******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/252/252.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10815 1.0000 500 11261 1.0000 500 11749 1.0000 500 12836 1.0000 500 16303 1.0000 500 1971 1.0000 500 20864 1.0000 500 21733 1.0000 500 21791 1.0000 500 22138 1.0000 500 24183 1.0000 500 25284 1.0000 500 2555 1.0000 500 261466 1.0000 500 262287 1.0000 500 263483 1.0000 500 264122 1.0000 500 270069 1.0000 500 36275 1.0000 500 36372 1.0000 500 3655 1.0000 500 37362 1.0000 500 37963 1.0000 500 4576 1.0000 500 5780 1.0000 500 7480 1.0000 500 bd651 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/252/252.seqs.fa -oc motifs/252 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 27 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 13500 N= 27 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.261 C 0.230 G 0.249 T 0.260 Background letter frequencies (from dataset with add-one prior applied): A 0.261 C 0.230 G 0.249 T 0.260 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 20 sites = 13 llr = 191 E-value = 5.3e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A ::1:11::1::1:::4:::1 pos.-specific C 8::4::2:123:::2:::1: probability G 152:72:92276348:8519 matrix T 1576288165:376:6258: bits 2.1 1.9 1.7 * * 1.5 * * Relative 1.3 * ** * * ** Entropy 1.1 ** * *** * ******** (21.1 bits) 0.8 ******** * ******** 0.6 ******** *********** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel CTTTGTTGTTGGTTGTGTTG consensus GGCT GCCTGGCATG sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 21733 360 1.44e-11 TCGTCGTCGT CGTCGTTGTTGGTTGTGGTG TGAAATTGTA 2555 142 7.82e-11 CTGGAGTTGG CGTTGTTGTTGGTGGAGGTG TCAAAGAGGA 16303 178 5.24e-10 GGCTGTTGTG CTGTGTTGGTGGTTGTGTTG TTTGATGGAG 4576 182 3.14e-08 CTTCTTCTTG CTTTGTCGTCCGTTGATTTG GATGGCTCCG 37362 15 9.31e-08 CTATCGTCGA CGTCGTTGCTGGGGGTGTCG TTTTGACGTG 21791 294 1.77e-07 TCGTGCCTTT GTTTGTTTTCCGTTGTGTTG AGCTGCATCA 7480 176 1.92e-07 TTGCCCATTG CTGTTTTGTGCTGTGTTGTG CTGCGCTTCC 262287 238 1.92e-07 TCAAGCTTGC CTACGTTGATGTTTCTGGTG GGCACACTGA 11261 136 2.98e-07 ACGTCATGGT CGGTGGTGTGGGTTGTTGGG TGTGATCTCA 37963 270 3.43e-07 CAGGTGAGTA TTTTTTTGGGGGGGGAGGTG CTGTTTATTG 25284 121 4.22e-07 AATGCATTAC CGTCTGTGTCGTTGGTGTTA TCCGAGGTGG 22138 132 4.82e-07 CACTAAATGT CGTCATTGTTCATGCAGTTG ACCCCTTTTC 36372 346 5.49e-07 GATCACCTTC CTTTGACGGTGTGTCAGTTG ACGCGGTGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 21733 1.4e-11 359_[+1]_121 2555 7.8e-11 141_[+1]_339 16303 5.2e-10 177_[+1]_303 4576 3.1e-08 181_[+1]_299 37362 9.3e-08 14_[+1]_466 21791 1.8e-07 293_[+1]_187 7480 1.9e-07 175_[+1]_305 262287 1.9e-07 237_[+1]_243 11261 3e-07 135_[+1]_345 37963 3.4e-07 269_[+1]_211 25284 4.2e-07 120_[+1]_360 22138 4.8e-07 131_[+1]_349 36372 5.5e-07 345_[+1]_135 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=20 seqs=13 21733 ( 360) CGTCGTTGTTGGTTGTGGTG 1 2555 ( 142) CGTTGTTGTTGGTGGAGGTG 1 16303 ( 178) CTGTGTTGGTGGTTGTGTTG 1 4576 ( 182) CTTTGTCGTCCGTTGATTTG 1 37362 ( 15) CGTCGTTGCTGGGGGTGTCG 1 21791 ( 294) GTTTGTTTTCCGTTGTGTTG 1 7480 ( 176) CTGTTTTGTGCTGTGTTGTG 1 262287 ( 238) CTACGTTGATGTTTCTGGTG 1 11261 ( 136) CGGTGGTGTGGGTTGTTGGG 1 37963 ( 270) TTTTTTTGGGGGGGGAGGTG 1 25284 ( 121) CGTCTGTGTCGTTGGTGTTA 1 22138 ( 132) CGTCATTGTTCATGCAGTTG 1 36372 ( 346) CTTTGACGGTGTGTCAGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 12987 bayes= 10.4939 E= 5.3e-005 -1035 188 -169 -175 -1035 -1035 89 105 -176 -1035 -11 141 -1035 74 -1035 124 -176 -1035 147 -17 -176 -1035 -70 157 -1035 -58 -1035 170 -1035 -1035 189 -175 -176 -158 -11 124 -1035 1 -11 105 -1035 42 147 -1035 -176 -1035 130 24 -1035 -1035 30 141 -1035 -1035 62 124 -1035 1 162 -1035 56 -1035 -1035 124 -1035 -1035 162 -17 -1035 -1035 89 105 -1035 -158 -169 170 -176 -1035 189 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 13 E= 5.3e-005 0.000000 0.846154 0.076923 0.076923 0.000000 0.000000 0.461538 0.538462 0.076923 0.000000 0.230769 0.692308 0.000000 0.384615 0.000000 0.615385 0.076923 0.000000 0.692308 0.230769 0.076923 0.000000 0.153846 0.769231 0.000000 0.153846 0.000000 0.846154 0.000000 0.000000 0.923077 0.076923 0.076923 0.076923 0.230769 0.615385 0.000000 0.230769 0.230769 0.538462 0.000000 0.307692 0.692308 0.000000 0.076923 0.000000 0.615385 0.307692 0.000000 0.000000 0.307692 0.692308 0.000000 0.000000 0.384615 0.615385 0.000000 0.230769 0.769231 0.000000 0.384615 0.000000 0.000000 0.615385 0.000000 0.000000 0.769231 0.230769 0.000000 0.000000 0.461538 0.538462 0.000000 0.076923 0.076923 0.846154 0.076923 0.000000 0.923077 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- C[TG][TG][TC][GT]TTG[TG][TCG][GC][GT][TG][TG][GC][TA][GT][TG]TG -------------------------------------------------------------------------------- Time 6.35 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 12 sites = 27 llr = 227 E-value = 5.7e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 72a51a7:6243 pos.-specific C 18:39::a3435 probability G 1::2::2::112 matrix T :::1::1:132: bits 2.1 * 1.9 * * 1.7 * ** * 1.5 ** ** * Relative 1.3 ** ** * Entropy 1.1 ** ** * (12.1 bits) 0.8 *** ** ** 0.6 *** ***** 0.4 *** ***** * 0.2 ************ 0.0 ------------ Multilevel ACAACAACACAC consensus C G CTCA sequence TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 36372 124 2.60e-07 AACGTCCTTT ACAACAACATAC GGAGCCGACC 264122 200 3.48e-07 GACACCACTG ACACCAACACCC CACCCAAAGA 263483 473 1.04e-06 GAGATTCGAT ACACCAACATAC ACAAACACAC 10815 301 6.69e-06 GATACGAACC ACAACAGCAACC GCAAGCAAAA 37362 452 1.00e-05 CTGACACAGC ACAACATCATAC CATAGATACG 12836 169 1.00e-05 GGTGTCAATA ACAACAACAGTA ACGAGGCAGG 22138 250 1.15e-05 TTTCTCGAAG AAAACAACACAG CATCAACGCA 261466 440 1.31e-05 CGCGCCTGGT ACACCAGCACCG CACCGCCGCA 21733 185 1.89e-05 CGATGCCGAC GCAACAACAGAC GAACCTCGTC 20864 430 2.62e-05 CACCTGTCCT ACACCAACCTTG CGTTTCTCGT 21791 361 2.94e-05 AGAGTGTAGA ACAACATCCTCC ATCCTCCAAC 24183 466 3.27e-05 AAAACTTCAT ACACCAACACCT ATATATGTGT 25284 475 4.08e-05 CACATTCGTG ACAACATCCGAC GGCACCCCTC 5780 320 4.51e-05 TTCTAACTCC CCAACAGCCCCC CTCAGCTCTC 2555 399 5.47e-05 TGAGTAGTGT GCAACAACCCTA CGAGCCTCCT 3655 413 7.87e-05 GGCGTTGACG CCAGCAACCAAC GGGTAGCTGT 262287 377 7.87e-05 TGAGAGTGAA AAAGCAGCACTC TGCAAGAAAG bd651 63 9.37e-05 GGCCATTCAA AAAGCAGCACAA AATCTCTTCC 37963 398 1.02e-04 TCTTGCGTCA ACAAAAACAACA AGAGGCACAG 11749 114 1.02e-04 AGAGCTCGGT ACACCCACAAAC GCAAGACAAC 1971 364 1.11e-04 TCACCCTCGT CCAGCAACATTA TCTAGTCAGA 7480 483 1.19e-04 CAGACGACAA ACAACAACTCGA AACATC 36275 116 2.16e-04 GACGATACCG TCAACAACAGTG CAAACAACGA 270069 307 2.16e-04 CTCCTGATCA ACAGCAACTTGC AATGAGCAAC 16303 24 2.31e-04 ATTATCCGAC AAACAAACACAA AATGTCAACA 11261 239 2.99e-04 AGCAAACATC AAATCAACCAAG GCCTCGTATC 4576 32 4.26e-04 GCCGGATGAT GCATCAGCCCCG TTGCGTTCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 36372 2.6e-07 123_[+2]_365 264122 3.5e-07 199_[+2]_289 263483 1e-06 472_[+2]_16 10815 6.7e-06 300_[+2]_188 37362 1e-05 451_[+2]_37 12836 1e-05 168_[+2]_320 22138 1.1e-05 249_[+2]_239 261466 1.3e-05 439_[+2]_49 21733 1.9e-05 184_[+2]_304 20864 2.6e-05 429_[+2]_59 21791 2.9e-05 360_[+2]_128 24183 3.3e-05 465_[+2]_23 25284 4.1e-05 474_[+2]_14 5780 4.5e-05 319_[+2]_169 2555 5.5e-05 398_[+2]_90 3655 7.9e-05 412_[+2]_76 262287 7.9e-05 376_[+2]_112 bd651 9.4e-05 62_[+2]_426 37963 0.0001 397_[+2]_91 11749 0.0001 113_[+2]_375 1971 0.00011 363_[+2]_125 7480 0.00012 482_[+2]_6 36275 0.00022 115_[+2]_373 270069 0.00022 306_[+2]_182 16303 0.00023 23_[+2]_465 11261 0.0003 238_[+2]_250 4576 0.00043 31_[+2]_457 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=12 seqs=27 36372 ( 124) ACAACAACATAC 1 264122 ( 200) ACACCAACACCC 1 263483 ( 473) ACACCAACATAC 1 10815 ( 301) ACAACAGCAACC 1 37362 ( 452) ACAACATCATAC 1 12836 ( 169) ACAACAACAGTA 1 22138 ( 250) AAAACAACACAG 1 261466 ( 440) ACACCAGCACCG 1 21733 ( 185) GCAACAACAGAC 1 20864 ( 430) ACACCAACCTTG 1 21791 ( 361) ACAACATCCTCC 1 24183 ( 466) ACACCAACACCT 1 25284 ( 475) ACAACATCCGAC 1 5780 ( 320) CCAACAGCCCCC 1 2555 ( 399) GCAACAACCCTA 1 3655 ( 413) CCAGCAACCAAC 1 262287 ( 377) AAAGCAGCACTC 1 bd651 ( 63) AAAGCAGCACAA 1 37963 ( 398) ACAAAAACAACA 1 11749 ( 114) ACACCCACAAAC 1 1971 ( 364) CCAGCAACATTA 1 7480 ( 483) ACAACAACTCGA 1 36275 ( 116) TCAACAACAGTG 1 270069 ( 307) ACAGCAACTTGC 1 16303 ( 24) AAACAAACACAA 1 11261 ( 239) AAATCAACCAAG 1 4576 ( 32) GCATCAGCCCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 13203 bayes= 8.93074 E= 5.7e-003 150 -105 -117 -281 -50 183 -1140 -1140 194 -1140 -1140 -1140 88 18 -43 -181 -182 201 -1140 -1140 188 -263 -1140 -1140 135 -1140 -17 -122 -1140 212 -1140 -1140 127 37 -1140 -181 -50 83 -75 0 64 37 -175 -22 -1 107 -17 -281 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 27 E= 5.7e-003 0.740741 0.111111 0.111111 0.037037 0.185185 0.814815 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.481481 0.259259 0.185185 0.074074 0.074074 0.925926 0.000000 0.000000 0.962963 0.037037 0.000000 0.000000 0.666667 0.000000 0.222222 0.111111 0.000000 1.000000 0.000000 0.000000 0.629630 0.296296 0.000000 0.074074 0.185185 0.407407 0.148148 0.259259 0.407407 0.296296 0.074074 0.222222 0.259259 0.481481 0.222222 0.037037 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- ACA[AC]CA[AG]C[AC][CT][ACT][CAG] -------------------------------------------------------------------------------- Time 12.46 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 12 llr = 169 E-value = 2.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :12:35:59234::53312:8 pos.-specific C :2::1:1:1:1:::1::3::: probability G 34:a2:95:8337928742a: matrix T 838:45:::133313:127:3 bits 2.1 1.9 * * 1.7 * * * 1.5 * * * * * Relative 1.3 ** * * * * * Entropy 1.1 * ** *** ** * ** (20.3 bits) 0.8 * ** ***** ** ** ** 0.6 * ** ***** ** ** *** 0.4 * ** ***** *** ** *** 0.2 ********************* 0.0 --------------------- Multilevel TGTGTAGAAGGAGGAGGGTGA consensus GT AT G TGT TAAC T sequence AT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 36275 271 2.10e-10 TATTGAGTCT TTTGAAGAAGTTGGAGGCTGA AATAGCGGCG 261466 89 1.92e-09 TTGCTGTCGT TTTGATGGAGGAGGTGGGTGT TCCAATAGAG 37963 205 4.11e-09 GTATGGCGGC GGTGTTGAAGAGGGAGAGTGA AGAGAGGCAG 2555 228 1.37e-08 TGGTGGCTCT TGTGTTGGCGGTGGTGGGTGA GCTGCTTCCG 16303 198 1.26e-07 GGTTGTGTTG TTTGATGGAGCAGGAGGTGGT ATGTATGTAG 12836 362 1.94e-07 ATTCGATTGG TATGCAGGAGGAGGAGAGAGA GAGAGGATGA 264122 405 3.41e-07 CTAATAGCAA TCAGAAGGAGTTTGGAGCTGA GGGATCCAGC 1971 119 3.41e-07 CACGAATGGA TGTGTAGAATTAGGTGTTTGA TGACAATGAG 25284 319 4.27e-07 CGTACTTGTT GTTGTTGGAGAGTGAAGATGT GCACTATGCT 262287 355 8.46e-07 CTCCTCCGTT TGAGTTCAAAGATGAGAGTGA AAAAGCAGCA 11261 37 1.08e-06 TGTTTGAGCC GCTGGAGAAGAGGGCAGCGGA CGGTGTTGGT 37362 131 1.91e-06 CATGGTGTAC TGTGGAGAAATGTTGGGCAGA GCTGCAAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 36275 2.1e-10 270_[+3]_209 261466 1.9e-09 88_[+3]_391 37963 4.1e-09 204_[+3]_275 2555 1.4e-08 227_[+3]_252 16303 1.3e-07 197_[+3]_282 12836 1.9e-07 361_[+3]_118 264122 3.4e-07 404_[+3]_75 1971 3.4e-07 118_[+3]_361 25284 4.3e-07 318_[+3]_161 262287 8.5e-07 354_[+3]_125 11261 1.1e-06 36_[+3]_443 37362 1.9e-06 130_[+3]_349 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=12 36275 ( 271) TTTGAAGAAGTTGGAGGCTGA 1 261466 ( 89) TTTGATGGAGGAGGTGGGTGT 1 37963 ( 205) GGTGTTGAAGAGGGAGAGTGA 1 2555 ( 228) TGTGTTGGCGGTGGTGGGTGA 1 16303 ( 198) TTTGATGGAGCAGGAGGTGGT 1 12836 ( 362) TATGCAGGAGGAGGAGAGAGA 1 264122 ( 405) TCAGAAGGAGTTTGGAGCTGA 1 1971 ( 119) TGTGTAGAATTAGGTGTTTGA 1 25284 ( 319) GTTGTTGGAGAGTGAAGATGT 1 262287 ( 355) TGAGTTCAAAGATGAGAGTGA 1 11261 ( 37) GCTGGAGAAGAGGGCAGCGGA 1 37362 ( 131) TGTGGAGAAATGTTGGGCAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 12960 bayes= 9.73409 E= 2.1e+000 -1023 -1023 0 153 -165 -46 74 36 -65 -1023 -1023 168 -1023 -1023 200 -1023 35 -146 -58 68 94 -1023 -1023 94 -1023 -146 188 -1023 94 -1023 100 -1023 181 -146 -1023 -1023 -65 -1023 159 -164 -6 -146 42 36 67 -1023 42 -5 -1023 -1023 142 36 -1023 -1023 188 -164 94 -146 -58 -5 -6 -1023 159 -1023 -6 -1023 142 -164 -165 54 74 -64 -65 -1023 -58 136 -1023 -1023 200 -1023 152 -1023 -1023 -5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 12 E= 2.1e+000 0.000000 0.000000 0.250000 0.750000 0.083333 0.166667 0.416667 0.333333 0.166667 0.000000 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.333333 0.083333 0.166667 0.416667 0.500000 0.000000 0.000000 0.500000 0.000000 0.083333 0.916667 0.000000 0.500000 0.000000 0.500000 0.000000 0.916667 0.083333 0.000000 0.000000 0.166667 0.000000 0.750000 0.083333 0.250000 0.083333 0.333333 0.333333 0.416667 0.000000 0.333333 0.250000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.916667 0.083333 0.500000 0.083333 0.166667 0.250000 0.250000 0.000000 0.750000 0.000000 0.250000 0.000000 0.666667 0.083333 0.083333 0.333333 0.416667 0.166667 0.166667 0.000000 0.166667 0.666667 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [TG][GT]TG[TA][AT]G[AG]AG[GTA][AGT][GT]G[AT][GA][GA][GC]TG[AT] -------------------------------------------------------------------------------- Time 18.67 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10815 2.04e-02 300_[+2(6.69e-06)]_188 11261 1.92e-06 36_[+3(1.08e-06)]_78_[+1(2.98e-07)]_\ 345 11749 4.47e-02 500 12836 5.16e-05 168_[+2(1.00e-05)]_181_\ [+3(1.94e-07)]_118 16303 6.45e-10 147_[+1(9.82e-05)]_10_\ [+1(5.24e-10)]_[+3(1.26e-07)]_282 1971 2.09e-04 118_[+3(3.41e-07)]_361 20864 1.46e-01 429_[+2(2.62e-05)]_59 21733 6.88e-09 184_[+2(1.89e-05)]_101_\ [+1(8.29e-06)]_42_[+1(1.44e-11)]_121 21791 4.48e-05 293_[+1(1.77e-07)]_47_\ [+2(2.94e-05)]_128 22138 6.81e-05 131_[+1(4.82e-07)]_98_\ [+2(1.15e-05)]_239 24183 8.19e-02 465_[+2(3.27e-05)]_23 25284 1.98e-07 120_[+1(4.22e-07)]_178_\ [+3(4.27e-07)]_26_[+1(7.22e-05)]_89_[+2(4.08e-05)]_14 2555 3.69e-12 141_[+1(7.82e-11)]_66_\ [+3(1.37e-08)]_150_[+2(5.47e-05)]_90 261466 2.62e-07 35_[+3(2.01e-06)]_32_[+3(1.92e-09)]_\ 330_[+2(1.31e-05)]_49 262287 3.23e-07 96_[+3(6.43e-05)]_120_\ [+1(1.92e-07)]_97_[+3(8.46e-07)]_1_[+2(7.87e-05)]_112 263483 2.86e-03 472_[+2(1.04e-06)]_16 264122 3.56e-07 199_[+2(3.48e-07)]_193_\ [+3(3.41e-07)]_75 270069 3.90e-02 63_[+3(4.09e-05)]_416 36275 9.82e-07 270_[+3(2.10e-10)]_209 36372 2.86e-06 123_[+2(2.60e-07)]_210_\ [+1(5.49e-07)]_135 3655 1.66e-01 412_[+2(7.87e-05)]_76 37362 5.45e-08 14_[+1(9.31e-08)]_96_[+3(1.91e-06)]_\ 54_[+1(4.93e-05)]_226_[+2(1.00e-05)]_37 37963 5.31e-09 204_[+3(4.11e-09)]_44_\ [+1(3.43e-07)]_211 4576 1.02e-04 181_[+1(3.14e-08)]_299 5780 1.84e-01 319_[+2(4.51e-05)]_169 7480 4.18e-04 175_[+1(1.92e-07)]_237_\ [+1(1.59e-05)]_48 bd651 1.11e-01 62_[+2(9.37e-05)]_426 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************