG ACTTTTCTAC 5421 154 4.67e-05 ACAAATTGCA ATTGAAGATGGAAAAGTGAT TGTCGCGGTG 23737 348 4.67e-05 AGCTTGGAAA GGTGGAGGGTGGTTGGCAGG ACGGCGGTGT 34826 159 5.41e-05 GCAAAGCTTT TTTGTTGTTGGGTCTTCAGG TTGCCTTCGC 14597 207 7.71e-05 GCGACGTCTT GGTGGTTTCTGAGCTGCTGG CGGCGAGTAC bd381 389 8.26e-05 GGCACGTGAC TGTGTTGAAAGATGGTTCTG TCGGTCGCAC 40509 243 8.83e-05 AAGAGAGCAT ATTGCTGCTGTTGTTCGTCG CTGTTGTTGG 34959 259 1.01e-04 GGTGGTATGT TGTATTGAGAGAAGGGGAAT GAGTTGCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 37881 3.7e-08 146_[+2]_334 5237 6.2e-08 152_[+2]_328 262775 8.7e-08 163_[+2]_317 36406 1.6e-07 46_[+2]_434 21110 1.6e-07 152_[+2]_328 34735 2.6e-07 379_[+2]_101 20731 2.6e-07 275_[+2]_205 24904 3.4e-07 102_[+2]_378 bd524 4.5e-07 194_[+2]_286 23847 4.5e-07 349_[+2]_131 6842 1.6e-06 271_[+2]_209 5906 1.6e-06 93_[+2]_387 39003 2.1e-06 200_[+2]_280 22462 2.1e-06 424_[+2]_56 37374 2.3e-06 289_[+2]_191 35682 2.3e-06 220_[+2]_260 28755 2.3e-06 234_[+2]_246 262862 2.6e-06 376_[+2]_104 25034 2.6e-06 92_[+2]_388 3919 2.9e-06 242_[+2]_238 261885 2.9e-06 3_[+2]_477 23210 4.5e-06 326_[+2]_154 25746 6.2e-06 64_[+2]_416 10608 7.6e-06 26_[+2]_454 25582 1e-05 354_[+2]_126 28300 1.1e-05 28_[+2]_452 bd1807 1.2e-05 3_[+2]_477 25124 1.2e-05 71_[+2]_409 32414 1.5e-05 71_[+2]_409 22999 1.5e-05 176_[+2]_304 31465 1.6e-05 145_[+2]_335 22099 2.3e-05 169_[+2]_311 25448 2.5e-05 160_[+2]_320 21363 2.7e-05 337_[+2]_143 30871 3.7e-05 73_[+2]_407 22841 4e-05 205_[+2]_275 21725 4e-05 215_[+2]_265 5421 4.7e-05 153_[+2]_327 23737 4.7e-05 347_[+2]_133 34826 5.4e-05 158_[+2]_322 14597 7.7e-05 206_[+2]_274 bd381 8.3e-05 388_[+2]_92 40509 8.8e-05 242_[+2]_238 34959 0.0001 258_[+2]_222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=20 seqs=44 37881 ( 147) ATTGGTGGCAGAGGTGGTGG 1 5237 ( 153) TTTGGTGATGGAGGGTATCG 1 262775 ( 164) ATTGGAGATTGAGGTGGTCG 1 36406 ( 47) ATTGTTGATTGAGGGTTAGG 1 21110 ( 153) TTTGGCGGAGGAGTTGGTGG 1 34735 ( 380) TGTGGTGACTGAAGAGGGGG 1 20731 ( 276) GTTGGTGATAGAGGAAGTGG 1 24904 ( 103) ATTGATGAAGGAACTGTTGG 1 bd524 ( 195) AGTGGTGATGGAAGTGAAAT 1 23847 ( 350) TTTGGTGTTGGTAGATGTGG 1 6842 ( 272) TTTGCAGGAGGAGGACGTGG 1 5906 ( 94) ATTGATTAGGGAAGGGATGG 1 39003 ( 201) TGTGCTGACGTAGGGGGGGG 1 22462 ( 425) GTTGTTGTTGGGTTGGGAGG 1 37374 ( 290) TCTGTAGCTTGATTGGGTGG 1 35682 ( 221) TGTGGCGAGAGAGTTGATGG 1 28755 ( 235) TGTGGTGGTGGAATTCATCG 1 262862 ( 377) TCTGTTGCCTGAGGAGTAGG 1 25034 ( 93) GTTGTTGAGTGGGGAGGAGT 1 3919 ( 243) TTTGTTGAATGAAGTTGATG 1 261885 ( 4) AGTGGTGGAGGTGATTGAGG 1 23210 ( 327) AGTGATGATGGTGGTGATGA 1 25746 ( 65) TTTGGAGAGAGAAGGATTGG 1 10608 ( 27) AGTGGTGAAGGAGAGGAATT 1 25582 ( 355) GTTGGTGCGTGACGGGGTGT 1 28300 ( 29) TGTGGAGGTGTTGTGGTTAG 1 bd1807 ( 4) TTTGAAGATGGAAAATGACG 1 25124 ( 72) GGTGCTGATTGATTTTTTAG 1 32414 ( 72) ATTGGAGCGGGAGTTGACGT 1 22999 ( 177) GCTGTTGCTGTTGGAGGTGT 1 31465 ( 146) GTTGTTGAGGGGTAAGTTGT 1 22099 ( 170) TCTGATGGAGTTTGAGATGG 1 25448 ( 161) AGTGTTGGAGGTGTTCTTTG 1 21363 ( 338) TGTGAAGGTGTAGTAGCAAG 1 30871 ( 74) GCTGATGATGGATCGGGGAT 1 22841 ( 206) ACTGTTTGCGGAGTAGAGGG 1 21725 ( 216) GTTGAAGTAGGAATTAGTAG 1 5421 ( 154) ATTGAAGATGGAAAAGTGAT 1 23737 ( 348) GGTGGAGGGTGGTTGGCAGG 1 34826 ( 159) TTTGTTGTTGGGTCTTCAGG 1 14597 ( 207) GGTGGTTTCTGAGCTGCTGG 1 bd381 ( 389) TGTGTTGAAAGATGGTTCTG 1 40509 ( 243) ATTGCTGCTGTTGTTCGTCG 1 34959 ( 259) TGTATTGAGAGAAGGGGAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 25012 bayes= 9.50401 E= 1.9e-021 29 -1210 6 72 -1210 -80 60 93 -1210 -1210 -1210 193 -351 -1210 202 -1210 -35 -138 77 17 -6 -238 -1210 142 -1210 -1210 196 -195 94 -80 6 -121 -19 -80 -23 72 -93 -1210 135 -7 -1210 -1210 185 -95 144 -1210 -108 -53 7 -338 106 -36 -119 -138 99 28 18 -1210 41 56 -193 -138 141 -36 -19 -138 92 -21 18 -238 -108 105 -52 -106 135 -153 -351 -1210 164 -21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 44 E= 1.9e-021 0.318182 0.000000 0.250000 0.431818 0.000000 0.136364 0.363636 0.500000 0.000000 0.000000 0.000000 1.000000 0.022727 0.000000 0.977273 0.000000 0.204545 0.090909 0.409091 0.295455 0.250000 0.045455 0.000000 0.704545 0.000000 0.000000 0.931818 0.068182 0.500000 0.136364 0.250000 0.113636 0.227273 0.136364 0.204545 0.431818 0.136364 0.000000 0.613636 0.250000 0.000000 0.000000 0.863636 0.136364 0.704545 0.000000 0.113636 0.181818 0.272727 0.022727 0.500000 0.204545 0.113636 0.090909 0.477273 0.318182 0.295455 0.000000 0.318182 0.386364 0.068182 0.090909 0.636364 0.204545 0.227273 0.090909 0.454545 0.227273 0.295455 0.045455 0.113636 0.545455 0.181818 0.113636 0.613636 0.090909 0.022727 0.000000 0.750000 0.227273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [TAG][TG]TG[GTA][TA]G[AG][TAG][GT]GA[GAT][GT][TGA][GT][GAT][TA]G[GT] -------------------------------------------------------------------------------- Time 41.65 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 40 llr = 383 E-value = 4.6e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 3425:151:5::5325113:1 pos.-specific C 14:2311::12::4322112: probability G 5:825912811a:231563:9 matrix T 13123:47247:52233248: bits 2.1 1.9 * 1.7 * * 1.5 * * Relative 1.2 * * * * Entropy 1.0 * * * * ** (13.8 bits) 0.8 * * ** *** ** 0.6 * * ** *** ** 0.4 *** ** ** *** * ** 0.2 ************* ****** 0.0 --------------------- Multilevel GCGAGGATGATGTCGAGGTTG consensus AA CC T T AACTT AC sequence T T GAC G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 39003 167 4.70e-10 AGGTATTGAA GAGACGTTGATGAAGAGGTTG CGTGCTTCCC 10608 133 1.68e-08 CACAACGACC ACGATGATGATGATGATGATG TCGCCATTCC 25746 200 3.57e-08 GGGGCGGTGG GCGTTGTTGATGACGACGATG CAGTGACGGT 24904 213 1.62e-07 TCAACGCCGT ACGATGATGTTGTGGGTGGTG CCTGATGTGC bd524 295 4.54e-07 GCGGGAATTC AAGATGATGTCGTCACTGTTG TTTCTACTCG 31710 9 1.15e-06 TATGTATG GAAAGGATGGTGAGAAGTTTG GAGTATCGAC 5237 381 1.30e-06 CTAACCAAGG CAGAGGATGTTGTGAAGAGTG ATCGGTGATG 37881 425 1.30e-06 GTGATGGCAG TCGATGATGATGTCTTCGTCG TCGTCGTCGT 22999 386 2.38e-06 TGACATTGGT GCGACGGTGATGTGACGTCTG ATGTCTGAGA 262775 205 2.68e-06 GAACAGAAGA GAGACGAAGATGGCGATGGTG GGTTGGAGGA 3919 46 3.00e-06 TCAGGAGGAG GAGCCGAGGACGATATGGGTG ACTTTGGAGA 23210 292 3.00e-06 GAGATGCGAC GAGAGAGTGAGGTCCTGGTTG GTTGGTGGTT 37374 326 3.36e-06 AGATACTGGC GTGAGATGGTTGACGTTGATG GGGTTATCTC 34826 57 3.76e-06 ACCTAGAACC ACAACGTTTACGTCAAGGTTG TCATTGCGCA 28755 36 3.76e-06 CCTTCCACGT CCGGTGATGTTGAACTTGGTG CCGATCTCGA 22841 89 3.76e-06 TCATCGTCTG ATGAGGAGGATGAGTGGATTG AGGAGTCGTC bd196 235 4.20e-06 ATCGTATGGT GCACGGTTGATGATCAGGATA GTAGGGCTTT bd1807 398 5.81e-06 TATTTGGGAT GAGCGGGTTATGAGCCTGGCG GGAAAATTGC 21781 10 7.16e-06 ATCCAAAGT ATAAGGATGCTGTGGAAGATG TACTTGCAAA 30871 478 7.93e-06 CACAGCTGGA GAGTTCTTGATGTCACCGTTG CT 34221 34 1.30e-05 GCACAATGAA GTGCGGAGTCTGTCGAGATTG CAGTTCTTGT 31465 56 1.43e-05 GGTGCGGCCG ACGACGCTGACGATCAGGCCG ATGTATTGGC 20731 224 1.73e-05 GAATAAAAAC AAGAGGATGGCGTATCTCGTG TGCATCATAG 18198 376 2.72e-05 TATGACAGCA GCGACGGAGACGAAGAGAACG AAGAGCTCGA 34959 391 2.97e-05 TGCGGCTTGA ATGAGGCTTTTGACGACTCTG CTGATTTCTA 14597 26 2.97e-05 CCCTTTCGTC GAGAGGTTGGTGTAGGCGACA GGAACGGCGT 22462 207 3.53e-05 TTTTCGATAC GCATGGTAGTTGATTATTGTG ATGTATTGTG 25448 400 3.84e-05 TACTAGCAAA GCGGGTCTGATGTTCAGGACG GACAAATAAC 21725 181 4.54e-05 CAGTGACAAT TTGCGGTTGTGGACAAAGACG GGATCATTCA 36406 107 5.80e-05 TTCGCGTGGA TCGTTGTTGTTGTCTCACTTG GAAAAATTTG 21110 118 5.80e-05 TTGATGACCC TTGCGGAATTTGAGTTTGGTG TGAGACGCCA 34735 350 6.79e-05 AAAGTGGGTG GAGGGAGGGTGGAGGTGGGTG CGTGTTGCTT 23737 426 6.79e-05 CCATACTTTG AATTCGTTTTTGTCCCCGTTG TTTATTCTTC 21363 280 6.79e-05 CTGACCGCAG GCGCCCATGAGGAACACCTTG GTGGGTGCAT 5906 121 8.55e-05 TGGTTTCCGG GCACCGAGGGTGTAGAGGGAG ATAAGAATAA 35041 197 8.55e-05 TAGAGTCGCT AAGTTGATCATGTATTTATTG TGCTACATGC 25582 378 9.23e-05 GGGGTGTGGG ATGGGGATGTTGTACGGTACA CCGAGCGTAG 5421 386 1.33e-04 TTCAAAGGGG ACAGCGTTTAGGTAACGTTTG TCTTCTTTCA 22099 289 2.01e-04 GTGTTGCAAC GTTGTGTTGTCGTTTTGTATG GTAGTGTTGG 6842 247 2.15e-04 GCACTGGTCG GTGTGGTGGCTCACCTTGTCG TGTATTTGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 39003 4.7e-10 166_[+3]_313 10608 1.7e-08 132_[+3]_347 25746 3.6e-08 199_[+3]_280 24904 1.6e-07 212_[+3]_267 bd524 4.5e-07 294_[+3]_185 31710 1.1e-06 8_[+3]_471 5237 1.3e-06 380_[+3]_99 37881 1.3e-06 424_[+3]_55 22999 2.4e-06 385_[+3]_94 262775 2.7e-06 204_[+3]_275 3919 3e-06 45_[+3]_434 23210 3e-06 291_[+3]_188 37374 3.4e-06 325_[+3]_154 34826 3.8e-06 56_[+3]_423 28755 3.8e-06 35_[+3]_444 22841 3.8e-06 88_[+3]_391 bd196 4.2e-06 234_[+3]_245 bd1807 5.8e-06 397_[+3]_82 21781 7.2e-06 9_[+3]_470 30871 7.9e-06 477_[+3]_2 34221 1.3e-05 33_[+3]_446 31465 1.4e-05 55_[+3]_424 20731 1.7e-05 223_[+3]_256 18198 2.7e-05 375_[+3]_104 34959 3e-05 390_[+3]_89 14597 3e-05 25_[+3]_454 22462 3.5e-05 206_[+3]_273 25448 3.8e-05 399_[+3]_80 21725 4.5e-05 180_[+3]_299 36406 5.8e-05 106_[+3]_373 21110 5.8e-05 117_[+3]_362 34735 6.8e-05 349_[+3]_130 23737 6.8e-05 425_[+3]_54 21363 6.8e-05 279_[+3]_200 5906 8.6e-05 120_[+3]_359 35041 8.6e-05 196_[+3]_283 25582 9.2e-05 377_[+3]_102 5421 0.00013 385_[+3]_94 22099 0.0002 288_[+3]_191 6842 0.00021 246_[+3]_233 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=40 39003 ( 167) GAGACGTTGATGAAGAGGTTG 1 10608 ( 133) ACGATGATGATGATGATGATG 1 25746 ( 200) GCGTTGTTGATGACGACGATG 1 24904 ( 213) ACGATGATGTTGTGGGTGGTG 1 bd524 ( 295) AAGATGATGTCGTCACTGTTG 1 31710 ( 9) GAAAGGATGGTGAGAAGTTTG 1 5237 ( 381) CAGAGGATGTTGTGAAGAGTG 1 37881 ( 425) TCGATGATGATGTCTTCGTCG 1 22999 ( 386) GCGACGGTGATGTGACGTCTG 1 262775 ( 205) GAGACGAAGATGGCGATGGTG 1 3919 ( 46) GAGCCGAGGACGATATGGGTG 1 23210 ( 292) GAGAGAGTGAGGTCCTGGTTG 1 37374 ( 326) GTGAGATGGTTGACGTTGATG 1 34826 ( 57) ACAACGTTTACGTCAAGGTTG 1 28755 ( 36) CCGGTGATGTTGAACTTGGTG 1 22841 ( 89) ATGAGGAGGATGAGTGGATTG 1 bd196 ( 235) GCACGGTTGATGATCAGGATA 1 bd1807 ( 398) GAGCGGGTTATGAGCCTGGCG 1 21781 ( 10) ATAAGGATGCTGTGGAAGATG 1 30871 ( 478) GAGTTCTTGATGTCACCGTTG 1 34221 ( 34) GTGCGGAGTCTGTCGAGATTG 1 31465 ( 56) ACGACGCTGACGATCAGGCCG 1 20731 ( 224) AAGAGGATGGCGTATCTCGTG 1 18198 ( 376) GCGACGGAGACGAAGAGAACG 1 34959 ( 391) ATGAGGCTTTTGACGACTCTG 1 14597 ( 26) GAGAGGTTGGTGTAGGCGACA 1 22462 ( 207) GCATGGTAGTTGATTATTGTG 1 25448 ( 400) GCGGGTCTGATGTTCAGGACG 1 21725 ( 181) TTGCGGTTGTGGACAAAGACG 1 36406 ( 107) TCGTTGTTGTTGTCTCACTTG 1 21110 ( 118) TTGCGGAATTTGAGTTTGGTG 1 34735 ( 350) GAGGGAGGGTGGAGGTGGGTG 1 23737 ( 426) AATTCGTTTTTGTCCCCGTTG 1 21363 ( 280) GCGCCCATGAGGAACACCTTG 1 5906 ( 121) GCACCGAGGGTGTAGAGGGAG 1 35041 ( 197) AAGTTGATCATGTATTTATTG 1 25582 ( 378) ATGGGGATGTTGTACGGTACA 1 5421 ( 386) ACAGCGTTTAGGTAACGTTTG 1 22099 ( 289) GTTGTGTTGTCGTTTTGTATG 1 6842 ( 247) GTGTGGTGGCTCACCTTGTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 24960 bayes= 9.535 E= 4.6e-002 32 -224 113 -139 43 75 -1197 -7 -57 -1197 169 -239 87 -25 -68 -59 -1197 21 98 -7 -179 -224 182 -339 79 -166 -94 41 -138 -1197 -46 146 -1197 -324 174 -59 87 -166 -126 41 -1197 -44 -94 141 -1197 -324 202 -1197 87 -1197 -326 93 -6 56 -9 -59 -21 8 44 -39 79 -25 -126 -7 -179 -44 91 19 -106 -166 138 -59 8 -166 20 51 -338 -8 -1197 151 -179 -1197 195 -1197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 40 E= 4.6e-002 0.325000 0.050000 0.525000 0.100000 0.350000 0.400000 0.000000 0.250000 0.175000 0.000000 0.775000 0.050000 0.475000 0.200000 0.150000 0.175000 0.000000 0.275000 0.475000 0.250000 0.075000 0.050000 0.850000 0.025000 0.450000 0.075000 0.125000 0.350000 0.100000 0.000000 0.175000 0.725000 0.000000 0.025000 0.800000 0.175000 0.475000 0.075000 0.100000 0.350000 0.000000 0.175000 0.125000 0.700000 0.000000 0.025000 0.975000 0.000000 0.475000 0.000000 0.025000 0.500000 0.250000 0.350000 0.225000 0.175000 0.225000 0.250000 0.325000 0.200000 0.450000 0.200000 0.100000 0.250000 0.075000 0.175000 0.450000 0.300000 0.125000 0.075000 0.625000 0.175000 0.275000 0.075000 0.275000 0.375000 0.025000 0.225000 0.000000 0.750000 0.075000 0.000000 0.925000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [GA][CAT]G[AC][GCT]G[AT]TG[AT]TG[TA][CAG][GCAT][ATC][GT]G[TAG][TC]G -------------------------------------------------------------------------------- Time 63.60 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10608 4.43e-08 26_[+2(7.58e-06)]_86_[+3(1.68e-08)]_\ 100_[+1(1.13e-05)]_226 14597 2.47e-04 25_[+3(2.97e-05)]_81_[+1(1.03e-05)]_\ 58_[+2(7.71e-05)]_274 18198 5.79e-03 375_[+3(2.72e-05)]_66_\ [+1(3.38e-05)]_17 20731 3.17e-08 223_[+3(1.73e-05)]_31_\ [+2(2.57e-07)]_146_[+1(2.25e-07)]_38 21110 6.48e-07 27_[+1(2.94e-06)]_69_[+3(5.80e-05)]_\ 14_[+2(1.64e-07)]_328 21363 6.79e-04 279_[+3(6.79e-05)]_37_\ [+2(2.69e-05)]_95_[+1(4.28e-05)]_27 21553 1.61e-03 73_[+1(1.72e-07)]_406 21725 6.88e-05 15_[+1(2.94e-06)]_2_[+1(1.75e-05)]_\ 121_[+3(4.54e-05)]_14_[+2(4.01e-05)]_265 21781 2.24e-04 9_[+3(7.16e-06)]_136_[+1(8.30e-05)]_\ 47_[+1(2.39e-06)]_245 22099 4.36e-04 147_[+1(1.03e-05)]_1_[+2(2.28e-05)]_\ 101_[+2(7.20e-05)]_190 22462 7.90e-04 206_[+3(3.53e-05)]_14_\ [+2(2.48e-05)]_127_[+2(3.43e-05)]_16_[+2(2.09e-06)]_56 22841 3.47e-05 88_[+3(3.76e-06)]_96_[+2(4.01e-05)]_\ 206_[+1(1.61e-05)]_48 22999 1.73e-05 176_[+2(1.47e-05)]_51_\ [+1(3.13e-05)]_117_[+3(2.38e-06)]_94 23210 1.59e-07 291_[+3(3.00e-06)]_14_\ [+2(4.54e-06)]_74_[+1(4.28e-07)]_59 23737 1.80e-02 347_[+2(4.67e-05)]_58_\ [+3(6.79e-05)]_54 23847 2.07e-04 349_[+2(4.54e-07)]_24_\ [+1(3.38e-05)]_86 24904 1.38e-06 102_[+2(3.43e-07)]_90_\ [+3(1.62e-07)]_267 25034 6.64e-04 92_[+2(2.62e-06)]_365_\ [+1(3.38e-05)]_2 25124 1.11e-03 71_[+2(1.22e-05)]_277_\ [+1(7.20e-05)]_31_[+1(5.36e-06)]_59 25448 5.06e-04 160_[+2(2.48e-05)]_39_\ [+1(5.78e-05)]_159_[+3(3.84e-05)]_80 25582 5.46e-05 183_[+1(4.41e-06)]_15_\ [+1(9.55e-05)]_114_[+2(1.01e-05)]_3_[+3(9.23e-05)]_102 25746 3.63e-09 40_[+2(5.82e-05)]_4_[+2(6.20e-06)]_\ 115_[+3(3.57e-08)]_139_[+1(4.28e-07)]_120 261885 4.98e-06 3_[+2(2.94e-06)]_11_[+1(5.37e-05)]_\ 347_[+1(2.93e-07)]_77 262775 3.01e-09 163_[+2(8.68e-08)]_21_\ [+3(2.68e-06)]_104_[+1(7.73e-05)]_107_[+1(3.33e-07)]_22 262862 7.55e-05 376_[+2(2.62e-06)]_50_\ [+1(2.39e-06)]_33 268003 1.44e-02 472_[+1(5.36e-06)]_7 28300 5.06e-06 28_[+2(1.12e-05)]_396_\ [+1(4.67e-08)]_35 28755 1.90e-06 35_[+3(3.76e-06)]_178_\ [+2(2.34e-06)]_79_[+1(1.03e-05)]_24_[+1(7.20e-05)]_101 30871 2.91e-03 73_[+2(3.71e-05)]_384_\ [+3(7.93e-06)]_2 31465 9.42e-06 55_[+3(1.43e-05)]_69_[+2(1.61e-05)]_\ 20_[+3(8.55e-05)]_120_[+1(2.39e-06)]_153 31710 1.32e-04 8_[+3(1.15e-06)]_383_[+1(1.03e-05)]_\ 21_[+1(4.98e-05)]_25 32414 1.26e-04 30_[+1(2.45e-05)]_20_[+2(1.47e-05)]_\ 409 34221 1.14e-07 33_[+3(1.30e-05)]_425_\ [+1(3.65e-10)] 34735 1.76e-06 349_[+3(6.79e-05)]_9_[+2(2.57e-07)]_\ 75_[+1(4.86e-06)]_5 34826 9.80e-05 56_[+3(3.76e-06)]_81_[+2(5.41e-05)]_\ 110_[+1(3.96e-05)]_191 34959 3.60e-04 390_[+3(2.97e-05)]_67_\ [+1(1.24e-05)]_1 35041 1.49e-02 196_[+3(8.55e-05)]_164_\ [+1(3.13e-05)]_98 35682 3.67e-04 220_[+2(2.34e-06)]_104_\ [+1(1.48e-05)]_135 36406 5.18e-09 46_[+2(1.64e-07)]_40_[+3(5.80e-05)]_\ 352_[+1(1.49e-08)] 37374 1.79e-04 289_[+2(2.34e-06)]_16_\ [+3(3.36e-06)]_154 37881 1.73e-09 2_[+1(8.81e-07)]_123_[+2(3.70e-08)]_\ 258_[+3(1.30e-06)]_55 39003 1.88e-10 166_[+3(4.70e-10)]_13_\ [+2(2.09e-06)]_251_[+1(3.99e-06)]_8 3919 3.45e-07 45_[+3(3.00e-06)]_176_\ [+2(2.94e-06)]_40_[+1(1.55e-06)]_177 40509 3.30e-04 242_[+2(8.83e-05)]_135_\ [+1(2.57e-07)]_82 5237 1.05e-07 35_[+1(4.62e-05)]_96_[+2(6.22e-08)]_\ 208_[+3(1.30e-06)]_3_[+2(3.16e-05)]_76 5421 2.10e-03 153_[+2(4.67e-05)]_304_\ [+1(4.98e-05)]_2 5906 1.03e-06 45_[+2(3.16e-05)]_28_[+2(1.65e-06)]_\ 7_[+3(8.55e-05)]_165_[+1(7.73e-05)]_132_[+1(3.33e-07)]_20 6842 4.74e-04 271_[+2(1.65e-06)]_209 bd1807 3.64e-06 3_[+2(1.22e-05)]_78_[+2(6.25e-05)]_\ 276_[+3(5.81e-06)]_38_[+1(2.65e-06)]_23 bd196 2.19e-05 234_[+3(4.20e-06)]_130_\ [+1(5.36e-06)]_9_[+1(1.72e-07)]_64 bd381 2.32e-05 114_[+1(3.41e-08)]_47_\ [+1(5.37e-05)]_185_[+2(8.26e-05)]_92 bd524 7.14e-06 90_[+3(1.58e-05)]_83_[+2(4.54e-07)]_\ 80_[+3(4.54e-07)]_36_[+3(1.58e-05)]_128 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************