******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/244/244.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10548 1.0000 500 1175 1.0000 500 1628 1.0000 500 1905 1.0000 500 20653 1.0000 500 21176 1.0000 500 22918 1.0000 500 24874 1.0000 500 25507 1.0000 500 262965 1.0000 500 3292 1.0000 500 36476 1.0000 500 3650 1.0000 500 3708 1.0000 500 3718 1.0000 500 41372 1.0000 500 5241 1.0000 500 5690 1.0000 500 8261 1.0000 500 900 1.0000 500 9199 1.0000 500 951 1.0000 500 9577 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/244/244.seqs.fa -oc motifs/244 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 23 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 11500 N= 23 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.257 C 0.242 G 0.235 T 0.266 Background letter frequencies (from dataset with add-one prior applied): A 0.257 C 0.242 G 0.235 T 0.266 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 20 llr = 242 E-value = 5.7e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 163:94:4414116214:73: pos.-specific C a2281685475773554941a probability G :3::::2:1:11:11::1::: matrix T ::521112231221453::71 bits 2.1 1.9 1.7 * * * 1.5 * * * Relative 1.3 * ** * * Entropy 1.0 * ** * ** * (17.4 bits) 0.8 * ** * * * **** 0.6 ** ***** * *** * **** 0.4 ******** * *** ****** 0.2 ********************* 0.0 --------------------- Multilevel CATCACCCACCCCACCACATC consensus GAT A ACTATTCTTC CA sequence CC T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 951 460 1.09e-10 TATTACTACC CATCACCCACCCCAATCCATC AACTCGACGA 3708 480 5.95e-09 CGTCGACGCA CATCATCCCTCCCATCACATC 3718 391 1.91e-08 CGAAATACAA CATCACCTCCACCAGTACATC TCCATCCCCT 1905 395 2.50e-08 CGACAACACA CAACAACACCACCCCACCATC CACAACAACA 5690 368 7.77e-08 TGTATGGACA CATCAACCACCCCCCTCCCTT CCATCCGGCC 262965 178 1.38e-07 TGGTGGTAGT CCCCAACAACAACATCACATC AAACCTAATG 1628 106 1.93e-07 CCGACACTAA CACTACCAGCACCACCCCCTC GGAGACGACG 20653 314 2.94e-07 CTTCATTAAT CGTCACCCACATTCTTTCAAC TTCCTCCTTC 24874 226 6.51e-07 TCTCACCCAC CCACACGATCATCACTCCCTC TCAATGGCGT 5241 433 7.85e-07 ACCCATCACC CACCACCAAAGCCACCAGATC ACTTCATCAC 36476 442 7.85e-07 TGTCCATCCA CATCAATCATCCTACTTCCAC GCTGCAACCA 3292 465 9.43e-07 CTAGAAGTCA CGTCCACCTCCCTCCTCCCTC TCAACTTCCA 9199 460 3.61e-06 CGTTTGGTTT CACCACTCATATCATTACACC AATCAAGAAA 1175 109 3.61e-06 CTCATGTCGC CCACAACCTCTCAAACACAAC ACCGGGAAAT 8261 108 5.66e-06 GCATCTTGAT CGACACCCCATGCACCTCCAC TTAATCCCTT 22918 467 5.66e-06 TTGGGACTCT CCTTACCTCTCCTCCAACAAC TACTCCGCTT 25507 447 6.53e-06 GCGTCCACTC AGATACGCACCTCATCTCATC CTTTCATACA 21176 399 1.21e-05 ATCAAATGAA CATCACGTCCGCCTTCCGCTC AACCTCTACG 10548 373 1.29e-05 TCAAACGATA CAACCACACTCCAGACACATC ATAAGGAGAT 900 375 3.34e-05 TCCATTTACG CGTTTTCACCCACCTTTCAAC GGGACTCTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 951 1.1e-10 459_[+1]_20 3708 6e-09 479_[+1] 3718 1.9e-08 390_[+1]_89 1905 2.5e-08 394_[+1]_85 5690 7.8e-08 367_[+1]_112 262965 1.4e-07 177_[+1]_302 1628 1.9e-07 105_[+1]_374 20653 2.9e-07 313_[+1]_166 24874 6.5e-07 225_[+1]_254 5241 7.8e-07 432_[+1]_47 36476 7.8e-07 441_[+1]_38 3292 9.4e-07 464_[+1]_15 9199 3.6e-06 459_[+1]_20 1175 3.6e-06 108_[+1]_371 8261 5.7e-06 107_[+1]_372 22918 5.7e-06 466_[+1]_13 25507 6.5e-06 446_[+1]_33 21176 1.2e-05 398_[+1]_81 10548 1.3e-05 372_[+1]_107 900 3.3e-05 374_[+1]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=20 951 ( 460) CATCACCCACCCCAATCCATC 1 3708 ( 480) CATCATCCCTCCCATCACATC 1 3718 ( 391) CATCACCTCCACCAGTACATC 1 1905 ( 395) CAACAACACCACCCCACCATC 1 5690 ( 368) CATCAACCACCCCCCTCCCTT 1 262965 ( 178) CCCCAACAACAACATCACATC 1 1628 ( 106) CACTACCAGCACCACCCCCTC 1 20653 ( 314) CGTCACCCACATTCTTTCAAC 1 24874 ( 226) CCACACGATCATCACTCCCTC 1 5241 ( 433) CACCACCAAAGCCACCAGATC 1 36476 ( 442) CATCAATCATCCTACTTCCAC 1 3292 ( 465) CGTCCACCTCCCTCCTCCCTC 1 9199 ( 460) CACCACTCATATCATTACACC 1 1175 ( 109) CCACAACCTCTCAAACACAAC 1 8261 ( 108) CGACACCCCATGCACCTCCAC 1 22918 ( 467) CCTTACCTCTCCTCCAACAAC 1 25507 ( 447) AGATACGCACCTCATCTCATC 1 21176 ( 399) CATCACGTCCGCCTTCCGCTC 1 10548 ( 373) CAACCACACTCCAGACACATC 1 900 ( 375) CGTTTTCACCCACCTTTCAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 11040 bayes= 9.35787 E= 5.7e-008 -236 197 -1097 -1097 110 -28 9 -1097 23 -28 -1097 91 -1097 172 -1097 -41 173 -128 -1097 -241 45 118 -1097 -141 -1097 163 -65 -141 45 104 -1097 -83 64 72 -223 -83 -136 142 -1097 -9 45 89 -123 -141 -136 142 -223 -41 -136 153 -1097 -41 122 31 -223 -241 -77 89 -223 39 -136 89 -1097 76 64 53 -1097 -9 -1097 189 -123 -1097 134 53 -1097 -1097 23 -227 -1097 129 -1097 197 -1097 -241 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 20 E= 5.7e-008 0.050000 0.950000 0.000000 0.000000 0.550000 0.200000 0.250000 0.000000 0.300000 0.200000 0.000000 0.500000 0.000000 0.800000 0.000000 0.200000 0.850000 0.100000 0.000000 0.050000 0.350000 0.550000 0.000000 0.100000 0.000000 0.750000 0.150000 0.100000 0.350000 0.500000 0.000000 0.150000 0.400000 0.400000 0.050000 0.150000 0.100000 0.650000 0.000000 0.250000 0.350000 0.450000 0.100000 0.100000 0.100000 0.650000 0.050000 0.200000 0.100000 0.700000 0.000000 0.200000 0.600000 0.300000 0.050000 0.050000 0.150000 0.450000 0.050000 0.350000 0.100000 0.450000 0.000000 0.450000 0.400000 0.350000 0.000000 0.250000 0.000000 0.900000 0.100000 0.000000 0.650000 0.350000 0.000000 0.000000 0.300000 0.050000 0.000000 0.650000 0.000000 0.950000 0.000000 0.050000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- C[AGC][TAC][CT]A[CA]C[CA][AC][CT][CA][CT][CT][AC][CT][CT][ACT]C[AC][TA]C -------------------------------------------------------------------------------- Time 4.77 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 15 llr = 202 E-value = 1.0e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :::1:1:3:::111::1:2:2 pos.-specific C :::42161:121111111:41 probability G 3173:742a3181291:7717 matrix T 793281:3:57165:88215: bits 2.1 * 1.9 * 1.7 * * 1.5 * * * Relative 1.3 ** * * * Entropy 1.0 *** * * * * *** * (19.4 bits) 0.8 *** *** * ** ***** * 0.6 *** *** **** ******* 0.4 *** *** ***** ******* 0.2 ******* ************* 0.0 --------------------- Multilevel TTGCTGCAGTTGTTGTTGGTG consensus G TGC GT GC G TACA sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 3292 240 7.13e-11 CTGGCATGGC TTGCTGCGGTCGTTGTTGGTG CCATGTGAAG 21176 130 2.61e-09 GAGGCTACTG TTGTTGCTGTCGTTGTTGGCA GACGAGCGGT 951 105 9.54e-09 GAGTGGTTGT TTGCTGCTGTTGGAGTTGTTG TGTCCGTGGG 9577 339 7.98e-08 TATTGGGCAA TTGCTGGAGGTGTTGCTCGCA GAACCCTCCT 262965 386 9.75e-08 GGAAACAAAA TTGGCTCCGGTGTAGTTGGTG ATACGTCTTC 5690 267 1.08e-07 TTGCTTGGCT GTTGTGGGGTTGCGGTTGTTG CAGACTCCCA 5241 228 1.91e-07 TTGCGACTCT GTTCTGCTGCTGTTGTTCGTC GTTCGTTGGG 10548 181 2.75e-07 GTGGTATTCA TTGTCGGAGGTGTTGGTTGCA GAGGAGGCAT 8261 298 4.26e-07 CTCGATTCAT GTTGTGGTGTGGTGGTAGGTG TACTGATGGA 36476 40 6.46e-07 GAATCTTATC TTGCTGCGGGTATTGTCTGGG CTTCGTGAGT 3718 29 8.23e-07 AATAAAGCAA GTGGCACCGTTGCCGTTGATG TAGCCTTCGT 3708 110 1.12e-06 TCATGGTGAA GTTCTGCTGTTTGTGGTGACG AGGAAGTTAT 25507 363 1.52e-06 ATCCAATATT TGGATACAGTTGAGGTTGACG CCCCCTCTCC 9199 137 2.33e-06 GCACCCTTTT TGGTTCGAGCTGTCGTCGGCG GCAGCTCTCT 3650 75 2.86e-06 CCAATCGTCA TTGGTGGAGGCCATCTTTGTG GATGTTCGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 3292 7.1e-11 239_[+2]_240 21176 2.6e-09 129_[+2]_350 951 9.5e-09 104_[+2]_375 9577 8e-08 338_[+2]_141 262965 9.7e-08 385_[+2]_94 5690 1.1e-07 266_[+2]_213 5241 1.9e-07 227_[+2]_252 10548 2.8e-07 180_[+2]_299 8261 4.3e-07 297_[+2]_182 36476 6.5e-07 39_[+2]_440 3718 8.2e-07 28_[+2]_451 3708 1.1e-06 109_[+2]_370 25507 1.5e-06 362_[+2]_117 9199 2.3e-06 136_[+2]_343 3650 2.9e-06 74_[+2]_405 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=15 3292 ( 240) TTGCTGCGGTCGTTGTTGGTG 1 21176 ( 130) TTGTTGCTGTCGTTGTTGGCA 1 951 ( 105) TTGCTGCTGTTGGAGTTGTTG 1 9577 ( 339) TTGCTGGAGGTGTTGCTCGCA 1 262965 ( 386) TTGGCTCCGGTGTAGTTGGTG 1 5690 ( 267) GTTGTGGGGTTGCGGTTGTTG 1 5241 ( 228) GTTCTGCTGCTGTTGTTCGTC 1 10548 ( 181) TTGTCGGAGGTGTTGGTTGCA 1 8261 ( 298) GTTGTGGTGTGGTGGTAGGTG 1 36476 ( 40) TTGCTGCGGGTATTGTCTGGG 1 3718 ( 29) GTGGCACCGTTGCCGTTGATG 1 3708 ( 110) GTTCTGCTGTTTGTGGTGACG 1 25507 ( 363) TGGATACAGTTGAGGTTGACG 1 9199 ( 137) TGGTTCGAGCTGTCGTCGGCG 1 3650 ( 75) TTGGTGGAGGCCATCTTTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 11040 bayes= 10.1966 E= 1.0e-004 -1055 -1055 51 132 -1055 -1055 -82 170 -1055 -1055 164 0 -194 72 51 -41 -1055 -28 -1055 159 -94 -186 164 -200 -1055 131 77 -1055 38 -86 -23 32 -1055 -1055 209 -1055 -1055 -86 51 100 -1055 -28 -181 146 -194 -186 177 -200 -94 -86 -82 117 -94 -86 -23 100 -1055 -186 199 -1055 -1055 -186 -82 159 -194 -86 -1055 159 -1055 -86 151 -41 -36 -1055 151 -100 -1055 72 -181 100 -36 -186 164 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 15 E= 1.0e-004 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.133333 0.866667 0.000000 0.000000 0.733333 0.266667 0.066667 0.400000 0.333333 0.200000 0.000000 0.200000 0.000000 0.800000 0.133333 0.066667 0.733333 0.066667 0.000000 0.600000 0.400000 0.000000 0.333333 0.133333 0.200000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.133333 0.333333 0.533333 0.000000 0.200000 0.066667 0.733333 0.066667 0.066667 0.800000 0.066667 0.133333 0.133333 0.133333 0.600000 0.133333 0.133333 0.200000 0.533333 0.000000 0.066667 0.933333 0.000000 0.000000 0.066667 0.133333 0.800000 0.066667 0.133333 0.000000 0.800000 0.000000 0.133333 0.666667 0.200000 0.200000 0.000000 0.666667 0.133333 0.000000 0.400000 0.066667 0.533333 0.200000 0.066667 0.733333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [TG]T[GT][CGT][TC]G[CG][ATG]G[TG][TC]GT[TG]GTT[GT][GA][TC][GA] -------------------------------------------------------------------------------- Time 9.46 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 9 llr = 141 E-value = 4.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :273:63712:191::928:1 pos.-specific C 1::1::23:611:1:1:::3: probability G 981:a33:6298:8a718147 matrix T ::26:11:3:::1::2::122 bits 2.1 * * 1.9 * * 1.7 * * * * 1.5 * * * * * * Relative 1.3 ** * * * * ** Entropy 1.0 ** * * ***** *** (22.6 bits) 0.8 *** * * ********* * 0.6 ****** ************ * 0.4 ****** ************** 0.2 ********************* 0.0 --------------------- Multilevel GGATGAAAGCGGAGGGAGAGG consensus ATA GGCTA T A CT sequence C G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 24874 333 1.66e-10 GCTGCGGGGG GGATGAACACGGAGGGAGACG ATGGCAATGG 9577 109 2.55e-09 TCAGTACAGA GGAAGAAAGAGGAGGCAAAGG GTGATGATTC 5690 189 2.55e-09 CCATTGTATT GATTGAGAGGGGAGGGAGAGT GTTGCTTTGT 3718 249 9.57e-09 CTCCATCGAC CGATGAGATGGCAGGGAGAGG TAGGCCGCTG 951 133 2.57e-08 TTGTGTCCGT GGGTGGCAGCGGAGGTAGATA GTGTCCACTA 1905 239 9.04e-08 TGCATACTTG GATTGAGATCGGTGGGAGGTG TCTGCGTTGA 41372 335 1.20e-07 GAGTTGTGAG GGACGGACGAGGAAGGAAAGT CGACAAAGGC 3708 132 1.20e-07 GTGGTGACGA GGAAGTTATCGGAGGGGGTCG AAGGCGAAAG 20653 400 3.79e-07 GGCAGCAGCA GGAAGGCCGCCAACGTAGACG AGACATAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 24874 1.7e-10 332_[+3]_147 9577 2.6e-09 108_[+3]_371 5690 2.6e-09 188_[+3]_291 3718 9.6e-09 248_[+3]_231 951 2.6e-08 132_[+3]_347 1905 9e-08 238_[+3]_241 41372 1.2e-07 334_[+3]_145 3708 1.2e-07 131_[+3]_348 20653 3.8e-07 399_[+3]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=9 24874 ( 333) GGATGAACACGGAGGGAGACG 1 9577 ( 109) GGAAGAAAGAGGAGGCAAAGG 1 5690 ( 189) GATTGAGAGGGGAGGGAGAGT 1 3718 ( 249) CGATGAGATGGCAGGGAGAGG 1 951 ( 133) GGGTGGCAGCGGAGGTAGATA 1 1905 ( 239) GATTGAGATCGGTGGGAGGTG 1 41372 ( 335) GGACGGACGAGGAAGGAAAGT 1 3708 ( 132) GGAAGTTATCGGAGGGGGTCG 1 20653 ( 400) GGAAGGCCGCCAACGTAGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 11040 bayes= 10.3938 E= 4.1e+000 -982 -112 192 -982 -21 -982 173 -982 138 -982 -108 -26 38 -112 -982 106 -982 -982 209 -982 111 -982 51 -126 38 -12 51 -126 138 46 -982 -982 -121 -982 124 32 -21 120 -8 -982 -982 -112 192 -982 -121 -112 173 -982 179 -982 -982 -126 -121 -112 173 -982 -982 -982 209 -982 -982 -112 151 -26 179 -982 -108 -982 -21 -982 173 -982 160 -982 -108 -126 -982 46 92 -26 -121 -982 151 -26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 9 E= 4.1e+000 0.000000 0.111111 0.888889 0.000000 0.222222 0.000000 0.777778 0.000000 0.666667 0.000000 0.111111 0.222222 0.333333 0.111111 0.000000 0.555556 0.000000 0.000000 1.000000 0.000000 0.555556 0.000000 0.333333 0.111111 0.333333 0.222222 0.333333 0.111111 0.666667 0.333333 0.000000 0.000000 0.111111 0.000000 0.555556 0.333333 0.222222 0.555556 0.222222 0.000000 0.000000 0.111111 0.888889 0.000000 0.111111 0.111111 0.777778 0.000000 0.888889 0.000000 0.000000 0.111111 0.111111 0.111111 0.777778 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.666667 0.222222 0.888889 0.000000 0.111111 0.000000 0.222222 0.000000 0.777778 0.000000 0.777778 0.000000 0.111111 0.111111 0.000000 0.333333 0.444444 0.222222 0.111111 0.000000 0.666667 0.222222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- G[GA][AT][TA]G[AG][AGC][AC][GT][CAG]GGAGG[GT]A[GA]A[GCT][GT] -------------------------------------------------------------------------------- Time 13.49 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10548 5.53e-05 180_[+2(2.75e-07)]_171_\ [+1(1.29e-05)]_107 1175 2.86e-03 108_[+1(3.61e-06)]_371 1628 4.78e-04 105_[+1(1.93e-07)]_374 1905 3.80e-08 238_[+3(9.04e-08)]_135_\ [+1(2.50e-08)]_85 20653 3.12e-06 313_[+1(2.94e-07)]_65_\ [+3(3.79e-07)]_80 21176 5.85e-07 129_[+2(2.61e-09)]_117_\ [+2(5.97e-05)]_36_[+2(2.46e-05)]_53_[+1(1.21e-05)]_81 22918 6.34e-02 466_[+1(5.66e-06)]_13 24874 7.72e-09 225_[+1(6.51e-07)]_86_\ [+3(1.66e-10)]_147 25507 6.92e-05 362_[+2(1.52e-06)]_63_\ [+1(6.53e-06)]_33 262965 2.35e-07 177_[+1(1.38e-07)]_187_\ [+2(9.75e-08)]_94 3292 1.40e-09 239_[+2(7.13e-11)]_204_\ [+1(9.43e-07)]_15 36476 3.71e-06 39_[+2(6.46e-07)]_381_\ [+1(7.85e-07)]_38 3650 4.70e-03 74_[+2(2.86e-06)]_405 3708 4.29e-11 109_[+2(1.12e-06)]_1_[+3(1.20e-07)]_\ 327_[+1(5.95e-09)] 3718 8.91e-12 28_[+2(8.23e-07)]_160_\ [+3(7.41e-05)]_18_[+3(9.57e-09)]_121_[+1(1.91e-08)]_89 41372 1.97e-03 334_[+3(1.20e-07)]_145 5241 1.89e-06 227_[+2(1.91e-07)]_114_\ [+1(3.94e-05)]_49_[+1(7.85e-07)]_47 5690 1.42e-12 156_[+2(4.17e-05)]_11_\ [+3(2.55e-09)]_57_[+2(1.08e-07)]_80_[+1(7.77e-08)]_112 8261 3.91e-05 107_[+1(5.66e-06)]_24_\ [+1(1.99e-05)]_124_[+2(4.26e-07)]_182 900 1.71e-01 374_[+1(3.34e-05)]_105 9199 9.38e-05 136_[+2(2.33e-06)]_302_\ [+1(3.61e-06)]_20 951 2.54e-15 104_[+2(9.54e-09)]_7_[+3(2.57e-08)]_\ 137_[+1(3.94e-05)]_148_[+1(1.09e-10)]_20 9577 1.31e-08 108_[+3(2.55e-09)]_209_\ [+2(7.98e-08)]_141 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************