******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/230/230.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 11147 1.0000 500 11508 1.0000 500 12259 1.0000 500 12821 1.0000 500 12971 1.0000 500 12982 1.0000 500 1357 1.0000 500 1374 1.0000 500 14890 1.0000 500 16287 1.0000 500 17492 1.0000 500 19301 1.0000 500 20734 1.0000 500 20960 1.0000 500 2128 1.0000 500 21422 1.0000 500 21462 1.0000 500 2157 1.0000 500 21698 1.0000 500 21802 1.0000 500 21959 1.0000 500 22356 1.0000 500 22417 1.0000 500 22441 1.0000 500 22482 1.0000 500 22499 1.0000 500 22847 1.0000 500 22965 1.0000 500 23061 1.0000 500 23105 1.0000 500 23336 1.0000 500 23490 1.0000 500 23513 1.0000 500 23812 1.0000 500 24015 1.0000 500 24314 1.0000 500 24323 1.0000 500 24332 1.0000 500 24429 1.0000 500 24439 1.0000 500 24445 1.0000 500 24907 1.0000 500 25120 1.0000 500 25365 1.0000 500 25436 1.0000 500 25604 1.0000 500 25689 1.0000 500 2569 1.0000 500 25725 1.0000 500 260748 1.0000 500 261145 1.0000 500 261746 1.0000 500 261910 1.0000 500 262018 1.0000 500 262325 1.0000 500 262731 1.0000 500 263046 1.0000 500 263350 1.0000 500 263644 1.0000 500 264090 1.0000 500 264632 1.0000 500 268327 1.0000 500 268412 1.0000 500 268455 1.0000 500 268746 1.0000 500 268812 1.0000 500 268880 1.0000 500 269034 1.0000 500 269080 1.0000 500 269917 1.0000 500 269925 1.0000 500 270120 1.0000 500 30980 1.0000 500 31516 1.0000 500 31819 1.0000 500 32158 1.0000 500 32273 1.0000 500 32395 1.0000 500 32744 1.0000 500 32882 1.0000 500 3315 1.0000 500 33476 1.0000 500 34021 1.0000 500 34176 1.0000 500 34596 1.0000 500 34782 1.0000 500 35194 1.0000 500 35297 1.0000 500 35584 1.0000 500 36597 1.0000 500 36845 1.0000 500 37705 1.0000 500 38073 1.0000 500 38136 1.0000 500 3858 1.0000 500 38662 1.0000 500 38757 1.0000 500 39812 1.0000 500 4038 1.0000 500 40884 1.0000 500 5236 1.0000 500 5666 1.0000 500 5794 1.0000 500 6012 1.0000 500 6265 1.0000 500 7838 1.0000 500 8541 1.0000 500 8559 1.0000 500 8995 1.0000 500 9017 1.0000 500 9118 1.0000 500 9576 1.0000 500 9608 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/230/230.seqs.fa -oc motifs/230 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 113 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56500 N= 113 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.267 C 0.233 G 0.238 T 0.261 Background letter frequencies (from dataset with add-one prior applied): A 0.267 C 0.233 G 0.238 T 0.261 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 94 llr = 895 E-value = 1.9e-055 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :64444272184346633444 pos.-specific C 8245358:59:4654254454 probability G :2::11::1:1::2:::22:1 matrix T 21113::32:111::2211:1 bits 2.1 1.9 1.7 1.5 * Relative 1.3 * * * Entropy 1.1 * * ** (13.7 bits) 0.8 * ** ** * * * 0.6 * ** *** ** * * * 0.4 **** *** ******** ** 0.2 ********************* 0.0 --------------------- Multilevel CAACACCACCACCCAACCCCA consensus T CACA TT AAACCAAAAC sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 38757 286 4.70e-10 CCCCTCCTTT CACCACCACCATCCAACCACC ACCTGATAAC 36597 286 4.70e-10 CCCCTCCTTT CACCACCACCATCCAACCACC ACCTGATAAC 263350 204 6.59e-08 CACTCAACTT CGCATCCACCACCCATCACAC ACATCTATCA 25604 475 6.59e-08 ACCGCTCAGC CACAGCCACCACACCACAACC AACCA 21802 451 6.59e-08 AGCCATCACT CAACACCAACAACCACAAACC ACAACCAACT 25365 444 9.45e-08 GTCCGAAAGG CACAAACAGCACAAAACCCCA CCATAAACTG 32395 191 1.13e-07 TAGCTCGAGT CACAACCTCCAACGAACAGAC GTCTCAACAA 6012 464 1.88e-07 TACCCCTCAC CACCACCACCAGCCACCGCCA ACACACAAAA 22499 388 3.56e-07 AATCACGGCC CTCATCCACCAACCAACATCC AACTCTCACG 24332 440 5.61e-07 ACCACAAATG CAACTACACCGCACCACACAC CACACCGAAC 38136 452 7.50e-07 ACTCCTCCGC CAAACCCATCAACGCCCCCCG TGAAGCGTCC 24323 468 9.95e-07 AACTGGTGCT CGAAAACAACAACCCCACACA TCCATCCATC 22417 478 9.95e-07 CACCAACCAT CAACCAAACCACACCAAGCAA CG 40884 300 1.14e-06 ACTTTTCAAA CGCACCCACCACCGACCACAG CGGCTGTCTG 25120 480 1.14e-06 CAGCAGTCAA CAAACCCACCATAGCAAAACA 1357 468 1.14e-06 CTCCCTCAAC CACAACCAACAACACCCAACT GAGTAATACA 7838 383 1.31e-06 AATCCACAAC CATCAACATCAACCATTCCAC TTCCATCCAT 31516 409 1.31e-06 ATACCAACGT CACACAAAACACCACATCACA ACTCACAGTA 264632 382 1.71e-06 ACGCCTACGA TACCCACTTCAACAAAACAAC GCAGCCCCGG 24314 123 1.71e-06 AGGCAAGAAG CAACACAACCACACAACGGAG GACGACGGCA 31819 480 1.95e-06 CTCAACGAAC CTACCACATCACACCAACACC 20734 382 2.22e-06 GACGTGTGAC TCACCCCAACAACCAACCACT TCTCTTCGTT 38662 341 2.52e-06 GCCGCCAGAA CACCAACACCACTACACTGAC CGATCATCCG 38073 446 2.52e-06 AACAACTAGC TAACTCCTCCACCACAAATCA CTCTCTTCAC 34021 479 2.52e-06 GATCACTCAT CACATCATCCATCACAACCAA C 23490 392 2.52e-06 TAACTCGAGA CGACAACAACAACAACAGCAA CAGCTCATTC 263644 416 2.85e-06 TACTCAACTT CCAAACCACAACCACACATCC TCTCTCTCCC 34782 435 3.23e-06 CCTTACACCG CCACCACTTCAACCAAGCCCA CTACTCTGAT 32882 284 3.65e-06 TCTCACCAAA CCCCAACTTCACCCCTTCACA ATACCCCTTA 39812 165 4.11e-06 AAGCCAGAAA CACCTCATCAAACAAAACCAA AAGAATGGGC 36845 425 4.11e-06 CCTCTGGCTA CACCACATCCATCAACACGCA TCAACCATCA 12971 398 4.11e-06 ACCGACGTGC CAACAACAGCCACCAACAACA CAAGAACAGC 33476 130 4.63e-06 CGAGCCATAG TGCATCCACCATCCCTCCGCC ACGTCGGCAT 23105 82 4.63e-06 TGTGTGGTGC CAACTCCAAAATCAAAAACAA GTACCGGGAA 8995 473 5.21e-06 CCAGTGCAGT CCTCCCCTCCAGCCAACACAC AGTCAGC 262018 480 5.21e-06 ACCCGATCCA CAAACACTCCTCCAACAACCA 23336 464 5.21e-06 GACGACCACC CGACTGCACCACCCCTAAACA ACTTCGTTGT 5794 458 5.85e-06 CATCATCGAC CACAACCACCAAAGAGCAGCA AGTTTCATCT 261746 438 5.85e-06 TCCTCACGTC CACACAATCCTCCAAACCGCC CGACGGCACC 260748 453 5.85e-06 CCTCTCTCCT CACCAACTTCACAACAAACAG AGGCGTTTCC 9576 175 6.55e-06 ATGACTCTCT CCACCACATCAACGATTCAAA CCATGATACT 32158 112 6.55e-06 GACGTAATAT CAACACCAACACAAAAGTCAA TACATGCACG 24907 396 7.34e-06 GATTTCTACA CAACTCCACCACCAGCAATCC TTCCGACACT 34596 355 8.20e-06 GGAGAGCGGA CAAACAAACAAACAAACTCAC GGTCTGTATG 22441 459 8.20e-06 TACCACCTCG CACTGCCACCACAACACGTAA TCACTCCAAC 268880 479 1.02e-05 CCTAACCCAT CACTCCCATCACCTCACACAC C 263046 386 1.02e-05 CTGCCTCACA CAAAACCAACAGTCAACCGAA CAACGAACGA 8559 459 1.14e-05 ATTGAACCAA TACCAACACAATCCCATCGCA AATACGAAAT 5236 287 1.14e-05 AATCACTATT CTTCTCCATCACCCATCACCG ATCACTCTTC 270120 55 1.26e-05 CGGCACTCAC CAAACACTCAATCAACACCAC CGCCACCACT 22965 438 1.26e-05 GAGTTGTACT CTCCTACATCACCACATTCAC CATCAGAAGA 269917 34 1.40e-05 GCTGCAGCAG CACAATCTACAACCAATGACA ACGGAAAGAG 12259 361 1.40e-05 ATCACCCTTC CACCAGATCCATCAATCCCCA TCTGCGAAAG 261145 312 1.56e-05 ATCATCATGT CGCATCCATCACTACCACAAC ATTACCAACA 22356 433 1.56e-05 AATACCGGTC TAATACCATCACCCCCTCTCC GGAGTGAGAC 14890 467 1.56e-05 AGTGCTCGTC CACAACCACAGACACTCAAAC AACCTCGGTA 34176 453 1.72e-05 ACACCTCTGC CAAACTCTCCACCAATACGAC TACTACTACC 30980 478 1.72e-05 CATCATGTTG TAAAAACACAACCAACACTCA CT 269080 470 1.72e-05 CTGCCAACCA TCAATCAACCAAACATCACAC ACATACCATC 21462 94 1.72e-05 GTTTCATAAA CCCCACCTCCACACAACGAGA TAACTACACT 19301 273 1.91e-05 CTCGTCTCAT CAATCACTGCAAAAACCGCCA CGTTCAGTTC 9017 454 2.11e-05 CACAAAATTT CAACCAAAGCACTCAACTACA GATAGGAGCA 268746 462 2.11e-05 CTCCTCTTCC TCCTTCCAGCAACCACCGACA GAGGAGGAAG 21959 461 2.11e-05 ACATTCATTA CACATCCATCGCTCCACCCCT CTCCCTCCTT 24445 419 2.56e-05 ATTAAGTGGA CTCAACCTACACACCTCCTCC AAGCCCTCCC 17492 475 2.56e-05 TCATCAACAC TATCGACACCGCCCAAAAACA TCATT 32744 453 2.82e-05 ATAAACTCAT CCATCACATCATAGCACACAC GTCACACGTC 23061 417 2.82e-05 CATTTGGAGC CACACACCACACAACACGGCC ACCGACGGTA 5666 40 3.10e-05 GAACAAGTAC TAATTCCTACACCGAATCGAC AGTAGGGGAG 35297 415 4.10e-05 TAGACAGCCG CTCAAACAACGACAATACCCA GTGTATGCCA 2128 479 4.49e-05 CTTTACCCTT CACCACAATCTAACCATGAAC A 9608 288 4.91e-05 TCGATGGGAA TGTCTACTACAACGAACGAAA CTACGCAACG 3858 465 4.91e-05 GTAACGGACC CCTAACCAACTACCAATCTCC AAACGCTAAC 269925 453 4.91e-05 CGAGCAGTAC CGAATGCACCAACGAATCGCT GAATTTTATC 37705 477 5.86e-05 GTATCGCTCT CAATTGCAAAAAACAACAAAC TAG 25436 377 5.86e-05 TCCCCTTCCT CGTCCACACAATCCACCGCCG AGGAAATACC 32273 227 6.96e-05 ATCTTTTGAT CCTTCCCAAAACAAAACCGAA GAATGATCTG 23513 162 6.96e-05 CACTGCAGCG CCTCACTACCAACGAACAGAC TCGTAGCTCC 24439 473 7.57e-05 ATCCAGCTTC CAACGAAACCCACAAACCACT TCTTCTC 2157 405 7.57e-05 CCACCGTCCA TATCGCAATCAACACATCGCA AGTCCCATCA 8541 90 8.24e-05 GTAAATGAGT TATCTACAACACTCACCTAAA CTCTTTCACC 3315 379 9.71e-05 AATAGCAGTC CGACGACAGAAACCAACGAAG CCGGTTTAGA 25689 76 9.71e-05 AAACAAACAA CCCAGGCTCCAAACCCTCACA GTTCCATCTC 23812 12 1.05e-04 ATTATTGGGA TGCACAAATCAAAACAAGAAA TTTTGTTCTA 12821 210 1.23e-04 ATCGAGCCTA CAATTACAGCAACGAAGAGCG TATTGTGTTG 6265 51 1.34e-04 TGATAGACGG CGCATCCCTCAAAGCACTACC GGGATTGTTC 269034 125 1.44e-04 ACGGTTACTT CAAATCAACCTCAGCTCCAAT TGATGGCGCA 22847 412 1.68e-04 GCCTAACTCT CCCGACCACCACACAGCGGCA ACACAAAGGT 4038 241 1.95e-04 ACAGCCCTGT TAACTCCTCCGAAGAAGGCAC CGATGCCGAG 262325 150 1.95e-04 ATGATTATGG CTTCTCCATCAAACGTACCAA TGGGTCAGGT 262731 110 2.42e-04 AACAAATGAT TGACAACTGCACTCAATCCCT TCTTACGGAT 2569 377 2.42e-04 CAAATAATTT TGACCCCTCCGACCGACACAG AACAGCCTTG 21698 410 2.99e-04 ACTCCTGAGA TCCTCCCTCCTCCACTCTCAC TTCACACCAC 1374 457 5.74e-04 GACAAAATGC CAAACTAATCTCAGCCACACA CGTTGACAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 38757 4.7e-10 285_[+1]_194 36597 4.7e-10 285_[+1]_194 263350 6.6e-08 203_[+1]_276 25604 6.6e-08 474_[+1]_5 21802 6.6e-08 450_[+1]_29 25365 9.5e-08 443_[+1]_36 32395 1.1e-07 190_[+1]_289 6012 1.9e-07 463_[+1]_16 22499 3.6e-07 387_[+1]_92 24332 5.6e-07 439_[+1]_40 38136 7.5e-07 451_[+1]_28 24323 1e-06 467_[+1]_12 22417 1e-06 477_[+1]_2 40884 1.1e-06 299_[+1]_180 25120 1.1e-06 479_[+1] 1357 1.1e-06 467_[+1]_12 7838 1.3e-06 382_[+1]_97 31516 1.3e-06 408_[+1]_71 264632 1.7e-06 381_[+1]_98 24314 1.7e-06 122_[+1]_357 31819 1.9e-06 479_[+1] 20734 2.2e-06 381_[+1]_98 38662 2.5e-06 340_[+1]_139 38073 2.5e-06 445_[+1]_34 34021 2.5e-06 478_[+1]_1 23490 2.5e-06 391_[+1]_88 263644 2.9e-06 415_[+1]_64 34782 3.2e-06 434_[+1]_45 32882 3.6e-06 283_[+1]_196 39812 4.1e-06 164_[+1]_315 36845 4.1e-06 424_[+1]_55 12971 4.1e-06 397_[+1]_82 33476 4.6e-06 129_[+1]_350 23105 4.6e-06 81_[+1]_398 8995 5.2e-06 472_[+1]_7 262018 5.2e-06 479_[+1] 23336 5.2e-06 463_[+1]_16 5794 5.8e-06 457_[+1]_22 261746 5.8e-06 437_[+1]_42 260748 5.8e-06 452_[+1]_27 9576 6.6e-06 174_[+1]_305 32158 6.6e-06 111_[+1]_368 24907 7.3e-06 395_[+1]_84 34596 8.2e-06 354_[+1]_125 22441 8.2e-06 458_[+1]_21 268880 1e-05 478_[+1]_1 263046 1e-05 385_[+1]_94 8559 1.1e-05 458_[+1]_21 5236 1.1e-05 286_[+1]_193 270120 1.3e-05 54_[+1]_425 22965 1.3e-05 437_[+1]_42 269917 1.4e-05 33_[+1]_446 12259 1.4e-05 360_[+1]_119 261145 1.6e-05 311_[+1]_168 22356 1.6e-05 432_[+1]_47 14890 1.6e-05 466_[+1]_13 34176 1.7e-05 452_[+1]_27 30980 1.7e-05 477_[+1]_2 269080 1.7e-05 469_[+1]_10 21462 1.7e-05 93_[+1]_386 19301 1.9e-05 272_[+1]_207 9017 2.1e-05 453_[+1]_26 268746 2.1e-05 461_[+1]_18 21959 2.1e-05 460_[+1]_19 24445 2.6e-05 418_[+1]_61 17492 2.6e-05 474_[+1]_5 32744 2.8e-05 452_[+1]_27 23061 2.8e-05 416_[+1]_63 5666 3.1e-05 39_[+1]_440 35297 4.1e-05 414_[+1]_65 2128 4.5e-05 478_[+1]_1 9608 4.9e-05 287_[+1]_192 3858 4.9e-05 464_[+1]_15 269925 4.9e-05 452_[+1]_27 37705 5.9e-05 476_[+1]_3 25436 5.9e-05 376_[+1]_103 32273 7e-05 226_[+1]_253 23513 7e-05 161_[+1]_318 24439 7.6e-05 472_[+1]_7 2157 7.6e-05 404_[+1]_75 8541 8.2e-05 89_[+1]_390 3315 9.7e-05 378_[+1]_101 25689 9.7e-05 75_[+1]_404 23812 0.00011 11_[+1]_468 12821 0.00012 209_[+1]_270 6265 0.00013 50_[+1]_429 269034 0.00014 124_[+1]_355 22847 0.00017 411_[+1]_68 4038 0.0002 240_[+1]_239 262325 0.0002 149_[+1]_330 262731 0.00024 109_[+1]_370 2569 0.00024 376_[+1]_103 21698 0.0003 409_[+1]_70 1374 0.00057 456_[+1]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=94 38757 ( 286) CACCACCACCATCCAACCACC 1 36597 ( 286) CACCACCACCATCCAACCACC 1 263350 ( 204) CGCATCCACCACCCATCACAC 1 25604 ( 475) CACAGCCACCACACCACAACC 1 21802 ( 451) CAACACCAACAACCACAAACC 1 25365 ( 444) CACAAACAGCACAAAACCCCA 1 32395 ( 191) CACAACCTCCAACGAACAGAC 1 6012 ( 464) CACCACCACCAGCCACCGCCA 1 22499 ( 388) CTCATCCACCAACCAACATCC 1 24332 ( 440) CAACTACACCGCACCACACAC 1 38136 ( 452) CAAACCCATCAACGCCCCCCG 1 24323 ( 468) CGAAAACAACAACCCCACACA 1 22417 ( 478) CAACCAAACCACACCAAGCAA 1 40884 ( 300) CGCACCCACCACCGACCACAG 1 25120 ( 480) CAAACCCACCATAGCAAAACA 1 1357 ( 468) CACAACCAACAACACCCAACT 1 7838 ( 383) CATCAACATCAACCATTCCAC 1 31516 ( 409) CACACAAAACACCACATCACA 1 264632 ( 382) TACCCACTTCAACAAAACAAC 1 24314 ( 123) CAACACAACCACACAACGGAG 1 31819 ( 480) CTACCACATCACACCAACACC 1 20734 ( 382) TCACCCCAACAACCAACCACT 1 38662 ( 341) CACCAACACCACTACACTGAC 1 38073 ( 446) TAACTCCTCCACCACAAATCA 1 34021 ( 479) CACATCATCCATCACAACCAA 1 23490 ( 392) CGACAACAACAACAACAGCAA 1 263644 ( 416) CCAAACCACAACCACACATCC 1 34782 ( 435) CCACCACTTCAACCAAGCCCA 1 32882 ( 284) CCCCAACTTCACCCCTTCACA 1 39812 ( 165) CACCTCATCAAACAAAACCAA 1 36845 ( 425) CACCACATCCATCAACACGCA 1 12971 ( 398) CAACAACAGCCACCAACAACA 1 33476 ( 130) TGCATCCACCATCCCTCCGCC 1 23105 ( 82) CAACTCCAAAATCAAAAACAA 1 8995 ( 473) CCTCCCCTCCAGCCAACACAC 1 262018 ( 480) CAAACACTCCTCCAACAACCA 1 23336 ( 464) CGACTGCACCACCCCTAAACA 1 5794 ( 458) CACAACCACCAAAGAGCAGCA 1 261746 ( 438) CACACAATCCTCCAAACCGCC 1 260748 ( 453) CACCAACTTCACAACAAACAG 1 9576 ( 175) CCACCACATCAACGATTCAAA 1 32158 ( 112) CAACACCAACACAAAAGTCAA 1 24907 ( 396) CAACTCCACCACCAGCAATCC 1 34596 ( 355) CAAACAAACAAACAAACTCAC 1 22441 ( 459) CACTGCCACCACAACACGTAA 1 268880 ( 479) CACTCCCATCACCTCACACAC 1 263046 ( 386) CAAAACCAACAGTCAACCGAA 1 8559 ( 459) TACCAACACAATCCCATCGCA 1 5236 ( 287) CTTCTCCATCACCCATCACCG 1 270120 ( 55) CAAACACTCAATCAACACCAC 1 22965 ( 438) CTCCTACATCACCACATTCAC 1 269917 ( 34) CACAATCTACAACCAATGACA 1 12259 ( 361) CACCAGATCCATCAATCCCCA 1 261145 ( 312) CGCATCCATCACTACCACAAC 1 22356 ( 433) TAATACCATCACCCCCTCTCC 1 14890 ( 467) CACAACCACAGACACTCAAAC 1 34176 ( 453) CAAACTCTCCACCAATACGAC 1 30980 ( 478) TAAAAACACAACCAACACTCA 1 269080 ( 470) TCAATCAACCAAACATCACAC 1 21462 ( 94) CCCCACCTCCACACAACGAGA 1 19301 ( 273) CAATCACTGCAAAAACCGCCA 1 9017 ( 454) CAACCAAAGCACTCAACTACA 1 268746 ( 462) TCCTTCCAGCAACCACCGACA 1 21959 ( 461) CACATCCATCGCTCCACCCCT 1 24445 ( 419) CTCAACCTACACACCTCCTCC 1 17492 ( 475) TATCGACACCGCCCAAAAACA 1 32744 ( 453) CCATCACATCATAGCACACAC 1 23061 ( 417) CACACACCACACAACACGGCC 1 5666 ( 40) TAATTCCTACACCGAATCGAC 1 35297 ( 415) CTCAAACAACGACAATACCCA 1 2128 ( 479) CACCACAATCTAACCATGAAC 1 9608 ( 288) TGTCTACTACAACGAACGAAA 1 3858 ( 465) CCTAACCAACTACCAATCTCC 1 269925 ( 453) CGAATGCACCAACGAATCGCT 1 37705 ( 477) CAATTGCAAAAAACAACAAAC 1 25436 ( 377) CGTCCACACAATCCACCGCCG 1 32273 ( 227) CCTTCCCAAAACAAAACCGAA 1 23513 ( 162) CCTCACTACCAACGAACAGAC 1 24439 ( 473) CAACGAAACCCACAAACCACT 1 2157 ( 405) TATCGCAATCAACACATCGCA 1 8541 ( 90) TATCTACAACACTCACCTAAA 1 3315 ( 379) CGACGACAGAAACCAACGAAG 1 25689 ( 76) CCCAGGCTCCAAACCCTCACA 1 23812 ( 12) TGCACAAATCAAAACAAGAAA 1 12821 ( 210) CAATTACAGCAACGAAGAGCG 1 6265 ( 51) CGCATCCCTCAAAGCACTACC 1 269034 ( 125) CAAATCAACCTCAGCTCCAAT 1 22847 ( 412) CCCGACCACCACACAGCGGCA 1 4038 ( 241) TAACTCCTCCGAAGAAGGCAC 1 262325 ( 150) CTTCTCCATCAAACGTACCAA 1 262731 ( 110) TGACAACTGCACTCAATCCCT 1 2569 ( 377) TGACCCCTCCGACCGACACAG 1 21698 ( 410) TCCTCCCTCCTCCACTCTCAC 1 1374 ( 457) CAAACTAATCTCAGCCACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 54240 bayes= 9.59592 E= 1.9e-055 -1320 178 -1320 -37 116 -45 -58 -181 71 90 -1320 -103 56 104 -448 -116 44 30 -168 8 52 119 -216 -303 -56 179 -1320 -462 139 -345 -1320 8 -40 107 -148 -23 -107 190 -1320 -1320 163 -345 -168 -181 60 90 -290 -103 16 143 -1320 -181 44 97 -48 -462 113 72 -290 -1320 116 -13 -348 -62 -1 119 -248 -71 21 87 -40 -162 39 63 -31 -145 74 122 -448 -1320 71 76 -131 -181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 94 E= 1.9e-055 0.000000 0.797872 0.000000 0.202128 0.595745 0.170213 0.159574 0.074468 0.436170 0.436170 0.000000 0.127660 0.393617 0.478723 0.010638 0.117021 0.361702 0.287234 0.074468 0.276596 0.382979 0.531915 0.053191 0.031915 0.180851 0.808511 0.000000 0.010638 0.702128 0.021277 0.000000 0.276596 0.202128 0.489362 0.085106 0.223404 0.127660 0.872340 0.000000 0.000000 0.829787 0.021277 0.074468 0.074468 0.404255 0.436170 0.031915 0.127660 0.297872 0.627660 0.000000 0.074468 0.361702 0.457447 0.170213 0.010638 0.585106 0.382979 0.031915 0.000000 0.595745 0.212766 0.021277 0.170213 0.265957 0.531915 0.042553 0.159574 0.308511 0.425532 0.180851 0.085106 0.351064 0.361702 0.191489 0.095745 0.446809 0.542553 0.010638 0.000000 0.436170 0.393617 0.095745 0.074468 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CT]A[AC][CA][ACT][CA]C[AT][CTA]CA[CA][CA][CA][AC][AC][CA][CA][CA][CA][AC] -------------------------------------------------------------------------------- Time 89.80 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 69 llr = 699 E-value = 1.1e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 13:512311::2:2:22:41: pos.-specific C ::1:111::11:3:1111::1 probability G 8274552565565185:9329 matrix T 14113244334127:27:26: bits 2.1 1.9 1.7 * 1.5 * * Relative 1.3 * * * * Entropy 1.1 * * * * (14.6 bits) 0.8 * * * ** * 0.6 * ** ** ***** ** ** 0.4 **** ************** 0.2 ********************* 0.0 --------------------- Multilevel GTGAGGTGGGGGGTGGTGATG consensus A GTTATTTTACA A GG sequence G G T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 262731 480 4.08e-09 GCGTCGGTGA GAGAGAGTGGTGGTGGTGTTG 3858 213 1.32e-08 TTTTGGCATG GTGGTGTTGGTTGTGGTGTTG TAGCGGCGGC 21802 117 4.49e-08 GTAGGATGGC GAGAGGGGGTTGGTCATGGTG GAGAGTGATT 1357 18 5.29e-08 TTGGGAATCG GTGGAGTGGTGGTTGGTGGAG GACAACAACG 21959 205 9.99e-08 TACGGCGGAG GTCTTGTGGGTGCTGGTGTTG CCGGTGGGCG 261746 248 1.57e-07 CGCTGCTGCA GATAGGATGGTGGTGTTGAGG CTTGATCCCT 1374 244 2.11e-07 GATGAGTGGA GTTTGGTGGCGGGTGATGATG GATCCATCAT 262018 273 2.80e-07 GACGGACGAG GGGAGAGGTTGGCTGTTGGTG GGAGGGAGAG 11508 197 2.80e-07 AAATGCTTTG GGGAGGTGTTTGGGGTTGATG TAGAAGAGGG 31819 177 3.22e-07 CGTGCCTCTG GAGAAGATGGCGGTGGCGATG ATGATGGATG 38073 53 3.70e-07 GGGAAAGGTG GTGAGGAAGGGAGTGCTGGTG CTGGCTTCAG 24015 78 4.85e-07 GTCGCTTTGC GAGGTGGTGTGACGGGTGATG CCTCCAACCA 24323 345 6.31e-07 TTTACTTTTC GAGGTGTGGCGGGTCGAGTTG TGCTTGCCGT 9118 134 7.18e-07 TTAGAAACCA GAGAAATGGATGTTGGTGATG GATGGATCAG 12259 147 9.25e-07 TCCGGTGGTG GGGGAGTGATGGGTGATGGGG GAGTGATGGG 24445 80 1.05e-06 GAGGGAGGGA GAGGGCTGGGCGCTGGAGAGG TCATGTTGGA 20960 143 1.05e-06 GTGGGGATAG GGGAGACTGGGGGAGGCGGTG TAAGTGATGG 268327 259 1.19e-06 GGGAACCATT GTGAGTAGTGTGTTGGTCGAG AGAGTTGCAA 12821 345 1.19e-06 ATGAGTTTAC GTGAGGTGGGGGGAAGTGAAG GTGGGCGAAT 3315 129 1.34e-06 ATGGACGAGA GGGGACGGGGGTGTGTTGGTG AAAGCGTGAA 11147 40 1.34e-06 TCAGCAATAG GTGATGCTGCGATAGGTGGTG CATCTTCACC 23336 318 1.51e-06 CAATGATGTT GTGAATATTGTTCTGGTGTTG TGTGGATGGA 22482 83 1.51e-06 AGGCTTCGCT GAGAGTTGTGTGGAGGTCGAG GAAATGGATG 22965 262 1.91e-06 CATCTGAGTC GTCATCTGGTGGCTCGTGTTG CAAATCGACG 24439 278 3.02e-06 GAAGAAGAGA GAGTTATTTGTGCTGCTGATG GGTTTGGTTT 261910 346 3.38e-06 GTACAACGCA GGTAAGAGTGTTGTGATGGTG GCTACGAGTG 25604 364 4.20e-06 AAGACAAGGC GGGGGGGGGGGGCAGGTTAGG ACTAGTCAAG 20734 71 4.20e-06 TGTCCGATGG GTGATGTTGGGAGTGAACTGG AGTGTTTGGT 2128 193 4.67e-06 GCGAGACATG GTCGGGGGATGGCTGGAGAGG TTTGTGTTCT 37705 170 5.20e-06 TACGAGGATG GAGGCAAGAGCGGTGGTGGGG ATGATAAGGG 34782 205 5.77e-06 CGCATAGCGG TGGAGGTGGCTGGTGGCGAAG GCATGTGTAT 35297 5 6.40e-06 ATGT GTGTGTGTGGCGGTGGCGGAG CCGTGGAAGA 38757 188 7.10e-06 GAGTGCTGAC GAGTGGTGCTGGTTGGTCAGG TCTGAGTCGT 36597 188 7.10e-06 GAGTGCTGAC GAGTGGTGCTGGTTGGTCAGG TCTGAGTCGT 35584 338 7.10e-06 GCGGGGTTCG GTGGACAGCGGGGAGGAGATG TCAATACATC 268880 350 7.10e-06 CAGTAGTTTC GAGGATTTGGGATTGGTCTGG TGAAAGAAGG 270120 323 7.85e-06 AAGGCCAGTG GAGAGGAGGAGGGAGACGAAG AGGAGAGCGG 25725 312 8.68e-06 AAGATGCTGT GGGATATGTTTACGGATGATG AGTGATCCAT 263046 157 9.59e-06 AAAGCAGCTT GTCATGATGCTACTCATGATG ACACCCCGAG 25689 380 9.59e-06 TTGCCGACGG GAGGCGTGGGTGTGTGTGGTG CACGACGTTA 25120 214 9.59e-06 TTGTTTCTTT GGGGTCGATGGTGTGATGGTG AGAAGAGGTT 30980 402 1.06e-05 TTCCGTTTGG TTGATACGGCTGGTGTTGATG GAGAAAAGAT 38136 148 1.17e-05 GGCGTGTGGT GAGATTGTGAGTGTGGAGTTG CCTTTGATGG 34596 22 1.28e-05 GTAATGGTAT GTTGGGAGGGGGGGGGTCGTC CATTGTAAGG 22847 244 1.41e-05 CTGAAATGAA GGCGGTGGTGCGGTGTTGTGG TCTATCGGTA 21422 338 1.41e-05 GGCAAATGGG GTGACAATATTGGTGCTGTTG AAGAGGAGGA 4038 413 1.55e-05 CTCAATCTTT GTGACCGGTTGGGTGTTGGTC CTCACTTTGA 24314 290 1.55e-05 GAGCACGGAG AGGTGTATGCGAGAGGTGGTG TATTCCCTCG 8559 101 1.70e-05 CTGGAACTTT ATGGTTTGGGTGCTCAAGATG CGTTGATGTG 35194 460 1.70e-05 GCCCATGAAG GAGGAGATTGGACACGAGGTG ACGGCAACCA 19301 203 1.70e-05 GCACGCTACT GGCAGTAAGGGTGAGTTGATG TGTTGTTGAT 16287 27 1.87e-05 CACGCTCAAG GAGAGTCTAGGACTGGAGAGG GCTACATTAT 25365 33 2.24e-05 GAAGGAGAGA GACGGAGTGGTATAGATGTGG TAGTCTGTGG 22499 155 2.24e-05 GTGTTGCGTG TTGGTGTGTTTGCAGATCATG TACACAAATT 17492 80 2.24e-05 AGTGTTGATG TACATCATGTTGTTGATGGTG TCTGCCATCA 9017 232 2.67e-05 CTTGCAACTG GTGTGACGTCTGTTGAAGATG ATCAAGTACA 5794 384 2.67e-05 TGCGCAAGTG ATGATGATTTCTGTGATGTTG ATGGCTCTCA 269080 232 2.67e-05 CTCTCACTGG AAGGTATTGGTACAGTTGTTG ACGACGTGTT 22441 226 2.67e-05 CTTCGTTCGA GGATGTTGGGTGTGGGTGATG GGCAGCTCAC 5236 147 3.18e-05 GGTATTCTAC ATGACGATGCTATTGTTGTTG TGAGGATGAG 34176 205 3.18e-05 CGTCCGACAT TGTTGCTTGGTGTTGGTGGGG TGCTTTGATT 262325 431 4.83e-05 TTAGATGCTT GTTGTGTAAGGATTCGTGGTG TTGCGTTTCG 34021 87 7.77e-05 CAAGAACTTG GGCACGTTGTTGCACGAGAAG ATCTTCGTCG 23490 335 7.77e-05 CGTTGGAAGT ATGGGGAGTTGAGAGATGAGC AACCACAGGA 6012 62 9.04e-05 CATCGCGACG GTCGCTGGTTGGTTGGTGAAC TGTGTTTTCA 24907 43 9.04e-05 TCTTTGCCAT GTTAGTGTTGGGTCGGCGGTG ATTGCAATCA 23061 395 1.05e-04 ATCACAGCAC GAGATGATGTGTCATTTGGAG CCACACACCA 9576 341 1.13e-04 TCAACGAGGA GGGGGGATTTCAGACATCTTG TCCTTGTCTT 38662 250 1.40e-04 CTCGCGCAAA GTTAGAGAGGGGGTCCAGAGG GGGTACTTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 262731 4.1e-09 479_[+2] 3858 1.3e-08 212_[+2]_267 21802 4.5e-08 116_[+2]_363 1357 5.3e-08 17_[+2]_462 21959 1e-07 204_[+2]_275 261746 1.6e-07 247_[+2]_232 1374 2.1e-07 243_[+2]_236 262018 2.8e-07 272_[+2]_207 11508 2.8e-07 196_[+2]_283 31819 3.2e-07 176_[+2]_303 38073 3.7e-07 52_[+2]_427 24015 4.8e-07 77_[+2]_402 24323 6.3e-07 344_[+2]_135 9118 7.2e-07 133_[+2]_346 12259 9.3e-07 146_[+2]_333 24445 1e-06 79_[+2]_400 20960 1e-06 142_[+2]_337 268327 1.2e-06 258_[+2]_221 12821 1.2e-06 344_[+2]_135 3315 1.3e-06 128_[+2]_351 11147 1.3e-06 39_[+2]_440 23336 1.5e-06 317_[+2]_162 22482 1.5e-06 82_[+2]_397 22965 1.9e-06 261_[+2]_218 24439 3e-06 277_[+2]_202 261910 3.4e-06 345_[+2]_134 25604 4.2e-06 363_[+2]_116 20734 4.2e-06 70_[+2]_409 2128 4.7e-06 192_[+2]_287 37705 5.2e-06 169_[+2]_310 34782 5.8e-06 204_[+2]_275 35297 6.4e-06 4_[+2]_475 38757 7.1e-06 187_[+2]_292 36597 7.1e-06 187_[+2]_292 35584 7.1e-06 337_[+2]_142 268880 7.1e-06 349_[+2]_130 270120 7.9e-06 322_[+2]_157 25725 8.7e-06 311_[+2]_168 263046 9.6e-06 156_[+2]_323 25689 9.6e-06 379_[+2]_100 25120 9.6e-06 213_[+2]_266 30980 1.1e-05 401_[+2]_78 38136 1.2e-05 147_[+2]_332 34596 1.3e-05 21_[+2]_458 22847 1.4e-05 243_[+2]_236 21422 1.4e-05 337_[+2]_142 4038 1.6e-05 412_[+2]_67 24314 1.6e-05 289_[+2]_190 8559 1.7e-05 100_[+2]_379 35194 1.7e-05 459_[+2]_20 19301 1.7e-05 202_[+2]_277 16287 1.9e-05 26_[+2]_453 25365 2.2e-05 32_[+2]_447 22499 2.2e-05 154_[+2]_325 17492 2.2e-05 79_[+2]_400 9017 2.7e-05 231_[+2]_248 5794 2.7e-05 383_[+2]_96 269080 2.7e-05 231_[+2]_248 22441 2.7e-05 225_[+2]_254 5236 3.2e-05 146_[+2]_333 34176 3.2e-05 204_[+2]_275 262325 4.8e-05 430_[+2]_49 34021 7.8e-05 86_[+2]_393 23490 7.8e-05 334_[+2]_145 6012 9e-05 61_[+2]_418 24907 9e-05 42_[+2]_437 23061 0.0001 394_[+2]_85 9576 0.00011 340_[+2]_139 38662 0.00014 249_[+2]_230 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=69 262731 ( 480) GAGAGAGTGGTGGTGGTGTTG 1 3858 ( 213) GTGGTGTTGGTTGTGGTGTTG 1 21802 ( 117) GAGAGGGGGTTGGTCATGGTG 1 1357 ( 18) GTGGAGTGGTGGTTGGTGGAG 1 21959 ( 205) GTCTTGTGGGTGCTGGTGTTG 1 261746 ( 248) GATAGGATGGTGGTGTTGAGG 1 1374 ( 244) GTTTGGTGGCGGGTGATGATG 1 262018 ( 273) GGGAGAGGTTGGCTGTTGGTG 1 11508 ( 197) GGGAGGTGTTTGGGGTTGATG 1 31819 ( 177) GAGAAGATGGCGGTGGCGATG 1 38073 ( 53) GTGAGGAAGGGAGTGCTGGTG 1 24015 ( 78) GAGGTGGTGTGACGGGTGATG 1 24323 ( 345) GAGGTGTGGCGGGTCGAGTTG 1 9118 ( 134) GAGAAATGGATGTTGGTGATG 1 12259 ( 147) GGGGAGTGATGGGTGATGGGG 1 24445 ( 80) GAGGGCTGGGCGCTGGAGAGG 1 20960 ( 143) GGGAGACTGGGGGAGGCGGTG 1 268327 ( 259) GTGAGTAGTGTGTTGGTCGAG 1 12821 ( 345) GTGAGGTGGGGGGAAGTGAAG 1 3315 ( 129) GGGGACGGGGGTGTGTTGGTG 1 11147 ( 40) GTGATGCTGCGATAGGTGGTG 1 23336 ( 318) GTGAATATTGTTCTGGTGTTG 1 22482 ( 83) GAGAGTTGTGTGGAGGTCGAG 1 22965 ( 262) GTCATCTGGTGGCTCGTGTTG 1 24439 ( 278) GAGTTATTTGTGCTGCTGATG 1 261910 ( 346) GGTAAGAGTGTTGTGATGGTG 1 25604 ( 364) GGGGGGGGGGGGCAGGTTAGG 1 20734 ( 71) GTGATGTTGGGAGTGAACTGG 1 2128 ( 193) GTCGGGGGATGGCTGGAGAGG 1 37705 ( 170) GAGGCAAGAGCGGTGGTGGGG 1 34782 ( 205) TGGAGGTGGCTGGTGGCGAAG 1 35297 ( 5) GTGTGTGTGGCGGTGGCGGAG 1 38757 ( 188) GAGTGGTGCTGGTTGGTCAGG 1 36597 ( 188) GAGTGGTGCTGGTTGGTCAGG 1 35584 ( 338) GTGGACAGCGGGGAGGAGATG 1 268880 ( 350) GAGGATTTGGGATTGGTCTGG 1 270120 ( 323) GAGAGGAGGAGGGAGACGAAG 1 25725 ( 312) GGGATATGTTTACGGATGATG 1 263046 ( 157) GTCATGATGCTACTCATGATG 1 25689 ( 380) GAGGCGTGGGTGTGTGTGGTG 1 25120 ( 214) GGGGTCGATGGTGTGATGGTG 1 30980 ( 402) TTGATACGGCTGGTGTTGATG 1 38136 ( 148) GAGATTGTGAGTGTGGAGTTG 1 34596 ( 22) GTTGGGAGGGGGGGGGTCGTC 1 22847 ( 244) GGCGGTGGTGCGGTGTTGTGG 1 21422 ( 338) GTGACAATATTGGTGCTGTTG 1 4038 ( 413) GTGACCGGTTGGGTGTTGGTC 1 24314 ( 290) AGGTGTATGCGAGAGGTGGTG 1 8559 ( 101) ATGGTTTGGGTGCTCAAGATG 1 35194 ( 460) GAGGAGATTGGACACGAGGTG 1 19301 ( 203) GGCAGTAAGGGTGAGTTGATG 1 16287 ( 27) GAGAGTCTAGGACTGGAGAGG 1 25365 ( 33) GACGGAGTGGTATAGATGTGG 1 22499 ( 155) TTGGTGTGTTTGCAGATCATG 1 17492 ( 80) TACATCATGTTGTTGATGGTG 1 9017 ( 232) GTGTGACGTCTGTTGAAGATG 1 5794 ( 384) ATGATGATTTCTGTGATGTTG 1 269080 ( 232) AAGGTATTGGTACAGTTGTTG 1 22441 ( 226) GGATGTTGGGTGTGGGTGATG 1 5236 ( 147) ATGACGATGCTATTGTTGTTG 1 34176 ( 205) TGTTGCTTGGTGTTGGTGGGG 1 262325 ( 431) GTTGTGTAAGGATTCGTGGTG 1 34021 ( 87) GGCACGTTGTTGCACGAGAAG 1 23490 ( 335) ATGGGGAGTTGAGAGATGAGC 1 6012 ( 62) GTCGCTGGTTGGTTGGTGAAC 1 24907 ( 43) GTTAGTGTTGGGTCGGCGGTG 1 23061 ( 395) GAGATGATGTGTCATTTGGAG 1 9576 ( 341) GGGGGGATTTCAGACATCTTG 1 38662 ( 250) GTTAGAGAGGGGGTCCAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 54240 bayes= 10.4259 E= 1.1e-030 -162 -1275 182 -185 32 -1275 5 68 -420 -69 160 -117 88 -1275 61 -85 -88 -120 96 15 -50 -101 105 -37 19 -169 -4 58 -188 -1275 113 63 -162 -242 132 7 -262 -84 113 22 -1275 -120 105 63 -20 -1275 142 -100 -1275 16 105 -9 -12 -400 -145 132 -420 -69 177 -317 -12 -201 117 -71 -62 -142 -1275 150 -1275 -84 184 -417 65 -1275 55 -17 -88 -1275 -4 125 -1275 -201 198 -1275 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 69 E= 1.1e-030 0.086957 0.000000 0.840580 0.072464 0.333333 0.000000 0.246377 0.420290 0.014493 0.144928 0.724638 0.115942 0.492754 0.000000 0.362319 0.144928 0.144928 0.101449 0.463768 0.289855 0.188406 0.115942 0.492754 0.202899 0.304348 0.072464 0.231884 0.391304 0.072464 0.000000 0.521739 0.405797 0.086957 0.043478 0.594203 0.275362 0.043478 0.130435 0.521739 0.304348 0.000000 0.101449 0.492754 0.405797 0.231884 0.000000 0.637681 0.130435 0.000000 0.260870 0.492754 0.246377 0.246377 0.014493 0.086957 0.652174 0.014493 0.144928 0.811594 0.028986 0.246377 0.057971 0.536232 0.159420 0.173913 0.086957 0.000000 0.739130 0.000000 0.130435 0.855072 0.014493 0.420290 0.000000 0.347826 0.231884 0.144928 0.000000 0.231884 0.623188 0.000000 0.057971 0.942029 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- G[TAG]G[AG][GT][GT][TAG][GT][GT][GT][GT][GA][GCT][TA]G[GA]TG[AGT][TG]G -------------------------------------------------------------------------------- Time 173.65 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 60 llr = 597 E-value = 2.9e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :41212213::3:2:4::541 pos.-specific C 6:655647357284725a319 probability G :2:21::11:211:31::2:: matrix T 34313352451425:35::5: bits 2.1 1.9 * 1.7 * * 1.5 * * Relative 1.3 * * Entropy 1.1 * * * * (14.4 bits) 0.8 * * * * ** * 0.6 * * * ** * * ***** 0.4 *** **** ** *** ***** 0.2 *********** ********* 0.0 --------------------- Multilevel CACCCCTCTCCTCTCACCATC consensus TTTATTC ATGA CGTT CA sequence G C C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 20734 419 7.21e-09 CGTTCTCTCG CTCCTCCCTCCACTGACCAAC CCGACTCCTT 1357 444 2.00e-08 AGGGGACTAT CTTCTCCCCCCCCTCTCCCTC AACCACAACC 40884 367 1.16e-07 TGTCACCCGT CACCCCTGCCCCCCCCCCCAC CGCAACCCTT 38757 342 2.52e-07 TGTGTTGACT CTCCTCTCTTCGCAGACCAAC ACCTTCACCC 36597 342 2.52e-07 TGTGTTGACT CTCCTCTCTTCGCAGACCAAC ACCTTCACCC 263644 442 2.52e-07 CATCCTCTCT CTCCCACACCCTCTCCCCAAC CTGCACCCCA 31516 446 7.72e-07 AGTAGATCAC CGTCACACACCACCCATCAAC ACACCGACCC 25436 348 8.80e-07 TTGTGGACAC CGTACCACTTGTCCCTCCCTC CCCTTCCTCG 270120 14 1.00e-06 CTCGAAGGGA TACCCGACACCTCCCACCCTC CCACAAACAA 9576 22 1.14e-06 ATCATCACCC TTTGCCTCCTCTTTCTTCCTC TGTACTGATT 3315 226 1.14e-06 TTGAACTTTC CACCCCAGTCCTCCGTCCGTC CGTCCGTCCG 261145 343 1.14e-06 ATTACCAACA CTACCCCTACCACTCATCGTC ACTACGGAAG 7838 404 1.46e-06 ACCATTCCAC TTCCATCCATCACCGTCCATC TGTTTGTTGC 34782 375 1.46e-06 CGTCCAAGCC TACCTCCCCTTCCTGACCATC CACTCCCTCT 32744 297 1.46e-06 TTGGTCTCCC CTCCTCTCTCTATCCTCCCAC ACAAAGCCAG 24439 415 1.46e-06 TCCTTCTTTC CTTCCCTCTTGATTCACCACC TCCACAGAAG 21698 433 1.65e-06 ACTCTCACTT CACACCACACGTTCCTCCCTC TTCTCTATGC 36845 281 1.86e-06 CCAGCCTCAC CATCCATCCCTCCACACCATC CATCCCATCA 12259 392 2.10e-06 TCTGCGAAAG CACAAATCACCCCTGTTCATC CCTGAGAAGC 9118 457 2.36e-06 CCGTCCTTCC TTCCGTCCTTCCCTGTCCGTC GTCCGTGCTC 268880 452 2.36e-06 TGGCGCCAAT TATCCATCACCACTCATCCTA ACCCATCACT 23812 452 2.36e-06 GGGCGTCGAC CGCCCCTCCCGACCACTCATC GCATCACACA 22417 454 2.65e-06 CTCTCCCAAC CACCATTCGTCTTCCACCAAC CATCAACCAA 5794 434 2.97e-06 AACAAACCCC TTTACTTCTCTGCTCATCATC GACCACAACC 21959 424 3.33e-06 TTCCCGCTCG TTTGCCTCAACTCCCTTCATC GACCACACAT 25365 397 3.73e-06 AACGTTCGAA CAAGCCCCTTCTCTCCCCAAA GCGTCACCTG 260748 408 4.64e-06 CGACGGACAG CGCTCTCCCTCTCAGACCCAC AACTCTCTTA 22965 145 6.38e-06 TAAGACTGCA CATCCTTATCCTCTCTCTATC AGCATCATCT 21462 455 6.38e-06 TCATGCACAT CGTACATCGCCACTGTTCCAC GGAAGATCGA 19301 248 7.85e-06 CATAATACAC CACCGCCTATCATTCCTCGTC TCATCAATCA 12971 373 7.85e-06 ATCACATCGA CTCTGTTCACCACACACCGAC GTGCCAACAA 16287 144 8.68e-06 TGACATTTCA GATCCTCCTCGACTGCCCATC ATTTTGAATG 9608 239 9.60e-06 GAGGAGGTTT CAACCAAAATCCCTCTTCATC TGGCAGATGT 32395 229 9.60e-06 CAACAGAACA CGTTTCCTTCCCCCCCTCCAC CCGTCTGTCT 35584 52 1.06e-05 CATGATTCTA TTCGCAACACTTCTCTTCCTC TTTGAACTAA 8995 444 1.17e-05 CACTCTTTGT CTCCTATCATCCGTCACCACC AGTGCAGTCC 9017 365 1.42e-05 ATACCGCTAC TTCCTCCGCCGACACCTCCAC CGATCCATGC 35297 375 1.42e-05 GGTTGATAGA TACACCACCGCACCGCTCCTC CGAGTAGCGT 38073 474 1.71e-05 TCACTCTCTT CACACCTCGCCTCCCTTTACC ATCAAC 269080 389 1.87e-05 GAAGCTGTTT TTCCTCTCTTGCCGCCCCGTC CGTCAAAAAT 6265 403 2.45e-05 ATCAGACGTG TGACCCTTCACTCTCTCCAAC CACTTCTATG 262018 151 2.68e-05 GGTACAGTGC CTTCTTTGATGACTCGTCAAC GAACAACAAC 34176 403 2.92e-05 CGCCGCCACT CGTTGTCCGCCTCCCATCGAC GTGACCAACG 25725 453 3.19e-05 ATAACGATAC TACTCATGTCCTTACATCATC AAATCTGTAA 25689 13 3.19e-05 AAATCGACTG GACGCCCCTCGTCTCGTCGTC CCGCCATTCT 25604 138 3.19e-05 CACCTCATCG CACGTCAATTCTTTGCTCCTC TCATACTCTC 5236 477 3.47e-05 AGTCCATCAT CATCACTCCTCGGCCATCACC ATC 8559 325 3.77e-05 ATGAATACCG TAAAGCCTCTGTCTCCTCATC AGACGACTGT 32882 263 3.77e-05 TCCTCAATCT CTCTGTCTATCTCTCACCAAA CCCCAACTTC 269925 350 3.77e-05 TACCAGTGCT CACAATCTCTGGCCCATCCAC TCAAAACTGC 22441 407 3.77e-05 TGGCGCCTCT CACGCTTCCTCGCACTGCCAC AAATTTCCGA 31819 447 4.10e-05 TGCGTCGTCT CCTCGCCCGCCATCCATCAAC AGCTCAACGA 268746 233 4.10e-05 TCATATCAAG CGAACTTCTTCCCCGATCCAA AGACGATGAC 268412 322 4.45e-05 TCAACGTCCA CGTCTGTATCGTCTGTCCATC GTCCGTAAGA 263350 45 5.67e-05 CTTTTGTTGG TACACCATTCGACCACCCATC GTCTTCATAA 21422 388 5.67e-05 CAGTGATGAC TTCACTTCTTCGCACGTCAAA TCAAACAGCA 38662 471 6.13e-05 ACATCACACG AGTACACCATCACCGTCCATC AACACAACC 269917 368 6.13e-05 ATCAAAATGG TTCATCAATTCTCTCCCCGTA GAGGTACACT 34021 214 8.98e-05 CTACTGTAGT TGTGGCTCTTTCTTCTTCCAC GGCTGAGTTC 25120 442 9.66e-05 GAGCCAACCA CTCGTCCTCGCCGCCATCATC ACCCTCTCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 20734 7.2e-09 418_[+3]_61 1357 2e-08 443_[+3]_36 40884 1.2e-07 366_[+3]_113 38757 2.5e-07 341_[+3]_138 36597 2.5e-07 341_[+3]_138 263644 2.5e-07 441_[+3]_38 31516 7.7e-07 445_[+3]_34 25436 8.8e-07 347_[+3]_132 270120 1e-06 13_[+3]_466 9576 1.1e-06 21_[+3]_458 3315 1.1e-06 225_[+3]_254 261145 1.1e-06 342_[+3]_137 7838 1.5e-06 403_[+3]_76 34782 1.5e-06 374_[+3]_105 32744 1.5e-06 296_[+3]_183 24439 1.5e-06 414_[+3]_65 21698 1.7e-06 432_[+3]_47 36845 1.9e-06 280_[+3]_199 12259 2.1e-06 391_[+3]_88 9118 2.4e-06 456_[+3]_23 268880 2.4e-06 451_[+3]_28 23812 2.4e-06 451_[+3]_28 22417 2.7e-06 453_[+3]_26 5794 3e-06 433_[+3]_46 21959 3.3e-06 423_[+3]_56 25365 3.7e-06 396_[+3]_83 260748 4.6e-06 407_[+3]_72 22965 6.4e-06 144_[+3]_335 21462 6.4e-06 454_[+3]_25 19301 7.8e-06 247_[+3]_232 12971 7.8e-06 372_[+3]_107 16287 8.7e-06 143_[+3]_336 9608 9.6e-06 238_[+3]_241 32395 9.6e-06 228_[+3]_251 35584 1.1e-05 51_[+3]_428 8995 1.2e-05 443_[+3]_36 9017 1.4e-05 364_[+3]_115 35297 1.4e-05 374_[+3]_105 38073 1.7e-05 473_[+3]_6 269080 1.9e-05 388_[+3]_91 6265 2.5e-05 402_[+3]_77 262018 2.7e-05 150_[+3]_329 34176 2.9e-05 402_[+3]_77 25725 3.2e-05 452_[+3]_27 25689 3.2e-05 12_[+3]_467 25604 3.2e-05 137_[+3]_342 5236 3.5e-05 476_[+3]_3 8559 3.8e-05 324_[+3]_155 32882 3.8e-05 262_[+3]_217 269925 3.8e-05 349_[+3]_130 22441 3.8e-05 406_[+3]_73 31819 4.1e-05 446_[+3]_33 268746 4.1e-05 232_[+3]_247 268412 4.5e-05 321_[+3]_158 263350 5.7e-05 44_[+3]_435 21422 5.7e-05 387_[+3]_92 38662 6.1e-05 470_[+3]_9 269917 6.1e-05 367_[+3]_112 34021 9e-05 213_[+3]_266 25120 9.7e-05 441_[+3]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=60 20734 ( 419) CTCCTCCCTCCACTGACCAAC 1 1357 ( 444) CTTCTCCCCCCCCTCTCCCTC 1 40884 ( 367) CACCCCTGCCCCCCCCCCCAC 1 38757 ( 342) CTCCTCTCTTCGCAGACCAAC 1 36597 ( 342) CTCCTCTCTTCGCAGACCAAC 1 263644 ( 442) CTCCCACACCCTCTCCCCAAC 1 31516 ( 446) CGTCACACACCACCCATCAAC 1 25436 ( 348) CGTACCACTTGTCCCTCCCTC 1 270120 ( 14) TACCCGACACCTCCCACCCTC 1 9576 ( 22) TTTGCCTCCTCTTTCTTCCTC 1 3315 ( 226) CACCCCAGTCCTCCGTCCGTC 1 261145 ( 343) CTACCCCTACCACTCATCGTC 1 7838 ( 404) TTCCATCCATCACCGTCCATC 1 34782 ( 375) TACCTCCCCTTCCTGACCATC 1 32744 ( 297) CTCCTCTCTCTATCCTCCCAC 1 24439 ( 415) CTTCCCTCTTGATTCACCACC 1 21698 ( 433) CACACCACACGTTCCTCCCTC 1 36845 ( 281) CATCCATCCCTCCACACCATC 1 12259 ( 392) CACAAATCACCCCTGTTCATC 1 9118 ( 457) TTCCGTCCTTCCCTGTCCGTC 1 268880 ( 452) TATCCATCACCACTCATCCTA 1 23812 ( 452) CGCCCCTCCCGACCACTCATC 1 22417 ( 454) CACCATTCGTCTTCCACCAAC 1 5794 ( 434) TTTACTTCTCTGCTCATCATC 1 21959 ( 424) TTTGCCTCAACTCCCTTCATC 1 25365 ( 397) CAAGCCCCTTCTCTCCCCAAA 1 260748 ( 408) CGCTCTCCCTCTCAGACCCAC 1 22965 ( 145) CATCCTTATCCTCTCTCTATC 1 21462 ( 455) CGTACATCGCCACTGTTCCAC 1 19301 ( 248) CACCGCCTATCATTCCTCGTC 1 12971 ( 373) CTCTGTTCACCACACACCGAC 1 16287 ( 144) GATCCTCCTCGACTGCCCATC 1 9608 ( 239) CAACCAAAATCCCTCTTCATC 1 32395 ( 229) CGTTTCCTTCCCCCCCTCCAC 1 35584 ( 52) TTCGCAACACTTCTCTTCCTC 1 8995 ( 444) CTCCTATCATCCGTCACCACC 1 9017 ( 365) TTCCTCCGCCGACACCTCCAC 1 35297 ( 375) TACACCACCGCACCGCTCCTC 1 38073 ( 474) CACACCTCGCCTCCCTTTACC 1 269080 ( 389) TTCCTCTCTTGCCGCCCCGTC 1 6265 ( 403) TGACCCTTCACTCTCTCCAAC 1 262018 ( 151) CTTCTTTGATGACTCGTCAAC 1 34176 ( 403) CGTTGTCCGCCTCCCATCGAC 1 25725 ( 453) TACTCATGTCCTTACATCATC 1 25689 ( 13) GACGCCCCTCGTCTCGTCGTC 1 25604 ( 138) CACGTCAATTCTTTGCTCCTC 1 5236 ( 477) CATCACTCCTCGGCCATCACC 1 8559 ( 325) TAAAGCCTCTGTCTCCTCATC 1 32882 ( 263) CTCTGTCTATCTCTCACCAAA 1 269925 ( 350) CACAATCTCTGGCCCATCCAC 1 22441 ( 407) CACGCTTCCTCGCACTGCCAC 1 31819 ( 447) CCTCGCCCGCCATCCATCAAC 1 268746 ( 233) CGAACTTCTTCCCCGATCCAA 1 268412 ( 322) CGTCTGTATCGTCTGTCCATC 1 263350 ( 45) TACACCATTCGACCACCCATC 1 21422 ( 388) TTCACTTCTTCGCACGTCAAA 1 38662 ( 471) AGTACACCATCACCGTCCATC 1 269917 ( 368) TTCATCAATTCTCTCCCCGTA 1 34021 ( 214) TGTGGCTCTTTCTTCTTCCAC 1 25120 ( 442) CTCGTCCTCGCCGCCATCATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 54240 bayes= 10.4934 E= 2.9e-012 -400 144 -284 28 58 -380 -25 55 -142 128 -1255 35 -20 115 -67 -139 -142 115 -84 -6 -68 124 -284 -6 -54 59 -1255 84 -142 152 -151 -80 0 19 -151 55 -300 105 -284 78 -1255 155 -14 -139 17 -11 -103 49 -1255 175 -225 -65 -83 65 -383 84 -300 159 16 -1255 52 0 -225 35 -1255 110 -383 89 -1255 205 -1255 -297 100 44 -67 -1255 58 -181 -1255 103 -142 195 -1255 -1255 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 60 E= 2.9e-012 0.016667 0.633333 0.033333 0.316667 0.400000 0.016667 0.200000 0.383333 0.100000 0.566667 0.000000 0.333333 0.233333 0.516667 0.150000 0.100000 0.100000 0.516667 0.133333 0.250000 0.166667 0.550000 0.033333 0.250000 0.183333 0.350000 0.000000 0.466667 0.100000 0.666667 0.083333 0.150000 0.266667 0.266667 0.083333 0.383333 0.033333 0.483333 0.033333 0.450000 0.000000 0.683333 0.216667 0.100000 0.300000 0.216667 0.116667 0.366667 0.000000 0.783333 0.050000 0.166667 0.150000 0.366667 0.016667 0.466667 0.033333 0.700000 0.266667 0.000000 0.383333 0.233333 0.050000 0.333333 0.000000 0.500000 0.016667 0.483333 0.000000 0.966667 0.000000 0.033333 0.533333 0.316667 0.150000 0.000000 0.400000 0.066667 0.000000 0.533333 0.100000 0.900000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [CT][ATG][CT][CA][CT][CT][TC]C[TAC][CT][CG][TAC]C[TC][CG][ATC][CT]C[AC][TA]C -------------------------------------------------------------------------------- Time 257.70 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 11147 1.03e-02 39_[+2(1.34e-06)]_440 11508 3.84e-03 126_[+2(8.38e-05)]_49_\ [+2(2.80e-07)]_283 12259 6.40e-07 86_[+2(1.70e-05)]_39_[+2(9.25e-07)]_\ 193_[+1(1.40e-05)]_10_[+3(2.10e-06)]_88 12821 8.03e-04 344_[+2(1.19e-06)]_135 12971 1.86e-04 372_[+3(7.85e-06)]_4_[+1(4.11e-06)]_\ [+1(5.86e-05)]_61 12982 7.82e-01 500 1357 6.30e-11 17_[+2(5.29e-08)]_99_[+2(9.74e-05)]_\ 285_[+3(2.00e-08)]_3_[+1(1.14e-06)]_12 1374 1.18e-03 243_[+2(2.11e-07)]_32_\ [+2(8.38e-05)]_183 14890 2.37e-02 466_[+1(1.56e-05)]_13 16287 1.82e-03 26_[+2(1.87e-05)]_96_[+3(8.68e-06)]_\ 336 17492 1.21e-03 79_[+2(2.24e-05)]_374_\ [+1(2.56e-05)]_5 19301 3.62e-05 202_[+2(1.70e-05)]_24_\ [+3(7.85e-06)]_4_[+1(1.91e-05)]_207 20734 2.63e-09 70_[+2(4.20e-06)]_290_\ [+1(2.22e-06)]_16_[+3(7.21e-09)]_14_[+3(1.87e-05)]_26 20960 3.90e-03 142_[+2(1.05e-06)]_182_\ [+2(7.19e-05)]_134 2128 2.57e-04 192_[+2(4.67e-06)]_265_\ [+1(4.49e-05)]_1 21422 3.84e-03 276_[+2(9.04e-05)]_40_\ [+2(1.41e-05)]_29_[+3(5.67e-05)]_92 21462 9.66e-04 93_[+1(1.72e-05)]_340_\ [+3(6.38e-06)]_25 2157 2.41e-02 404_[+1(7.57e-05)]_75 21698 3.66e-03 432_[+3(1.65e-06)]_47 21802 7.89e-08 116_[+2(4.49e-08)]_313_\ [+1(6.59e-08)]_29 21959 1.87e-07 204_[+2(9.99e-08)]_198_\ [+3(3.33e-06)]_23_[+3(8.68e-06)]_12 22356 3.60e-03 432_[+1(1.56e-05)]_47 22417 4.59e-05 453_[+3(2.65e-06)]_3_[+1(9.95e-07)]_\ 2 22441 1.01e-04 48_[+2(3.77e-05)]_156_\ [+2(2.67e-05)]_160_[+3(3.77e-05)]_31_[+1(8.20e-06)]_21 22482 2.48e-02 82_[+2(1.51e-06)]_397 22499 1.41e-05 126_[+2(4.83e-05)]_7_[+2(2.24e-05)]_\ 212_[+1(3.56e-07)]_92 22847 6.30e-03 243_[+2(1.41e-05)]_236 22965 3.04e-06 144_[+3(6.38e-06)]_73_\ [+1(5.36e-05)]_2_[+2(1.91e-06)]_155_[+1(1.26e-05)]_42 23061 1.49e-02 416_[+1(2.82e-05)]_63 23105 4.10e-03 81_[+1(4.63e-06)]_398 23336 5.32e-05 317_[+2(1.51e-06)]_125_\ [+1(5.21e-06)]_16 23490 1.98e-03 334_[+2(7.77e-05)]_36_\ [+1(2.52e-06)]_88 23513 1.10e-01 161_[+1(6.96e-05)]_318 23812 2.12e-03 451_[+3(2.36e-06)]_28 24015 2.63e-03 77_[+2(4.85e-07)]_402 24314 5.06e-04 122_[+1(1.71e-06)]_146_\ [+2(1.55e-05)]_190 24323 1.73e-05 344_[+2(6.31e-07)]_102_\ [+1(9.95e-07)]_12 24332 4.90e-03 439_[+1(5.61e-07)]_40 24429 3.33e-01 500 24439 5.98e-06 277_[+2(3.02e-06)]_116_\ [+3(1.46e-06)]_37_[+1(7.57e-05)]_7 24445 3.57e-04 79_[+2(1.05e-06)]_318_\ [+1(2.56e-05)]_61 24907 2.36e-03 42_[+2(9.04e-05)]_332_\ [+1(7.34e-06)]_84 25120 1.65e-05 30_[+2(7.77e-05)]_162_\ [+2(9.59e-06)]_207_[+3(9.66e-05)]_17_[+1(1.14e-06)] 25365 2.07e-07 32_[+2(2.24e-05)]_343_\ [+3(3.73e-06)]_26_[+1(9.45e-08)]_36 25436 4.66e-04 347_[+3(8.80e-07)]_8_[+1(5.86e-05)]_\ 103 25604 2.29e-07 137_[+3(3.19e-05)]_205_\ [+2(4.20e-06)]_90_[+1(6.59e-08)]_5 25689 2.98e-04 12_[+3(3.19e-05)]_42_[+1(9.71e-05)]_\ 207_[+2(9.04e-05)]_55_[+2(9.59e-06)]_100 2569 3.18e-01 500 25725 1.67e-03 206_[+2(9.74e-05)]_84_\ [+2(8.68e-06)]_120_[+3(3.19e-05)]_27 260748 3.97e-05 407_[+3(4.64e-06)]_10_\ [+3(2.92e-07)]_41 261145 3.67e-04 311_[+1(1.56e-05)]_10_\ [+3(1.14e-06)]_59_[+1(2.32e-05)]_26_[+1(3.41e-05)]_10 261746 1.40e-06 247_[+2(1.57e-07)]_36_\ [+2(9.04e-05)]_112_[+1(5.85e-06)]_42 261910 4.07e-03 345_[+2(3.38e-06)]_134 262018 8.83e-07 119_[+2(8.38e-05)]_10_\ [+3(2.68e-05)]_101_[+2(2.80e-07)]_11_[+2(2.92e-05)]_27_[+2(2.04e-05)]_106_\ [+1(5.21e-06)] 262325 2.63e-02 430_[+2(4.83e-05)]_49 262731 2.34e-05 228_[+2(5.68e-05)]_61_\ [+2(5.77e-06)]_148_[+2(4.08e-09)] 263046 4.65e-04 156_[+2(9.59e-06)]_208_\ [+1(1.02e-05)]_94 263350 8.25e-05 44_[+3(5.67e-05)]_116_\ [+1(6.39e-05)]_1_[+1(6.59e-08)]_276 263644 2.91e-06 427_[+3(5.98e-08)]_8_[+1(7.34e-06)]_\ 23 264090 4.58e-01 500 264632 2.38e-03 381_[+1(1.71e-06)]_98 268327 3.84e-03 258_[+2(1.19e-06)]_221 268412 4.01e-02 321_[+3(4.45e-05)]_158 268455 8.29e-01 500 268746 5.63e-03 232_[+3(4.10e-05)]_208_\ [+1(2.11e-05)]_18 268812 8.52e-01 500 268880 3.33e-06 349_[+2(7.10e-06)]_81_\ [+3(2.36e-06)]_6_[+1(1.02e-05)]_1 269034 2.85e-01 500 269080 1.04e-04 231_[+2(2.67e-05)]_136_\ [+3(1.87e-05)]_60_[+1(1.72e-05)]_10 269917 7.59e-03 33_[+1(1.40e-05)]_313_\ [+3(6.13e-05)]_112 269925 1.59e-02 349_[+3(3.77e-05)]_82_\ [+1(4.91e-05)]_27 270120 2.05e-06 13_[+3(1.00e-06)]_20_[+1(1.26e-05)]_\ 247_[+2(7.85e-06)]_157 30980 2.07e-03 401_[+2(1.06e-05)]_55_\ [+1(1.72e-05)]_2 31516 2.32e-05 17_[+3(1.87e-05)]_269_\ [+1(6.39e-05)]_80_[+1(1.31e-06)]_16_[+3(7.72e-07)]_34 31819 4.13e-07 176_[+2(3.22e-07)]_242_\ [+3(2.68e-05)]_19_[+1(1.95e-06)] 32158 9.93e-03 111_[+1(6.55e-06)]_312_\ [+1(1.02e-05)]_35 32273 1.37e-01 226_[+1(6.96e-05)]_253 32395 1.31e-05 190_[+1(1.13e-07)]_17_\ [+3(9.60e-06)]_97_[+1(1.72e-05)]_133 32744 6.05e-04 296_[+3(1.46e-06)]_135_\ [+1(2.82e-05)]_6_[+3(2.68e-05)] 32882 1.22e-03 195_[+1(8.20e-06)]_13_\ [+1(1.72e-05)]_12_[+3(3.77e-05)]_[+1(3.65e-06)]_111_[+1(1.14e-05)]_64 3315 2.88e-06 86_[+2(2.45e-05)]_21_[+2(1.34e-06)]_\ 76_[+3(1.14e-06)]_132_[+1(9.71e-05)]_101 33476 3.00e-04 129_[+1(4.63e-06)]_350 34021 1.37e-04 86_[+2(7.77e-05)]_106_\ [+3(8.98e-05)]_244_[+1(2.52e-06)]_1 34176 1.78e-04 204_[+2(3.18e-05)]_177_\ [+3(2.92e-05)]_29_[+1(1.72e-05)]_27 34596 3.19e-04 21_[+2(1.28e-05)]_49_[+1(2.32e-05)]_\ 242_[+1(8.20e-06)]_125 34782 6.40e-07 81_[+3(1.42e-05)]_102_\ [+2(5.77e-06)]_149_[+3(1.46e-06)]_39_[+1(3.23e-06)]_45 35194 2.38e-02 459_[+2(1.70e-05)]_20 35297 5.02e-05 4_[+2(6.40e-06)]_349_[+3(1.42e-05)]_\ 19_[+1(4.10e-05)]_65 35584 5.64e-04 51_[+3(1.06e-05)]_265_\ [+2(7.10e-06)]_142 36597 4.47e-11 187_[+2(7.10e-06)]_77_\ [+1(4.70e-10)]_35_[+3(2.52e-07)]_138 36845 1.57e-04 118_[+1(1.40e-05)]_141_\ [+3(1.86e-06)]_11_[+3(7.85e-06)]_91_[+1(4.11e-06)]_21_[+1(3.74e-05)]_13 37705 3.39e-03 169_[+2(5.20e-06)]_102_\ [+2(1.70e-05)]_163_[+1(5.86e-05)]_3 38073 3.93e-07 52_[+2(3.70e-07)]_103_\ [+2(8.68e-06)]_2_[+2(4.45e-05)]_225_[+1(2.52e-06)]_7_[+3(1.71e-05)]_6 38136 1.42e-04 147_[+2(1.17e-05)]_64_\ [+2(1.70e-05)]_198_[+1(7.50e-07)]_28 3858 1.74e-05 212_[+2(1.32e-08)]_231_\ [+1(4.91e-05)]_15 38662 2.24e-04 340_[+1(2.52e-06)]_113_\ [+1(2.56e-05)]_5 38757 4.47e-11 187_[+2(7.10e-06)]_77_\ [+1(4.70e-10)]_35_[+3(2.52e-07)]_138 39812 9.37e-03 164_[+1(4.11e-06)]_315 4038 5.50e-03 412_[+2(1.55e-05)]_67 40884 1.02e-06 299_[+1(1.14e-06)]_46_\ [+3(1.16e-07)]_113 5236 1.44e-04 146_[+2(3.18e-05)]_119_\ [+1(1.14e-05)]_169_[+3(3.47e-05)]_3 5666 1.28e-01 39_[+1(3.10e-05)]_440 5794 8.09e-06 202_[+2(6.65e-05)]_160_\ [+2(2.67e-05)]_29_[+3(2.97e-06)]_3_[+1(5.85e-06)]_22 6012 8.91e-07 61_[+2(9.04e-05)]_381_\ [+1(1.88e-07)]_16 6265 8.42e-03 402_[+3(2.45e-05)]_77 7838 1.10e-05 382_[+1(1.31e-06)]_[+3(1.46e-06)]_\ 76 8541 2.82e-02 89_[+1(8.24e-05)]_390 8559 9.03e-05 100_[+2(1.70e-05)]_203_\ [+3(3.77e-05)]_113_[+1(1.14e-05)]_21 8995 2.25e-04 443_[+3(1.17e-05)]_8_[+1(5.21e-06)]_\ 7 9017 9.75e-05 231_[+2(2.67e-05)]_112_\ [+3(1.42e-05)]_68_[+1(2.11e-05)]_26 9118 4.20e-05 133_[+2(7.18e-07)]_23_\ [+2(6.65e-05)]_258_[+3(2.36e-06)]_23 9576 1.35e-05 21_[+3(1.14e-06)]_132_\ [+1(6.55e-06)]_305 9608 3.04e-03 238_[+3(9.60e-06)]_28_\ [+1(4.91e-05)]_192 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************