******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/24/24.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10233 1.0000 500 10277 1.0000 500 1049 1.0000 500 1091 1.0000 500 11557 1.0000 500 11707 1.0000 500 11757 1.0000 500 1254 1.0000 500 1989 1.0000 500 22117 1.0000 500 22194 1.0000 500 22744 1.0000 500 2352 1.0000 500 2386 1.0000 500 2465 1.0000 500 24669 1.0000 500 25601 1.0000 500 261232 1.0000 500 261390 1.0000 500 261608 1.0000 500 262059 1.0000 500 263658 1.0000 500 264901 1.0000 500 26548 1.0000 500 268474 1.0000 500 268480 1.0000 500 270280 1.0000 500 270281 1.0000 500 270316 1.0000 500 270346 1.0000 500 270378 1.0000 500 2767 1.0000 500 283 1.0000 500 2846 1.0000 500 31012 1.0000 500 3166 1.0000 500 32431 1.0000 500 32964 1.0000 500 33231 1.0000 500 3326 1.0000 500 3327 1.0000 500 33566 1.0000 500 33891 1.0000 500 35022 1.0000 500 3506 1.0000 500 35871 1.0000 500 36091 1.0000 500 37294 1.0000 500 37534 1.0000 500 37615 1.0000 500 3974 1.0000 500 4370 1.0000 500 4376 1.0000 500 4531 1.0000 500 4718 1.0000 500 5063 1.0000 500 5077 1.0000 500 5188 1.0000 500 5240 1.0000 500 5415 1.0000 500 5632 1.0000 500 6139 1.0000 500 6736 1.0000 500 6802 1.0000 500 6905 1.0000 500 719 1.0000 500 7442 1.0000 500 8063 1.0000 500 8912 1.0000 500 9021 1.0000 500 9401 1.0000 500 bd1426 1.0000 500 ThpsCp056 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/24/24.seqs.fa -oc motifs/24 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 73 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 36500 N= 73 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.270 C 0.219 G 0.241 T 0.270 Background letter frequencies (from dataset with add-one prior applied): A 0.270 C 0.219 G 0.241 T 0.270 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 15 sites = 54 llr = 497 E-value = 2.8e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :24::14:::::131 pos.-specific C 5532742aa2a3635 probability G 32:1:::::::::21 matrix T 2137344::8:7222 bits 2.2 2.0 ** * 1.8 ** * 1.5 ** * Relative 1.3 * **** Entropy 1.1 * ***** (13.3 bits) 0.9 ** ***** 0.7 * ** ***** 0.4 * **** ****** * 0.2 ************* * 0.0 --------------- Multilevel CCATCTACCTCTCAC consensus GATCTCT C CTCT sequence GC C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- 270346 397 2.32e-07 GCTTCAACTG CAATCTTCCTCTCGC CATCATCACA 261232 396 2.32e-07 GCTTCAACTG CAATCTTCCTCTCGC CATCATCACA 22117 375 2.32e-07 TTTTGCCGGC TCTTCCTCCTCTCAC AACTATTCTG 268480 448 4.11e-07 TCAACCACGC CGCTCCACCTCCCAC TTCGGTACAC 4718 418 7.04e-07 GCGATCCTCG GCTTCAACCTCTCCC TCCTCCTGTC 37534 422 1.02e-06 GGGGTTGAAG CAATCTTCCTCTTCC CACGAAGGTA 3326 443 1.02e-06 GAAAGCCGAA GCCTTTCCCTCTCAC AATAAGAGCC 31012 401 1.22e-06 AGCAACTCAC TCATCTCCCTCTCTC TCTTCCATAC 262059 242 1.68e-06 TTCCTCGTGA CCTTCTTCCTCCAAC GACGACGTCA 263658 402 1.96e-06 GAGTTGCTTC GTCTCCACCTCTCGC ACCTGTTCAT 2352 429 2.29e-06 ACTACTTCCT CTTTCCACCTCTCAT CTCACACTTT 5063 462 2.67e-06 CTTCTTCATC CCCTTTACCTCTACC ACTACTACTC 37615 91 2.67e-06 GGCGTTGGTG CCCCCCCCCTCTCTT CTCTGCTGAG 8912 385 3.09e-06 AAGATACAGC CAATCAACCTCTCTC ACATCATCCA 2465 423 3.09e-06 CTGGTTGAAG GGATCTTCCCCTCCC CGCCACACTT 7442 463 4.06e-06 TGAAGAGCAT CGCCCTCCCTCCCAC AACACCCCCT 6905 113 4.06e-06 CTTTCCATTA CCAGCCTCCTCTCCA CCGAGATACA 270378 197 4.66e-06 CGCACCGCCC CCATCTGCCTCTTAC CTCGGTGTAG 261608 196 4.66e-06 CGCACCGCCC CCATCTGCCTCTTAC CTCGGTGTAG 6139 469 5.34e-06 TGGGCTGTCA CAACCAACCTCTCAC AAATCAACAG 22744 374 6.09e-06 GCTGCTTCAT GCTTTTTCCTCTTGC AAGCAAAATT 1254 255 8.84e-06 AGTAACAGTA CCTCTCACCTCTCCA TTGTCAACCA 5415 20 9.99e-06 CTGCCGAGTT GGATCCACCTCCTGC GATGGCAATA 5632 68 1.13e-05 TTTACCAAAA GGAGCCTCCTCTCTC GTAAGCAACT 36091 4 1.26e-05 ACC TCCTCTTCCTCTACT TCCTCCAATT 2767 290 1.41e-05 GGTATTTTCA CCTTTCACCTCCTAT CGTTTCTCTT 283 470 1.57e-05 CAACCCATCA CCATCACCCCCTCAA CCACCCATCG 4531 479 1.94e-05 ACCACACCCC TCTGCTTCCCCTCAC CTCCACC 2386 486 1.94e-05 CTGAATTTAA GCCCCCCCCCCTCGT 33891 360 3.18e-05 TCGTTCAAGA CCTCCCCCCTCCGAC ACCAACGAAA 33231 31 3.49e-05 GACGCCGTTG CCTTCTTCCCCCAGT TGTTGTACAT 264901 61 3.83e-05 GCTCTTGATC GCCTCCACCTCCACG CACGTCCATT 5240 227 4.19e-05 TTCTTGCACA GGACTTACCTCTCGT ACTACAACAC 270280 251 4.19e-05 TTCTTGCACA GGACTTACCTCTCGT ACTACAACAC 5077 276 4.56e-05 TTAGAATGGA CGTTCTCCCCCTCTG ACTCACAGGC 270281 275 4.56e-05 TTAGAATGGA CGTTCTCCCCCTCTG ACTCACAGGC 35871 57 4.95e-05 ACTAATAATT CCATCGTCCTCTACA TTGCATTTGA 2846 458 4.95e-05 AGAGGCTTTG CTCTCCTCCTCTGCT ACTTTCACAC 25601 272 5.39e-05 AAGATACCTT CAACCAACCTCCTGC CTCCGTTCCA 1091 356 5.85e-05 GAAAGATACA GCTTCAACCCCCACC TCTTTTGTAC 4376 400 6.87e-05 ACCGCCGCAA CACGTCACCTCCTCC AGCACCTCTC 261390 414 7.41e-05 TCACCTCCAC GTTTCCCCCTCTTCG GGTTGTGTCA 1049 365 7.41e-05 GCTATCGGTA GGCTTTACCCCCCAT TTCGAGCTTC 11557 447 7.99e-05 GAATAGATAT CAATCCATCTCTCAA GACATCGCAT 3974 295 8.61e-05 CTGTCTCCTG CCCTCCTCCTGCTGC AAAGTTTGTG 26548 322 8.61e-05 TCAAGAGCGC GATTTACCCTCTCAA GCAGTTTACT 22194 450 8.61e-05 GGTGTTGAAG CAATCTTCGTCTCCT TCCTTCCCTT 24669 422 1.22e-04 TGTCTGCCTG GGCTCCTCCTCGCAA AGAGGAGATC 6736 350 1.59e-04 TCTGGATTGG CTTGTCTCCTCTTGT CTTTCACTTA 3506 486 1.59e-04 TTGAAGCAAA TCTTTCCTCTCTCTC 32964 447 1.80e-04 CCTACAATCG TCACCGACCTCCTTC AACTCAAAAT 9021 456 1.91e-04 TTCATCTAAC TCCGTTTCCTCCATC TCTCGTTCTC 3327 336 2.28e-04 TATGGTCCAT TACTTTACCCCTTTT TTAAGCTTCT 6802 410 2.86e-04 CTGTTGCATA TTTCTCTCCCCTCAA GAACGCCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 270346 2.3e-07 396_[+1]_89 261232 2.3e-07 395_[+1]_90 22117 2.3e-07 374_[+1]_111 268480 4.1e-07 447_[+1]_38 4718 7e-07 417_[+1]_68 37534 1e-06 421_[+1]_64 3326 1e-06 442_[+1]_43 31012 1.2e-06 400_[+1]_85 262059 1.7e-06 241_[+1]_244 263658 2e-06 401_[+1]_84 2352 2.3e-06 428_[+1]_57 5063 2.7e-06 461_[+1]_24 37615 2.7e-06 90_[+1]_395 8912 3.1e-06 384_[+1]_101 2465 3.1e-06 422_[+1]_63 7442 4.1e-06 462_[+1]_23 6905 4.1e-06 112_[+1]_373 270378 4.7e-06 196_[+1]_289 261608 4.7e-06 195_[+1]_290 6139 5.3e-06 468_[+1]_17 22744 6.1e-06 373_[+1]_112 1254 8.8e-06 254_[+1]_231 5415 1e-05 19_[+1]_466 5632 1.1e-05 67_[+1]_418 36091 1.3e-05 3_[+1]_482 2767 1.4e-05 289_[+1]_196 283 1.6e-05 469_[+1]_16 4531 1.9e-05 478_[+1]_7 2386 1.9e-05 485_[+1] 33891 3.2e-05 359_[+1]_126 33231 3.5e-05 30_[+1]_455 264901 3.8e-05 60_[+1]_425 5240 4.2e-05 226_[+1]_259 270280 4.2e-05 250_[+1]_235 5077 4.6e-05 275_[+1]_210 270281 4.6e-05 274_[+1]_211 35871 5e-05 56_[+1]_429 2846 5e-05 457_[+1]_28 25601 5.4e-05 271_[+1]_214 1091 5.9e-05 355_[+1]_130 4376 6.9e-05 399_[+1]_86 261390 7.4e-05 413_[+1]_72 1049 7.4e-05 364_[+1]_121 11557 8e-05 446_[+1]_39 3974 8.6e-05 294_[+1]_191 26548 8.6e-05 321_[+1]_164 22194 8.6e-05 449_[+1]_36 24669 0.00012 421_[+1]_64 6736 0.00016 349_[+1]_136 3506 0.00016 485_[+1] 32964 0.00018 446_[+1]_39 9021 0.00019 455_[+1]_30 3327 0.00023 335_[+1]_150 6802 0.00029 409_[+1]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=15 seqs=54 270346 ( 397) CAATCTTCCTCTCGC 1 261232 ( 396) CAATCTTCCTCTCGC 1 22117 ( 375) TCTTCCTCCTCTCAC 1 268480 ( 448) CGCTCCACCTCCCAC 1 4718 ( 418) GCTTCAACCTCTCCC 1 37534 ( 422) CAATCTTCCTCTTCC 1 3326 ( 443) GCCTTTCCCTCTCAC 1 31012 ( 401) TCATCTCCCTCTCTC 1 262059 ( 242) CCTTCTTCCTCCAAC 1 263658 ( 402) GTCTCCACCTCTCGC 1 2352 ( 429) CTTTCCACCTCTCAT 1 5063 ( 462) CCCTTTACCTCTACC 1 37615 ( 91) CCCCCCCCCTCTCTT 1 8912 ( 385) CAATCAACCTCTCTC 1 2465 ( 423) GGATCTTCCCCTCCC 1 7442 ( 463) CGCCCTCCCTCCCAC 1 6905 ( 113) CCAGCCTCCTCTCCA 1 270378 ( 197) CCATCTGCCTCTTAC 1 261608 ( 196) CCATCTGCCTCTTAC 1 6139 ( 469) CAACCAACCTCTCAC 1 22744 ( 374) GCTTTTTCCTCTTGC 1 1254 ( 255) CCTCTCACCTCTCCA 1 5415 ( 20) GGATCCACCTCCTGC 1 5632 ( 68) GGAGCCTCCTCTCTC 1 36091 ( 4) TCCTCTTCCTCTACT 1 2767 ( 290) CCTTTCACCTCCTAT 1 283 ( 470) CCATCACCCCCTCAA 1 4531 ( 479) TCTGCTTCCCCTCAC 1 2386 ( 486) GCCCCCCCCCCTCGT 1 33891 ( 360) CCTCCCCCCTCCGAC 1 33231 ( 31) CCTTCTTCCCCCAGT 1 264901 ( 61) GCCTCCACCTCCACG 1 5240 ( 227) GGACTTACCTCTCGT 1 270280 ( 251) GGACTTACCTCTCGT 1 5077 ( 276) CGTTCTCCCCCTCTG 1 270281 ( 275) CGTTCTCCCCCTCTG 1 35871 ( 57) CCATCGTCCTCTACA 1 2846 ( 458) CTCTCCTCCTCTGCT 1 25601 ( 272) CAACCAACCTCCTGC 1 1091 ( 356) GCTTCAACCCCCACC 1 4376 ( 400) CACGTCACCTCCTCC 1 261390 ( 414) GTTTCCCCCTCTTCG 1 1049 ( 365) GGCTTTACCCCCCAT 1 11557 ( 447) CAATCCATCTCTCAA 1 3974 ( 295) CCCTCCTCCTGCTGC 1 26548 ( 322) GATTTACCCTCTCAA 1 22194 ( 450) CAATCTTCGTCTCCT 1 24669 ( 422) GGCTCCTCCTCGCAA 1 6736 ( 350) CTTGTCTCCTCTTGT 1 3506 ( 486) TCTTTCCTCTCTCTC 1 32964 ( 447) TCACCGACCTCCTTC 1 9021 ( 456) TCCGTTTCCTCCATC 1 3327 ( 336) TACTTTACCCCTTTT 1 6802 ( 410) TTTCTCTCCCCTCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 35478 bayes= 11.3067 E= 2.8e-019 -1240 130 30 -69 -41 114 -24 -128 45 44 -1240 31 -1240 -10 -112 135 -1240 172 -1240 4 -106 90 -270 66 45 2 -270 46 -1240 214 -1240 -286 -1240 217 -370 -1240 -1240 -10 -1240 156 -1240 217 -370 -1240 -1240 34 -370 138 -87 139 -270 -16 30 24 -12 -54 -87 130 -170 -16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 54 E= 2.8e-019 0.000000 0.537037 0.296296 0.166667 0.203704 0.481481 0.203704 0.111111 0.370370 0.296296 0.000000 0.333333 0.000000 0.203704 0.111111 0.685185 0.000000 0.722222 0.000000 0.277778 0.129630 0.407407 0.037037 0.425926 0.370370 0.222222 0.037037 0.370370 0.000000 0.962963 0.000000 0.037037 0.000000 0.981481 0.018519 0.000000 0.000000 0.203704 0.000000 0.796296 0.000000 0.981481 0.018519 0.000000 0.000000 0.277778 0.018519 0.703704 0.148148 0.574074 0.037037 0.240741 0.333333 0.259259 0.222222 0.185185 0.148148 0.537037 0.074074 0.240741 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CG][CAG][ATC][TC][CT][TC][ATC]CC[TC]C[TC][CT][ACG][CT] -------------------------------------------------------------------------------- Time 39.33 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 68 llr = 606 E-value = 1.2e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 1:212:1:1:131:3242532 pos.-specific C 2:11:11:::::::11121:1 probability G 252364:94183:91427234 matrix T 6565358158:481633:244 bits 2.2 2.0 1.8 1.5 * * Relative 1.3 * * Entropy 1.1 * ** ** (12.9 bits) 0.9 ** ** ** * 0.7 * ******* ** * 0.4 ** ******* *** * * 0.2 *************** ***** 0.0 --------------------- Multilevel TTTTGTTGTTGTTGTGAGATT consensus CG GTG G G ATT TAG sequence A G GGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 270378 35 1.78e-10 GCGGTTCAAC TTTTGTTGTTGTTGTCAGATG TGTCTGTCTG 261608 34 1.78e-10 GCGGTTCAAC TTTTGTTGTTGTTGTCAGATG TGTCTGTCTG 10233 183 3.54e-08 TGGTTGATAC TTTGTTTGTTGTTGAGAGTTT AAAGGACGAC 1989 26 1.30e-07 GGCGGATAGA TGTTGGTGGTGGTGTTTGCGT TGGCTGGAGA 5240 278 4.12e-07 GATCCTCGAA TTGTTGCGTTGTTGTGTGATT GCTATGCACA 270280 302 4.12e-07 GATCCTCGAA TTGTTGCGTTGTTGTGTGATT GCTATGCACA 32964 88 6.51e-07 GTAATAGAGG AGTGGTTGGTGTTGTGTGGTT GCATCCGTCA 1091 255 6.51e-07 GGTGCACCAA GGAGGTTGGTGGTGTGGGTTG TGAGAAGGGA 5415 402 1.53e-06 GCAGACCGAT TGCGATTGTTGATGTTAGGAT GGCAACCGTT 7442 3 2.01e-06 GC TTGGACTGGTGTTGTTGGAAG AACTACGGCA 261390 31 2.29e-06 ACGATCGTCG CTTTTGTGTTGATGGAGGAGG CCGACGTGGT 6736 120 2.61e-06 TTCGGGAGGT TTTTGTTTTTGATGTACGAGA GTGGGAAGGA 2386 234 3.37e-06 GTTTGGCTAT CGACGTTGATGTTGTGAGAGA GTGGGAGAGA 24669 226 3.82e-06 TAATGCAGTA CTTCGTTGGTGTTGACGGTGT GATTTGGCAG 5077 84 4.32e-06 GGCAGCTGTG TTGTTGAGTTGATGACAGTTG CGGTTGGGAG 270281 83 4.32e-06 GGCAGCTGTG TTGTTGAGTTGATGACAGTTG CGGTTGGGAG 5632 341 4.88e-06 CATCGCGATC TTTGGTTGATGTTGAACGAAA GCAGACGAAA 5063 156 4.88e-06 TGGTTGGTAG TGTAGTAGTTGTTGTTAAGAA CAAGAAACAG 283 55 5.50e-06 GCGGCGGTCT TCATGGTGTTGGTGGTAGAGG TTGAATGTGT 264901 209 6.20e-06 TTTGCGTTGA GGTTGGCGTTGGTGGGTGGTG AGGAGCAGAG 36091 446 6.97e-06 TTCATTGTAT TGTATTTGTTGTTTATGGAGA TATAACATGA 270346 59 6.97e-06 ACAGATTCGG CGTTAGTGTTGGAGTTACGTG AAGATTGAGC 261232 58 6.97e-06 ACAGATTCGG CGTTAGTGTTGGAGTTACGTG AAGATTGAGC 3327 103 7.83e-06 GTGAGCGGTC TGCTGTTGGTGCTGATGGGGG CAAAGGCTGA 22194 225 7.83e-06 AGGTGCATGG TGTAGTTGTGAGTGTGTGTGG GAGGAGAGAT 1049 339 8.78e-06 CTTGACAATT TGGAGGTGGTGGTGTAGCTAT CGGTAGGCTT 33891 116 1.10e-05 ATGGTGTGTT CGTAGTAGTTGTTGAGAATAG ACTCAGCAGT 31012 56 1.23e-05 TATTGAAATG GGATTGTGTTGATGTGTAGGA GGGTGGAGAA 6139 72 1.37e-05 TCTGGCCTGG CTTGGTTGTAGTTGAAAGGAT GTGGCACGTT 4531 169 1.70e-05 GGGCACCATT GGTTTGATTTGTTGAGAGGTT TGTTGTTTGT 35022 315 2.09e-05 AATGATAAAA TGTAGTTTGGGGTGTCAGTGT GAATAACTAC 10277 194 2.09e-05 GATACACTCT CTTGGTTTTTGTTGTGGAAGC CGCCAGGGGG 270316 30 2.57e-05 CCTCGTTGTC CTTTTGAGGTGATGTTTCAAC TGCAAATGCC 268474 31 2.57e-05 CCTCGTTGTC CTTTTGAGGTGATGTTTCAAC TGCAAATGCC 263658 209 3.14e-05 CCGTTTTGAC TTTGGGCGTTGAGGTTCGATA AGCTGGAGAC 6802 8 3.46e-05 CAAGAAG TTGTGGAGGGGAAGAGAGAAG GGAGAGAGGC 3506 87 3.46e-05 AGAAAAGTTT GGTTGGTGGTGGAGTTTGCTC GCTGGATTTG 3326 5 3.46e-05 CATA TGTTGCTGGTTTTGACTCAGG ATATGTTCGT 268480 227 3.46e-05 TGCACGTCTT CATAATTGGTGTTGTGAGATA TCTAATACTT 719 97 3.81e-05 GTGAAGTGAA GGATGGTGGTGGGGTTAGCAT CAAACCATTG 37534 123 3.81e-05 TGCTCATGAT GTTTGCTGTTTGTGCGAGAGT CTCTAGATCT 8912 246 4.20e-05 ACGACCTTAC TGGAGCTGGTGTTTATCGATG GAGAGGTGTA 6905 347 4.20e-05 GGGCGTCATG TTGCATTTGTGATGTGCGATG TGCGGTGCCA 37615 331 4.61e-05 GTGACTGATA TTTTGGCGGTAGTGTACAAAG GATCACTTTC 1254 300 4.61e-05 GACATAGTAT TTTAACTGTTAATGTTTGATC ATTCAATGTG 11557 170 4.61e-05 ACGTGTCTCA GTTTGTTGAGGTTGAAGCAAG ATCTTTGACT 262059 200 5.07e-05 GTGGCCGTAT CTTTTTTTGTGATGTGTCCGT CACACATCTG 4376 159 5.56e-05 GCGTGTTAGG GGAGGGTGGTGGAGCGAGTAT CGTAGCCTTG 35871 73 6.67e-05 TCCTCTACAT TGCATTTGATGTTGAGAAGGT TCATTCCATT 2465 357 7.30e-05 AGGCGTTTGC TGTTTTCGTTGGATTTTCATT TGGATCTTTA 33231 85 7.97e-05 ATGGCAGGTT GGGCGGTGTGAATGTTGGAGT GACGGACTGC 2767 172 7.97e-05 ATAGTCATAT TGAGGGTGTGGAAGGGTGTTT GCATCGTTCC 11757 98 8.70e-05 CGGTAGTAGT TGATGCAGTGGATGTCAATGG TGAAACCGTT 2846 263 9.49e-05 TTGATACGGT TTCGATTTGTGTTGGTGGAAG ACGGGCTCCC 8063 390 1.22e-04 ACTATCAGGC TGATGGAGTGGGTGGCGGGAA AAGATCTGAG ThpsCp056 300 1.56e-04 GCATTATAGG TTATTTTGTTATTTAAAATTT TAATAAAAAT bd1426 288 1.56e-04 GCATTATAGG TTATTTTGTTATTTAAAATTT TAATAAAAAT 32431 96 1.56e-04 AAGCACTTGC TTTGGCTGGGCATGATGGAAA GAAGTGAGAA 11707 381 1.56e-04 GATAACAGAG TGGTGCTGATACTGTCAGTTA GAGTTCATTG 33566 311 1.69e-04 TTCATGGTCA AGCTGTTGGAAATGTTAGATT TGCAAATCCA 3166 246 1.69e-04 ACGACCATGT TTGCGTTGTTAGTTTGGAAGA AGGGACTGTT 4370 19 2.31e-04 GGGCTGATCA AGTGATTGGTGTTTCGTGAAA TGAGTTGTGT 25601 404 2.31e-04 CCCTAGTCGA CTTGGCTGGTTTGGTGACAAG TAGTGATATG 9401 235 2.49e-04 ATATGAATCG ATATTGTGATGGTGTATCGAA TACACTAGTA 9021 75 2.49e-04 TGCGATATCA TCAGTGTGTTGGTTTGGCGAT GAAATATGCA 2352 13 2.69e-04 AAGTGTCTTA TGTCATCTTTCATGTGAGATT TGGGACAAAG 37294 150 3.34e-04 CAGAAGTTCT CTTGTTTGAAGGAGAAAGAAG TTACGACGAC 22117 284 4.43e-04 TTTGTTTTCC GTTTATTGTTACTGCTAATTT GATCAACAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 270378 1.8e-10 34_[+2]_445 261608 1.8e-10 33_[+2]_446 10233 3.5e-08 182_[+2]_297 1989 1.3e-07 25_[+2]_454 5240 4.1e-07 277_[+2]_202 270280 4.1e-07 301_[+2]_178 32964 6.5e-07 87_[+2]_392 1091 6.5e-07 254_[+2]_225 5415 1.5e-06 401_[+2]_78 7442 2e-06 2_[+2]_477 261390 2.3e-06 30_[+2]_449 6736 2.6e-06 119_[+2]_360 2386 3.4e-06 233_[+2]_246 24669 3.8e-06 225_[+2]_254 5077 4.3e-06 83_[+2]_396 270281 4.3e-06 82_[+2]_397 5632 4.9e-06 340_[+2]_139 5063 4.9e-06 155_[+2]_324 283 5.5e-06 54_[+2]_425 264901 6.2e-06 208_[+2]_271 36091 7e-06 445_[+2]_34 270346 7e-06 58_[+2]_421 261232 7e-06 57_[+2]_422 3327 7.8e-06 102_[+2]_377 22194 7.8e-06 224_[+2]_255 1049 8.8e-06 338_[+2]_141 33891 1.1e-05 115_[+2]_364 31012 1.2e-05 55_[+2]_424 6139 1.4e-05 71_[+2]_408 4531 1.7e-05 168_[+2]_311 35022 2.1e-05 314_[+2]_165 10277 2.1e-05 193_[+2]_286 270316 2.6e-05 29_[+2]_450 268474 2.6e-05 30_[+2]_449 263658 3.1e-05 208_[+2]_271 6802 3.5e-05 7_[+2]_472 3506 3.5e-05 86_[+2]_393 3326 3.5e-05 4_[+2]_475 268480 3.5e-05 226_[+2]_253 719 3.8e-05 96_[+2]_383 37534 3.8e-05 122_[+2]_357 8912 4.2e-05 245_[+2]_234 6905 4.2e-05 346_[+2]_133 37615 4.6e-05 330_[+2]_149 1254 4.6e-05 299_[+2]_180 11557 4.6e-05 169_[+2]_310 262059 5.1e-05 199_[+2]_280 4376 5.6e-05 158_[+2]_321 35871 6.7e-05 72_[+2]_407 2465 7.3e-05 356_[+2]_123 33231 8e-05 84_[+2]_395 2767 8e-05 171_[+2]_308 11757 8.7e-05 97_[+2]_382 2846 9.5e-05 262_[+2]_217 8063 0.00012 389_[+2]_90 ThpsCp056 0.00016 299_[+2]_180 bd1426 0.00016 287_[+2]_192 32431 0.00016 95_[+2]_384 11707 0.00016 380_[+2]_99 33566 0.00017 310_[+2]_169 3166 0.00017 245_[+2]_234 4370 0.00023 18_[+2]_461 25601 0.00023 403_[+2]_76 9401 0.00025 234_[+2]_245 9021 0.00025 74_[+2]_405 2352 0.00027 12_[+2]_467 37294 0.00033 149_[+2]_330 22117 0.00044 283_[+2]_196 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=68 270378 ( 35) TTTTGTTGTTGTTGTCAGATG 1 261608 ( 34) TTTTGTTGTTGTTGTCAGATG 1 10233 ( 183) TTTGTTTGTTGTTGAGAGTTT 1 1989 ( 26) TGTTGGTGGTGGTGTTTGCGT 1 5240 ( 278) TTGTTGCGTTGTTGTGTGATT 1 270280 ( 302) TTGTTGCGTTGTTGTGTGATT 1 32964 ( 88) AGTGGTTGGTGTTGTGTGGTT 1 1091 ( 255) GGAGGTTGGTGGTGTGGGTTG 1 5415 ( 402) TGCGATTGTTGATGTTAGGAT 1 7442 ( 3) TTGGACTGGTGTTGTTGGAAG 1 261390 ( 31) CTTTTGTGTTGATGGAGGAGG 1 6736 ( 120) TTTTGTTTTTGATGTACGAGA 1 2386 ( 234) CGACGTTGATGTTGTGAGAGA 1 24669 ( 226) CTTCGTTGGTGTTGACGGTGT 1 5077 ( 84) TTGTTGAGTTGATGACAGTTG 1 270281 ( 83) TTGTTGAGTTGATGACAGTTG 1 5632 ( 341) TTTGGTTGATGTTGAACGAAA 1 5063 ( 156) TGTAGTAGTTGTTGTTAAGAA 1 283 ( 55) TCATGGTGTTGGTGGTAGAGG 1 264901 ( 209) GGTTGGCGTTGGTGGGTGGTG 1 36091 ( 446) TGTATTTGTTGTTTATGGAGA 1 270346 ( 59) CGTTAGTGTTGGAGTTACGTG 1 261232 ( 58) CGTTAGTGTTGGAGTTACGTG 1 3327 ( 103) TGCTGTTGGTGCTGATGGGGG 1 22194 ( 225) TGTAGTTGTGAGTGTGTGTGG 1 1049 ( 339) TGGAGGTGGTGGTGTAGCTAT 1 33891 ( 116) CGTAGTAGTTGTTGAGAATAG 1 31012 ( 56) GGATTGTGTTGATGTGTAGGA 1 6139 ( 72) CTTGGTTGTAGTTGAAAGGAT 1 4531 ( 169) GGTTTGATTTGTTGAGAGGTT 1 35022 ( 315) TGTAGTTTGGGGTGTCAGTGT 1 10277 ( 194) CTTGGTTTTTGTTGTGGAAGC 1 270316 ( 30) CTTTTGAGGTGATGTTTCAAC 1 268474 ( 31) CTTTTGAGGTGATGTTTCAAC 1 263658 ( 209) TTTGGGCGTTGAGGTTCGATA 1 6802 ( 8) TTGTGGAGGGGAAGAGAGAAG 1 3506 ( 87) GGTTGGTGGTGGAGTTTGCTC 1 3326 ( 5) TGTTGCTGGTTTTGACTCAGG 1 268480 ( 227) CATAATTGGTGTTGTGAGATA 1 719 ( 97) GGATGGTGGTGGGGTTAGCAT 1 37534 ( 123) GTTTGCTGTTTGTGCGAGAGT 1 8912 ( 246) TGGAGCTGGTGTTTATCGATG 1 6905 ( 347) TTGCATTTGTGATGTGCGATG 1 37615 ( 331) TTTTGGCGGTAGTGTACAAAG 1 1254 ( 300) TTTAACTGTTAATGTTTGATC 1 11557 ( 170) GTTTGTTGAGGTTGAAGCAAG 1 262059 ( 200) CTTTTTTTGTGATGTGTCCGT 1 4376 ( 159) GGAGGGTGGTGGAGCGAGTAT 1 35871 ( 73) TGCATTTGATGTTGAGAAGGT 1 2465 ( 357) TGTTTTCGTTGGATTTTCATT 1 33231 ( 85) GGGCGGTGTGAATGTTGGAGT 1 2767 ( 172) TGAGGGTGTGGAAGGGTGTTT 1 11757 ( 98) TGATGCAGTGGATGTCAATGG 1 2846 ( 263) TTCGATTTGTGTTGGTGGAAG 1 8063 ( 390) TGATGGAGTGGGTGGCGGGAA 1 ThpsCp056 ( 300) TTATTTTGTTATTTAAAATTT 1 bd1426 ( 288) TTATTTTGTTATTTAAAATTT 1 32431 ( 96) TTTGGCTGGGCATGATGGAAA 1 11707 ( 381) TGGTGCTGATACTGTCAGTTA 1 33566 ( 311) AGCTGTTGGAAATGTTAGATT 1 3166 ( 246) TTGCGTTGTTAGTTTGGAAGA 1 4370 ( 19) AGTGATTGGTGTTTCGTGAAA 1 25601 ( 404) CTTGGCTGGTTTGGTGACAAG 1 9401 ( 235) ATATTGTGATGGTGTATCGAA 1 9021 ( 75) TCAGTGTGTTGGTTTGGCGAT 1 2352 ( 13) TGTCATCTTTCATGTGAGATT 1 37294 ( 150) CTTGTTTGAAGGAGAAAGAAG 1 22117 ( 284) GTTTATTGTTACTGCTAATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 35040 bayes= 9.07612 E= 1.2e-020 -220 -9 -58 109 -420 -289 96 85 -50 -157 -45 105 -88 -131 5 93 -74 -1273 121 5 -1273 -72 66 85 -88 -109 -1273 148 -1273 -1273 187 -120 -139 -1273 61 97 -261 -1273 -87 161 -88 -289 169 -261 5 -231 29 50 -120 -1273 -245 164 -1273 -1273 187 -120 5 -189 -145 109 -74 -57 61 26 71 -131 -13 -11 -74 -31 145 -1273 89 -189 -23 -20 26 -1273 21 56 -39 -157 55 45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 68 E= 1.2e-020 0.058824 0.205882 0.161765 0.573529 0.014706 0.029412 0.470588 0.485294 0.191176 0.073529 0.176471 0.558824 0.147059 0.088235 0.250000 0.514706 0.161765 0.000000 0.558824 0.279412 0.000000 0.132353 0.382353 0.485294 0.147059 0.102941 0.000000 0.750000 0.000000 0.000000 0.882353 0.117647 0.102941 0.000000 0.367647 0.529412 0.044118 0.000000 0.132353 0.823529 0.147059 0.029412 0.779412 0.044118 0.279412 0.044118 0.294118 0.382353 0.117647 0.000000 0.044118 0.838235 0.000000 0.000000 0.882353 0.117647 0.279412 0.058824 0.088235 0.573529 0.161765 0.147059 0.367647 0.323529 0.441176 0.088235 0.220588 0.250000 0.161765 0.176471 0.661765 0.000000 0.500000 0.058824 0.205882 0.235294 0.323529 0.000000 0.279412 0.397059 0.205882 0.073529 0.352941 0.367647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [TC][TG]T[TG][GT][TG]TG[TG]TG[TGA]TG[TA][GT][ATG]G[ATG][TAG][TGA] -------------------------------------------------------------------------------- Time 77.78 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 16 sites = 32 llr = 355 E-value = 4.3e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A ::2338:18319:482 pos.-specific C 325722a:14::91:8 probability G 271:41:8:181:51: matrix T 522:1::112::::1: bits 2.2 * 2.0 * 1.8 * * 1.5 * ** Relative 1.3 ** *** * Entropy 1.1 * ** *** * (16.0 bits) 0.9 * * **** *** ** 0.7 * * **** ****** 0.4 ** * **** ****** 0.2 **************** 0.0 ---------------- Multilevel TGCCGACGACGACGAC consensus C AAA A A sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 33231 241 4.64e-09 AAGGACGAAG CGACGACGACGACGAC GACGACGACT 5077 131 8.50e-08 CATCGCTTCA CGCCCACGAGGACGAC CGTCAGTCTC 270316 264 8.50e-08 CGTCAACGTC TGCATACGACGACGAC ACTCTGAATA 270281 130 8.50e-08 CATCGCTTCA CGCCCACGAGGACGAC CGTCAGTCTC 268474 265 8.50e-08 CGTCAACGTC TGCATACGACGACGAC ACTCTGAATA 6736 429 1.68e-07 GACGTGTCGC TCCAGCCGACGACGAC CATGAAGCAA 719 330 3.16e-07 TGACTTCACG TGACGACGAAAACAAC TCACGTGACA 11757 452 5.06e-07 GCTCCACGTG TCCCGACGCTGACAAC TTGCGCTCAC 4531 400 5.71e-07 TACACTAGCC TGCCGACGTCGACGTC GGCTCCTTCC 5188 426 9.84e-07 TGTTGTTGTT CCTCCCCGAAGACGAC GCGACCAATC 33566 389 1.10e-06 TGGCGTCAGG GGGAGACGATGACAAC GTGGAGGATC 270378 476 1.10e-06 ACTTTTCTTT GGTCAACTACGACAAC ACCTCAAAC 261608 475 1.10e-06 ACTTTTCTTT GGTCAACTACGACAAC ACCTCAAACC 3326 211 1.83e-06 AAGTTCCCAA CGCAACCGACGACGGC GGCCCGTCGT 8912 122 2.02e-06 TGCTGGATGA TGCCGACGTCGACGAG GATGCGATGC 2767 411 2.02e-06 CAGATGCCGA TGCCCACGAAGGCGTC TGCGGAAATC 270346 266 2.23e-06 AATTGCTTTG CGAACGCGAAGACAAC AGACAGCCAA 261232 265 2.23e-06 AATTGCTTTG CGAACGCGAAGACAAC AGACAGCCAA 25601 155 2.23e-06 GTAGTAAGTT GTTAAACGAAGACAAC TCTAATAAAA 1091 418 4.69e-06 CTGGCAACTT TGCCAACTACAACCAC TGCCAACTGA 10233 418 5.12e-06 GTTGACTCTC TTTCAACGACGACACC CACCAAGTCA 37294 196 7.22e-06 AGATGTGCAA TGACAACGACGATGAA AGAAAGTTGA 7442 53 7.86e-06 CTGGCTGCTA TTGCGACGATGACGGC CGCGATGATG 24669 326 8.53e-06 AGAAGCATCA TGCCGACGACGAGCAA CATCATCGTG 6905 450 1.18e-05 AAAGATCCAA CCACGACGAAGGCAAA CTCAACACAT 33891 15 1.18e-05 CAGTGTGAAT TCTCGACGAACACCAC CGTTGACGAT 31012 479 1.38e-05 GCCCTGGCGA CGGCCCCGATGGCAAC TACCCC 4718 482 1.49e-05 GGCAACAACA TCCCAACAATAACAAC AAC 261390 435 1.49e-05 TTCGGGTTGT GTCAGACGCAGACGTC CCTCTCGCAT 263658 376 2.87e-05 CACGTTTCAC TTCAACCACCGACGAC GAGTTGCTTC 9401 92 3.29e-05 AGTGCACGTG CGACAACGTTAACGAA AAAAGGCAAC 4370 278 3.29e-05 AGTAAATACA GGTAGGCGCAGACGAA GTGTAGAGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 33231 4.6e-09 240_[+3]_244 5077 8.5e-08 130_[+3]_354 270316 8.5e-08 263_[+3]_221 270281 8.5e-08 129_[+3]_355 268474 8.5e-08 264_[+3]_220 6736 1.7e-07 428_[+3]_56 719 3.2e-07 329_[+3]_155 11757 5.1e-07 451_[+3]_33 4531 5.7e-07 399_[+3]_85 5188 9.8e-07 425_[+3]_59 33566 1.1e-06 388_[+3]_96 270378 1.1e-06 475_[+3]_9 261608 1.1e-06 474_[+3]_10 3326 1.8e-06 210_[+3]_274 8912 2e-06 121_[+3]_363 2767 2e-06 410_[+3]_74 270346 2.2e-06 265_[+3]_219 261232 2.2e-06 264_[+3]_220 25601 2.2e-06 154_[+3]_330 1091 4.7e-06 417_[+3]_67 10233 5.1e-06 417_[+3]_67 37294 7.2e-06 195_[+3]_289 7442 7.9e-06 52_[+3]_432 24669 8.5e-06 325_[+3]_159 6905 1.2e-05 449_[+3]_35 33891 1.2e-05 14_[+3]_470 31012 1.4e-05 478_[+3]_6 4718 1.5e-05 481_[+3]_3 261390 1.5e-05 434_[+3]_50 263658 2.9e-05 375_[+3]_109 9401 3.3e-05 91_[+3]_393 4370 3.3e-05 277_[+3]_207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=16 seqs=32 33231 ( 241) CGACGACGACGACGAC 1 5077 ( 131) CGCCCACGAGGACGAC 1 270316 ( 264) TGCATACGACGACGAC 1 270281 ( 130) CGCCCACGAGGACGAC 1 268474 ( 265) TGCATACGACGACGAC 1 6736 ( 429) TCCAGCCGACGACGAC 1 719 ( 330) TGACGACGAAAACAAC 1 11757 ( 452) TCCCGACGCTGACAAC 1 4531 ( 400) TGCCGACGTCGACGTC 1 5188 ( 426) CCTCCCCGAAGACGAC 1 33566 ( 389) GGGAGACGATGACAAC 1 270378 ( 476) GGTCAACTACGACAAC 1 261608 ( 475) GGTCAACTACGACAAC 1 3326 ( 211) CGCAACCGACGACGGC 1 8912 ( 122) TGCCGACGTCGACGAG 1 2767 ( 411) TGCCCACGAAGGCGTC 1 270346 ( 266) CGAACGCGAAGACAAC 1 261232 ( 265) CGAACGCGAAGACAAC 1 25601 ( 155) GTTAAACGAAGACAAC 1 1091 ( 418) TGCCAACTACAACCAC 1 10233 ( 418) TTTCAACGACGACACC 1 37294 ( 196) TGACAACGACGATGAA 1 7442 ( 53) TTGCGACGATGACGGC 1 24669 ( 326) TGCCGACGACGAGCAA 1 6905 ( 450) CCACGACGAAGGCAAA 1 33891 ( 15) TCTCGACGAACACCAC 1 31012 ( 479) CGGCCCCGATGGCAAC 1 4718 ( 482) TCCCAACAATAACAAC 1 261390 ( 435) GTCAGACGCAGACGTC 1 263658 ( 376) TTCAACCACCGACGAC 1 9401 ( 92) CGACAACGTTAACGAA 1 4370 ( 278) GGTAGGCGCAGACGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 35405 bayes= 11.4331 E= 4.3e-013 -1164 51 -36 89 -1164 -22 144 -79 -31 110 -136 -30 35 158 -1164 -1164 21 0 75 -211 147 -49 -136 -1164 -1164 219 -1164 -1164 -211 -1164 181 -152 153 -81 -1164 -152 21 100 -195 -52 -111 -280 181 -1164 175 -1164 -136 -1164 -1164 210 -295 -311 47 -122 114 -1164 159 -280 -195 -152 -79 189 -295 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 32 E= 4.3e-013 0.000000 0.312500 0.187500 0.500000 0.000000 0.187500 0.656250 0.156250 0.218750 0.468750 0.093750 0.218750 0.343750 0.656250 0.000000 0.000000 0.312500 0.218750 0.406250 0.062500 0.750000 0.156250 0.093750 0.000000 0.000000 1.000000 0.000000 0.000000 0.062500 0.000000 0.843750 0.093750 0.781250 0.125000 0.000000 0.093750 0.312500 0.437500 0.062500 0.187500 0.125000 0.031250 0.843750 0.000000 0.906250 0.000000 0.093750 0.000000 0.000000 0.937500 0.031250 0.031250 0.375000 0.093750 0.531250 0.000000 0.812500 0.031250 0.062500 0.093750 0.156250 0.812500 0.031250 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [TC]G[CAT][CA][GAC]ACGA[CA]GAC[GA]AC -------------------------------------------------------------------------------- Time 113.99 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10233 3.34e-06 182_[+2(3.54e-08)]_13_\ [+2(1.10e-05)]_180_[+3(5.12e-06)]_67 10277 9.71e-02 23_[+2(6.67e-05)]_149_\ [+2(2.09e-05)]_286 1049 2.69e-03 103_[+2(8.70e-05)]_214_\ [+2(8.78e-06)]_5_[+1(7.41e-05)]_121 1091 3.50e-06 254_[+2(6.51e-07)]_80_\ [+1(5.85e-05)]_5_[+3(9.51e-05)]_26_[+3(4.69e-06)]_67 11557 6.10e-03 169_[+2(4.61e-05)]_256_\ [+1(7.99e-05)]_39 11707 7.66e-02 500 11757 6.29e-04 97_[+2(8.70e-05)]_44_[+3(9.51e-05)]_\ 273_[+3(5.06e-07)]_33 1254 3.31e-03 254_[+1(8.84e-06)]_30_\ [+2(4.61e-05)]_180 1989 2.30e-03 25_[+2(1.30e-07)]_454 22117 3.94e-04 374_[+1(2.32e-07)]_111 22194 5.05e-03 224_[+2(7.83e-06)]_187_\ [+2(6.67e-05)]_8_[+1(6.87e-05)]_24 22744 2.81e-02 373_[+1(6.09e-06)]_112 2352 5.14e-03 428_[+1(2.29e-06)]_57 2386 8.51e-04 233_[+2(3.37e-06)]_231_\ [+1(1.94e-05)] 2465 6.80e-04 356_[+2(7.30e-05)]_45_\ [+1(3.09e-06)]_12_[+1(8.61e-05)]_36 24669 5.36e-05 225_[+2(3.82e-06)]_35_\ [+2(4.61e-05)]_23_[+3(8.53e-06)]_159 25601 2.78e-04 154_[+3(2.23e-06)]_101_\ [+1(5.39e-05)]_214 261232 1.04e-07 57_[+2(6.97e-06)]_186_\ [+3(2.23e-06)]_115_[+1(2.32e-07)]_90 261390 3.62e-05 30_[+2(2.29e-06)]_224_\ [+2(1.53e-05)]_117_[+1(7.41e-05)]_6_[+3(1.49e-05)]_50 261608 4.92e-11 33_[+2(1.78e-10)]_141_\ [+1(4.66e-06)]_264_[+3(1.10e-06)]_10 262059 1.33e-06 199_[+2(5.07e-05)]_29_\ [+3(7.12e-07)]_235 263658 2.66e-05 208_[+2(3.14e-05)]_146_\ [+3(2.87e-05)]_10_[+1(1.96e-06)]_84 264901 1.68e-03 60_[+1(3.83e-05)]_133_\ [+2(6.20e-06)]_59_[+2(3.14e-05)]_191 26548 2.16e-01 321_[+1(8.61e-05)]_164 268474 3.16e-05 30_[+2(2.57e-05)]_213_\ [+3(8.50e-08)]_220 268480 2.16e-04 226_[+2(3.46e-05)]_174_\ [+1(7.99e-05)]_11_[+1(4.11e-07)]_38 270280 2.30e-04 250_[+1(4.19e-05)]_36_\ [+2(4.12e-07)]_178 270281 4.17e-07 82_[+2(4.32e-06)]_26_[+3(8.50e-08)]_\ 129_[+1(4.56e-05)]_211 270316 3.16e-05 29_[+2(2.57e-05)]_213_\ [+3(8.50e-08)]_221 270346 1.04e-07 58_[+2(6.97e-06)]_186_\ [+3(2.23e-06)]_115_[+1(2.32e-07)]_89 270378 4.92e-11 34_[+2(1.78e-10)]_141_\ [+1(4.66e-06)]_264_[+3(1.10e-06)]_9 2767 3.32e-05 171_[+2(7.97e-05)]_97_\ [+1(1.41e-05)]_106_[+3(2.02e-06)]_74 283 9.74e-04 54_[+2(5.50e-06)]_394_\ [+1(1.57e-05)]_16 2846 2.34e-02 262_[+2(9.49e-05)]_174_\ [+1(4.95e-05)]_28 31012 4.01e-06 55_[+2(1.23e-05)]_49_[+2(7.30e-05)]_\ 196_[+3(5.55e-05)]_42_[+1(1.22e-06)]_63_[+3(1.38e-05)]_6 3166 1.49e-01 500 32431 3.63e-01 500 32964 1.20e-03 87_[+2(6.51e-07)]_392 33231 3.25e-07 30_[+1(3.49e-05)]_39_[+2(7.97e-05)]_\ 135_[+3(4.64e-09)]_189_[+3(6.36e-07)]_39 3326 1.42e-06 4_[+2(3.46e-05)]_185_[+3(1.83e-06)]_\ 216_[+1(1.02e-06)]_43 3327 2.89e-03 102_[+2(7.83e-06)]_377 33566 2.52e-03 388_[+3(1.10e-06)]_96 33891 5.61e-05 14_[+3(1.18e-05)]_85_[+2(1.10e-05)]_\ 223_[+1(3.18e-05)]_48_[+3(5.55e-05)]_62 35022 3.88e-02 314_[+2(2.09e-05)]_165 3506 3.25e-02 86_[+2(3.46e-05)]_393 35871 2.06e-02 56_[+1(4.95e-05)]_1_[+2(6.67e-05)]_\ 407 36091 6.93e-04 3_[+1(1.26e-05)]_427_[+2(6.97e-06)]_\ 34 37294 1.64e-02 195_[+3(7.22e-06)]_289 37534 2.62e-04 122_[+2(3.81e-05)]_278_\ [+1(1.02e-06)]_64 37615 2.54e-04 90_[+1(2.67e-06)]_225_\ [+2(4.61e-05)]_149 3974 2.85e-01 294_[+1(8.61e-05)]_191 4370 3.60e-02 277_[+3(3.29e-05)]_207 4376 1.88e-02 158_[+2(5.56e-05)]_220_\ [+1(6.87e-05)]_86 4531 3.69e-06 168_[+2(1.70e-05)]_210_\ [+3(5.71e-07)]_63_[+1(1.94e-05)]_7 4718 2.03e-04 417_[+1(7.04e-07)]_49_\ [+3(1.49e-05)]_3 5063 4.45e-05 155_[+2(4.88e-06)]_199_\ [+1(2.39e-05)]_71_[+1(2.67e-06)]_24 5077 4.17e-07 83_[+2(4.32e-06)]_26_[+3(8.50e-08)]_\ 129_[+1(4.56e-05)]_210 5188 2.55e-03 425_[+3(9.84e-07)]_59 5240 2.65e-04 226_[+1(4.19e-05)]_36_\ [+2(4.12e-07)]_202 5415 8.89e-05 19_[+1(9.99e-06)]_21_[+2(1.37e-05)]_\ 325_[+2(1.53e-06)]_78 5632 7.37e-04 67_[+1(1.13e-05)]_258_\ [+2(4.88e-06)]_139 6139 3.21e-04 71_[+2(1.37e-05)]_196_\ [+2(9.49e-05)]_159_[+1(5.34e-06)]_17 6736 1.47e-06 119_[+2(2.61e-06)]_288_\ [+3(1.68e-07)]_56 6802 1.68e-02 7_[+2(3.46e-05)]_472 6905 2.99e-05 112_[+1(4.06e-06)]_219_\ [+2(4.20e-05)]_82_[+3(1.18e-05)]_35 719 2.48e-04 96_[+2(3.81e-05)]_212_\ [+3(3.16e-07)]_155 7442 1.41e-06 2_[+2(2.01e-06)]_29_[+3(7.86e-06)]_\ 394_[+1(4.06e-06)]_23 8063 1.76e-01 500 8912 4.96e-06 52_[+3(8.48e-05)]_53_[+3(2.02e-06)]_\ 108_[+2(4.20e-05)]_118_[+1(3.09e-06)]_101 9021 7.68e-02 461_[+1(8.61e-05)]_24 9401 1.83e-02 91_[+3(3.29e-05)]_393 bd1426 4.92e-01 500 ThpsCp056 4.92e-01 500 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************