******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/239/239.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10140 1.0000 500 1704 1.0000 500 20601 1.0000 500 22186 1.0000 500 22886 1.0000 500 23102 1.0000 500 24201 1.0000 500 2426 1.0000 500 24990 1.0000 500 25011 1.0000 500 25360 1.0000 500 262298 1.0000 500 262540 1.0000 500 269662 1.0000 500 35049 1.0000 500 38370 1.0000 500 3959 1.0000 500 39946 1.0000 500 5223 1.0000 500 6389 1.0000 500 7569 1.0000 500 7929 1.0000 500 8376 1.0000 500 9705 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/239/239.seqs.fa -oc motifs/239 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 24 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 12000 N= 24 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.265 C 0.230 G 0.252 T 0.252 Background letter frequencies (from dataset with add-one prior applied): A 0.265 C 0.230 G 0.252 T 0.252 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 12 sites = 23 llr = 214 E-value = 1.9e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :8:3646:5844 pos.-specific C a15736:a3:65 probability G ::::::::2::: matrix T ::5:1:4::2:: bits 2.1 * 1.9 * * 1.7 * * 1.5 * * Relative 1.3 * * * * Entropy 1.1 * ** *** ** (13.4 bits) 0.8 **** *** *** 0.6 ******** *** 0.4 ************ 0.2 ************ 0.0 ------------ Multilevel CACCACACAACC consensus TACAT CTAA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 10140 488 2.89e-07 AGCCACACCG CACCACACAAAC T 22886 374 9.73e-07 TTTCTGTGTC CACCACACAAAA TACCGCAGAG 1704 423 1.25e-06 GCCTCCTTCA CACCAAACAAAC CAACCAGCGA 6389 434 1.98e-06 ACTAGACACC CATCACACCACA GAGCCAACAC 7929 360 3.51e-06 AGACATCAAT CATCAATCAACA CGATCGTCAT 25360 272 4.06e-06 CATTGAACAG CATCAAACAAAA TGCCAAAGTG 7569 394 4.74e-06 ATCGCCGACC CATCACTCCAAC TCGTTCAGCA 269662 411 4.74e-06 GATCACAAAT CATCCAACAACA CCGACACCGA 23102 442 8.02e-06 CTACCACGTC CACCCATCCACC GCTCACGCGC 25011 450 1.28e-05 CTGTCACAAA CACACCACCACC CCCATTGACA 262540 448 1.56e-05 CCTCAAACAT CATCCCTCCAAA GATATCCACC 2426 22 2.10e-05 ATCACACACT CATCACTCCTCA TGAATAGCTG 38370 360 2.31e-05 GGAGAGGGTT CCCAACACAACC AACAACGAGG 39946 475 2.48e-05 GCTGCACAAC CACAAAACGAAC CACAAAAGCT 24990 370 2.96e-05 TTACGATGCA CATAACACATAC ACACGACATG 3959 339 4.68e-05 CTCCCCCCGT CCTCTCACAACC TTGGACCTCC 8376 18 4.97e-05 TCTCCCTGCT CTCCAAACAAAC ATCCAACAGC 20601 116 6.17e-05 AGTGGCACTA CATCTATCGACA GTTGAAATAT 35049 464 7.00e-05 TCCCTCGCAC CACACCTCGTCC CTCTCTCGTC 22186 381 9.00e-05 CGACAGACGA CGCCAAACGAAC GGATGCTGTG 24201 225 1.08e-04 AAGATTTAGA TACCCATCAACA TCTTTGGTTG 5223 472 1.20e-04 ACACATTTCA CCCACCACATCA GCCTACCGCT 262298 209 1.33e-04 TAATCGTAGA CATCACTCGTCT TGATGTGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10140 2.9e-07 487_[+1]_1 22886 9.7e-07 373_[+1]_115 1704 1.2e-06 422_[+1]_66 6389 2e-06 433_[+1]_55 7929 3.5e-06 359_[+1]_129 25360 4.1e-06 271_[+1]_217 7569 4.7e-06 393_[+1]_95 269662 4.7e-06 410_[+1]_78 23102 8e-06 441_[+1]_47 25011 1.3e-05 449_[+1]_39 262540 1.6e-05 447_[+1]_41 2426 2.1e-05 21_[+1]_467 38370 2.3e-05 359_[+1]_129 39946 2.5e-05 474_[+1]_14 24990 3e-05 369_[+1]_119 3959 4.7e-05 338_[+1]_150 8376 5e-05 17_[+1]_471 20601 6.2e-05 115_[+1]_373 35049 7e-05 463_[+1]_25 22186 9e-05 380_[+1]_108 24201 0.00011 224_[+1]_264 5223 0.00012 471_[+1]_17 262298 0.00013 208_[+1]_280 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=12 seqs=23 10140 ( 488) CACCACACAAAC 1 22886 ( 374) CACCACACAAAA 1 1704 ( 423) CACCAAACAAAC 1 6389 ( 434) CATCACACCACA 1 7929 ( 360) CATCAATCAACA 1 25360 ( 272) CATCAAACAAAA 1 7569 ( 394) CATCACTCCAAC 1 269662 ( 411) CATCCAACAACA 1 23102 ( 442) CACCCATCCACC 1 25011 ( 450) CACACCACCACC 1 262540 ( 448) CATCCCTCCAAA 1 2426 ( 22) CATCACTCCTCA 1 38370 ( 360) CCCAACACAACC 1 39946 ( 475) CACAAAACGAAC 1 24990 ( 370) CATAACACATAC 1 3959 ( 339) CCTCTCACAACC 1 8376 ( 18) CTCCAAACAAAC 1 20601 ( 116) CATCTATCGACA 1 35049 ( 464) CACACCTCGTCC 1 22186 ( 381) CGCCAAACGAAC 1 24201 ( 225) TACCCATCAACA 1 5223 ( 472) CCCACCACATCA 1 262298 ( 209) CATCACTCGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 11736 bayes= 10.0579 E= 1.9e-005 -1117 205 -1117 -253 156 -82 -253 -253 -1117 118 -1117 92 -2 168 -1117 -1117 120 40 -1117 -153 71 129 -1117 -1117 120 -1117 -1117 63 -1117 212 -1117 -1117 98 18 -21 -1117 156 -1117 -1117 -21 71 129 -1117 -1117 71 118 -1117 -253 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 23 E= 1.9e-005 0.000000 0.956522 0.000000 0.043478 0.782609 0.130435 0.043478 0.043478 0.000000 0.521739 0.000000 0.478261 0.260870 0.739130 0.000000 0.000000 0.608696 0.304348 0.000000 0.086957 0.434783 0.565217 0.000000 0.000000 0.608696 0.000000 0.000000 0.391304 0.000000 1.000000 0.000000 0.000000 0.521739 0.260870 0.217391 0.000000 0.782609 0.000000 0.000000 0.217391 0.434783 0.565217 0.000000 0.000000 0.434783 0.521739 0.000000 0.043478 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- CA[CT][CA][AC][CA][AT]C[ACG][AT][CA][CA] -------------------------------------------------------------------------------- Time 5.14 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 21 llr = 237 E-value = 1.0e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 14:232:::::1114::1:23 pos.-specific C 1121131:::1:11::::::: probability G 8:12422:7:81162551281 matrix T :47422793a:87235478:6 bits 2.1 1.9 1.7 * 1.5 * * Relative 1.3 * * * Entropy 1.1 * ***** ** (16.3 bits) 0.8 * * ****** ***** 0.6 * * ******* ****** 0.4 * * ******** ****** 0.2 ***** *************** 0.0 --------------------- Multilevel GTTTGCTTGTGTTGAGGTTGT consensus A AAA T TTT G A sequence G G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 6389 59 1.89e-10 ATGTCATGGT GTTGAGTTGTGTTGTTGTTGT GGAGAACGAG 35049 374 2.20e-08 CGTCGAAGAA GATTTATTGTGTTGTGATTGT CAAAATGTTA 9705 157 3.75e-08 GATGAATAGC GATCGTTTTTGTTGTTGTTGG TGGTGGTGCA 8376 275 3.75e-08 GTGAGGGATG GTTTGCGGGTGTTGATTTTGT GGGAGGGTGC 20601 231 7.11e-08 ATAAACGAAC GTCTGCTTTTGTTTGTGTTGA ATGAGATGGG 2426 276 3.58e-07 CAGCGATGCC GTTTGTTTGTTTTTATGTGGA GGGCGGAAGC 39946 347 4.92e-07 TTTGACCATT GTTTGATTGTGTGGTGGGTAA CAGCAAGCTC 10140 49 2.53e-06 TTGTTGGTGT GTTGACTTGAGTTGCTTGTGT GGCGATGTGT 262540 273 3.02e-06 TTCAGCAAAG AATGTGTTGTGTTGGGGTGAA GGTCGATAAC 5223 316 4.25e-06 GCAAGTGCCC AATGACTTTTCATGTGTTTGT TGCTGCAGTG 25360 128 4.25e-06 ATGATATGCC GACAAGTTTTGTTGAAGATGA TGAGCTGAGA 25011 195 4.25e-06 GCAAATTCCT GTCATTGTGTGAAGATGTTGT ATCTCTTCAA 3959 234 5.02e-06 GGACAAAATT GCTATTTTTTGTCCATTGTGT CATTCATTTT 22886 194 5.02e-06 GTGGTCGAGT GGTGGACTGTGTTGGGTTGAT AGGTAGATGT 1704 257 5.02e-06 AGGACCTGGC GATTCTTCTTGGTGATTTGGT TCAAACATGT 23102 2 8.80e-06 G GTGTGAGTGTGTAAAGTTTAT GGGAGTGAGA 24990 199 9.51e-06 GAGTGTTTTA GCTAAATTGTGTCTTGGTTTG ACATCCCCTA 24201 114 1.03e-05 CGTTGTATTT CATCGGCTGTGTTCGTTTTGA AACACCAGTG 22186 242 1.39e-05 CATGGCTGTG CAGTACTTGTGGTGTGTAGGT GGAGAGATGA 269662 167 1.85e-05 TTTAAAGAAA GCTTGGTTGTCGGAAGGATGT CCGTCGTGTC 7929 142 1.99e-05 AGTAAATTGG GTCACCGTGTCTCTAGGTTGG TCCAAAAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 6389 1.9e-10 58_[+2]_421 35049 2.2e-08 373_[+2]_106 9705 3.8e-08 156_[+2]_323 8376 3.8e-08 274_[+2]_205 20601 7.1e-08 230_[+2]_249 2426 3.6e-07 275_[+2]_204 39946 4.9e-07 346_[+2]_133 10140 2.5e-06 48_[+2]_431 262540 3e-06 272_[+2]_207 5223 4.3e-06 315_[+2]_164 25360 4.3e-06 127_[+2]_352 25011 4.3e-06 194_[+2]_285 3959 5e-06 233_[+2]_246 22886 5e-06 193_[+2]_286 1704 5e-06 256_[+2]_223 23102 8.8e-06 1_[+2]_478 24990 9.5e-06 198_[+2]_281 24201 1e-05 113_[+2]_366 22186 1.4e-05 241_[+2]_238 269662 1.8e-05 166_[+2]_313 7929 2e-05 141_[+2]_338 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=21 6389 ( 59) GTTGAGTTGTGTTGTTGTTGT 1 35049 ( 374) GATTTATTGTGTTGTGATTGT 1 9705 ( 157) GATCGTTTTTGTTGTTGTTGG 1 8376 ( 275) GTTTGCGGGTGTTGATTTTGT 1 20601 ( 231) GTCTGCTTTTGTTTGTGTTGA 1 2426 ( 276) GTTTGTTTGTTTTTATGTGGA 1 39946 ( 347) GTTTGATTGTGTGGTGGGTAA 1 10140 ( 49) GTTGACTTGAGTTGCTTGTGT 1 262540 ( 273) AATGTGTTGTGTTGGGGTGAA 1 5223 ( 316) AATGACTTTTCATGTGTTTGT 1 25360 ( 128) GACAAGTTTTGTTGAAGATGA 1 25011 ( 195) GTCATTGTGTGAAGATGTTGT 1 3959 ( 234) GCTATTTTTTGTCCATTGTGT 1 22886 ( 194) GGTGGACTGTGTTGGGTTGAT 1 1704 ( 257) GATTCTTCTTGGTGATTTGGT 1 23102 ( 2) GTGTGAGTGTGTAAAGTTTAT 1 24990 ( 199) GCTAAATTGTGTCTTGGTTTG 1 24201 ( 114) CATCGGCTGTGTTCGTTTTGA 1 22186 ( 242) CAGTACTTGTGGTGTGTAGGT 1 269662 ( 167) GCTTGGTTGTCGGAAGGATGT 1 7929 ( 142) GTCACCGTGTCTCTAGGTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 11520 bayes= 9.40226 E= 1.0e-003 -148 -127 168 -1104 52 -69 -240 77 -1104 -27 -140 150 -16 -127 -8 77 11 -127 76 -40 -16 31 -8 -8 -1104 -127 -41 150 -1104 -227 -240 184 -1104 -1104 150 18 -248 -1104 -1104 192 -1104 -69 168 -240 -148 -1104 -82 160 -148 -69 -140 140 -148 -127 129 -40 69 -227 -41 40 -248 -1104 92 92 -248 -1104 105 77 -89 -1104 -82 150 -1104 -1104 -8 160 -48 -1104 159 -240 11 -1104 -82 118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 21 E= 1.0e-003 0.095238 0.095238 0.809524 0.000000 0.380952 0.142857 0.047619 0.428571 0.000000 0.190476 0.095238 0.714286 0.238095 0.095238 0.238095 0.428571 0.285714 0.095238 0.428571 0.190476 0.238095 0.285714 0.238095 0.238095 0.000000 0.095238 0.190476 0.714286 0.000000 0.047619 0.047619 0.904762 0.000000 0.000000 0.714286 0.285714 0.047619 0.000000 0.000000 0.952381 0.000000 0.142857 0.809524 0.047619 0.095238 0.000000 0.142857 0.761905 0.095238 0.142857 0.095238 0.666667 0.095238 0.095238 0.619048 0.190476 0.428571 0.047619 0.190476 0.333333 0.047619 0.000000 0.476190 0.476190 0.047619 0.000000 0.523810 0.428571 0.142857 0.000000 0.142857 0.714286 0.000000 0.000000 0.238095 0.761905 0.190476 0.000000 0.761905 0.047619 0.285714 0.000000 0.142857 0.571429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- G[TA]T[TAG][GA][CAGT]TT[GT]TGTTG[AT][GT][GT]T[TG]G[TA] -------------------------------------------------------------------------------- Time 10.16 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 15 sites = 10 llr = 133 E-value = 6.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :1::4:5:::::::: pos.-specific C a5266a17a:8a939 probability G ::5:::22:21::21 matrix T :434::21:81:15: bits 2.1 * * * * 1.9 * * * * 1.7 * * * ** * 1.5 * * * ** * Relative 1.3 * * ***** * Entropy 1.1 * *** ***** * (19.2 bits) 0.8 * *** ****** * 0.6 ** *** ******** 0.4 ****** ******** 0.2 *************** 0.0 --------------- Multilevel CCGCCCACCTCCCTC consensus TTTA GG G C sequence C T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- 7569 247 1.59e-08 AAGGTTCCCT CCTCCCTCCTCCCTC CTGGACCTCC 35049 445 8.85e-08 TGACAGAACG CCTTCCCCCTCCCTC GCACCACACC 1704 390 1.63e-07 ACTCAATTAC CTCCCCGCCTCCCGC CGACGACGGC 39946 412 2.04e-07 TTGACGCCCG CCGCCCGCCGCCCGC CCTACCTCTC 23102 329 2.89e-07 TTCCACCAAG CTGTCCACCTGCCCC TCCTGGCACT 7929 404 3.95e-07 TAAGAGTGAA CTGCACACCTCCTCC TCCTATCAAC 10140 341 5.91e-07 GCACTACTAA CCGCACACCGTCCTC CTCGTAGCCT 2426 470 6.33e-07 AAACGGTAAA CATCACAGCTCCCTC ACCCAGACAC 3959 321 6.72e-07 TTTTTACCAT CTCTCCTGCTCCCCC CGTCCTCTCA 8376 1 1.82e-06 . CCGTACATCTCCCTG CTCTCCAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 7569 1.6e-08 246_[+3]_239 35049 8.9e-08 444_[+3]_41 1704 1.6e-07 389_[+3]_96 39946 2e-07 411_[+3]_74 23102 2.9e-07 328_[+3]_157 7929 3.9e-07 403_[+3]_82 10140 5.9e-07 340_[+3]_145 2426 6.3e-07 469_[+3]_16 3959 6.7e-07 320_[+3]_165 8376 1.8e-06 [+3]_485 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=15 seqs=10 7569 ( 247) CCTCCCTCCTCCCTC 1 35049 ( 445) CCTTCCCCCTCCCTC 1 1704 ( 390) CTCCCCGCCTCCCGC 1 39946 ( 412) CCGCCCGCCGCCCGC 1 23102 ( 329) CTGTCCACCTGCCCC 1 7929 ( 404) CTGCACACCTCCTCC 1 10140 ( 341) CCGCACACCGTCCTC 1 2426 ( 470) CATCACAGCTCCCTC 1 3959 ( 321) CTCTCCTGCTCCCCC 1 8376 ( 1) CCGTACATCTCCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 11664 bayes= 11.1306 E= 6.0e-002 -997 212 -997 -997 -141 112 -997 67 -997 -20 99 25 -997 138 -997 67 59 138 -997 -997 -997 212 -997 -997 91 -120 -33 -33 -997 160 -33 -133 -997 212 -997 -997 -997 -997 -33 167 -997 179 -133 -133 -997 212 -997 -997 -997 196 -997 -133 -997 38 -33 99 -997 196 -133 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 10 E= 6.0e-002 0.000000 1.000000 0.000000 0.000000 0.100000 0.500000 0.000000 0.400000 0.000000 0.200000 0.500000 0.300000 0.000000 0.600000 0.000000 0.400000 0.400000 0.600000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.100000 0.200000 0.200000 0.000000 0.700000 0.200000 0.100000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.800000 0.100000 0.100000 0.000000 1.000000 0.000000 0.000000 0.000000 0.900000 0.000000 0.100000 0.000000 0.300000 0.200000 0.500000 0.000000 0.900000 0.100000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- C[CT][GTC][CT][CA]C[AGT][CG]C[TG]CCC[TCG]C -------------------------------------------------------------------------------- Time 14.73 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10140 1.51e-08 48_[+2(2.53e-06)]_271_\ [+3(5.91e-07)]_132_[+1(2.89e-07)]_1 1704 3.33e-08 189_[+2(5.33e-05)]_46_\ [+2(5.02e-06)]_112_[+3(1.63e-07)]_18_[+1(1.25e-06)]_66 20601 1.11e-04 115_[+1(6.17e-05)]_103_\ [+2(7.11e-08)]_249 22186 8.16e-03 241_[+2(1.39e-05)]_118_\ [+1(9.00e-05)]_108 22886 9.76e-05 193_[+2(5.02e-06)]_159_\ [+1(9.73e-07)]_115 23102 5.06e-07 1_[+2(8.80e-06)]_306_[+3(2.89e-07)]_\ 98_[+1(8.02e-06)]_47 24201 7.30e-04 113_[+2(1.03e-05)]_147_\ [+3(7.59e-05)]_204 2426 1.35e-07 21_[+1(2.10e-05)]_242_\ [+2(3.58e-07)]_173_[+3(6.33e-07)]_16 24990 3.55e-03 198_[+2(9.51e-06)]_150_\ [+1(2.96e-05)]_119 25011 1.90e-04 194_[+2(4.25e-06)]_234_\ [+1(1.28e-05)]_39 25360 2.77e-04 127_[+2(4.25e-06)]_123_\ [+1(4.06e-06)]_217 262298 1.20e-01 500 262540 7.79e-04 272_[+2(3.02e-06)]_154_\ [+1(1.56e-05)]_10_[+1(7.99e-05)]_19 269662 7.00e-04 166_[+2(1.85e-05)]_223_\ [+1(4.74e-06)]_58_[+1(7.49e-05)]_8 35049 5.13e-09 373_[+2(2.20e-08)]_50_\ [+3(8.85e-08)]_4_[+1(7.00e-05)]_25 38370 1.63e-01 359_[+1(2.31e-05)]_129 3959 3.17e-06 233_[+2(5.02e-06)]_41_\ [+2(5.01e-05)]_4_[+3(6.72e-07)]_3_[+1(4.68e-05)]_150 39946 7.48e-08 346_[+2(4.92e-07)]_44_\ [+3(2.04e-07)]_48_[+1(2.48e-05)]_14 5223 9.68e-04 315_[+2(4.25e-06)]_164 6389 2.47e-08 58_[+2(1.89e-10)]_9_[+2(3.89e-05)]_\ 324_[+1(1.98e-06)]_55 7569 1.26e-06 246_[+3(1.59e-08)]_5_[+3(8.15e-05)]_\ 112_[+1(4.74e-06)]_61_[+3(2.91e-06)]_19 7929 6.62e-07 141_[+2(1.99e-05)]_197_\ [+1(3.51e-06)]_32_[+3(3.95e-07)]_82 8376 9.85e-08 [+3(1.82e-06)]_2_[+1(4.97e-05)]_245_\ [+2(3.75e-08)]_205 9705 2.87e-04 156_[+2(3.75e-08)]_240_\ [+2(6.79e-05)]_62 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************