******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/27/27.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10383 1.0000 500 11074 1.0000 500 11506 1.0000 500 1248 1.0000 500 15398 1.0000 500 20285 1.0000 500 21489 1.0000 500 22816 1.0000 500 22890 1.0000 500 22952 1.0000 500 23474 1.0000 500 23605 1.0000 500 24152 1.0000 500 25281 1.0000 500 25960 1.0000 500 30895 1.0000 500 31629 1.0000 500 33855 1.0000 500 37516 1.0000 500 4357 1.0000 500 4516 1.0000 500 7035 1.0000 500 7475 1.0000 500 873 1.0000 500 923 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/27/27.seqs.fa -oc motifs/27 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 25 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 12500 N= 25 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.260 C 0.241 G 0.236 T 0.264 Background letter frequencies (from dataset with add-one prior applied): A 0.260 C 0.241 G 0.236 T 0.264 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 20 sites = 24 llr = 261 E-value = 8.4e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 113929:663545:331971 pos.-specific C 54817:54332518149:18 probability G :3::2:2::3::::11:11: matrix T 43:::13:113:3153::11 bits 2.1 1.9 1.7 * 1.5 ** Relative 1.2 ** * * ** * Entropy 1.0 ** * * * ** * (15.7 bits) 0.8 **** * * * ** * 0.6 **** ** *** **** 0.4 * ******* *** **** 0.2 ******************** 0.0 -------------------- Multilevel CCCACACAAAACACTCCAAC consensus TGA TCCCTAT AA sequence T GC T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 7035 437 4.88e-10 TGACACCTCT CTCACACAACACACAACAAC TGAACCTCCT 15398 472 2.43e-09 GTCACCTTCA CGCACACACGTAACTCCAAC AATATCAAC 11506 471 2.43e-09 GTCACCTTCA CGCACACACGTAACTCCAAC AATATCAACA 4357 402 8.77e-09 CCAAATCTCA CACACACCACAATCTCCAAC GACGGGCGTC 23605 19 3.75e-07 ACTCTTTACA GCCACACCACCACCTCCAAC CTCTACAGGC 4516 479 1.23e-06 GACGTAAGCG TGCACACAAAGCAATCCAAC CA 23474 479 1.23e-06 CTCCCCTTCT CCCACAGACGACACGACGAC TA 20285 458 1.66e-06 CCACCACCCA CCAACACAAAAAACACAAGC CACCGTCCCC 37516 92 1.83e-06 AACGCAAGCG TCAAGAGCATACTCACCAAC GTCCAAAAAC 31629 434 1.83e-06 ACAGAGCCCT CGCAATCACATCTCTTCAAC TCATCCATCA 21489 318 1.83e-06 TTCTGGCTCT CTCAAATCACCCTCCTCAAC TCTTGATAGA 873 481 2.02e-06 CTTCAATCAT TCCACATCACAATCACAACC 11074 393 3.87e-06 TCATATTGTG CTAAAACATCACACTCCAAA AAGTAGCATA 25281 462 4.23e-06 CCATCGCAAC TCAACTCAACTCATAACAAC ACACTCTACT 923 475 6.52e-06 TTGCAAATCG ATCACATCCCACATCACAAC TTCAAG 10383 174 9.09e-06 CAACATTCGC ACCACGTACATCACTGCAAC GAACTCACCG 7475 410 1.16e-05 TTATTTTGTG TCCACATAAAAGCCAACAAT TTATCTCCGT 30895 53 1.16e-05 AAGTTCCACC TCCAAAGCAGTCTCGTCATC TTCGTCCCAC 33855 22 1.25e-05 TCGTGTTTGA CTACCACCAACATCTTCATC GCAGATTCAG 22952 312 2.46e-05 ACTTGTCTTC TGCAGACAATAACCACCACT TGAGACGAGG 24152 129 3.74e-05 ATTATTCATC CACCGATCAAACACGTCACC TATCACCTCG 25960 415 4.27e-05 CCATACTTGA TTCTCAACTGTAACTTCAAC TCCTCTTCAA 22890 87 6.31e-05 CGCCGCCGAG AGAACAGACGCCTTTACAGC TGATTGCGAA 22816 220 8.58e-05 AACTGAGCCA TGCAGACATACAACAGCGAA AACATCCTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 7035 4.9e-10 436_[+1]_44 15398 2.4e-09 471_[+1]_9 11506 2.4e-09 470_[+1]_10 4357 8.8e-09 401_[+1]_79 23605 3.8e-07 18_[+1]_462 4516 1.2e-06 478_[+1]_2 23474 1.2e-06 478_[+1]_2 20285 1.7e-06 457_[+1]_23 37516 1.8e-06 91_[+1]_389 31629 1.8e-06 433_[+1]_47 21489 1.8e-06 317_[+1]_163 873 2e-06 480_[+1] 11074 3.9e-06 392_[+1]_88 25281 4.2e-06 461_[+1]_19 923 6.5e-06 474_[+1]_6 10383 9.1e-06 173_[+1]_307 7475 1.2e-05 409_[+1]_71 30895 1.2e-05 52_[+1]_428 33855 1.3e-05 21_[+1]_459 22952 2.5e-05 311_[+1]_169 24152 3.7e-05 128_[+1]_352 25960 4.3e-05 414_[+1]_66 22890 6.3e-05 86_[+1]_394 22816 8.6e-05 219_[+1]_261 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=20 seqs=24 7035 ( 437) CTCACACAACACACAACAAC 1 15398 ( 472) CGCACACACGTAACTCCAAC 1 11506 ( 471) CGCACACACGTAACTCCAAC 1 4357 ( 402) CACACACCACAATCTCCAAC 1 23605 ( 19) GCCACACCACCACCTCCAAC 1 4516 ( 479) TGCACACAAAGCAATCCAAC 1 23474 ( 479) CCCACAGACGACACGACGAC 1 20285 ( 458) CCAACACAAAAAACACAAGC 1 37516 ( 92) TCAAGAGCATACTCACCAAC 1 31629 ( 434) CGCAATCACATCTCTTCAAC 1 21489 ( 318) CTCAAATCACCCTCCTCAAC 1 873 ( 481) TCCACATCACAATCACAACC 1 11074 ( 393) CTAAAACATCACACTCCAAA 1 25281 ( 462) TCAACTCAACTCATAACAAC 1 923 ( 475) ATCACATCCCACATCACAAC 1 10383 ( 174) ACCACGTACATCACTGCAAC 1 7475 ( 410) TCCACATAAAAGCCAACAAT 1 30895 ( 53) TCCAAAGCAGTCTCGTCATC 1 33855 ( 22) CTACCACCAACATCTTCATC 1 22952 ( 312) TGCAGACAATAACCACCACT 1 24152 ( 129) CACCGATCAAACACGTCACC 1 25960 ( 415) TTCTCAACTGTAACTTCAAC 1 22890 ( 87) AGAACAGACGCCTTTACAGC 1 22816 ( 220) TGCAGACATACAACAGCGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 12025 bayes= 9.41413 E= 8.4e-009 -106 93 -250 51 -164 64 31 -8 -6 164 -1123 -1123 175 -153 -1123 -266 -64 147 -50 -1123 175 -1123 -250 -166 -264 117 -50 -8 117 79 -1123 -1123 117 28 -1123 -108 36 47 8 -166 82 -21 -250 15 68 117 -250 -1123 106 -94 -1123 34 -264 179 -1123 -108 36 -153 -92 80 -6 79 -150 -8 -164 193 -1123 -1123 182 -1123 -150 -1123 145 -94 -150 -166 -164 179 -1123 -166 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 24 E= 8.4e-009 0.125000 0.458333 0.041667 0.375000 0.083333 0.375000 0.291667 0.250000 0.250000 0.750000 0.000000 0.000000 0.875000 0.083333 0.000000 0.041667 0.166667 0.666667 0.166667 0.000000 0.875000 0.000000 0.041667 0.083333 0.041667 0.541667 0.166667 0.250000 0.583333 0.416667 0.000000 0.000000 0.583333 0.291667 0.000000 0.125000 0.333333 0.333333 0.250000 0.083333 0.458333 0.208333 0.041667 0.291667 0.416667 0.541667 0.041667 0.000000 0.541667 0.125000 0.000000 0.333333 0.041667 0.833333 0.000000 0.125000 0.333333 0.083333 0.125000 0.458333 0.250000 0.416667 0.083333 0.250000 0.083333 0.916667 0.000000 0.000000 0.916667 0.000000 0.083333 0.000000 0.708333 0.125000 0.083333 0.083333 0.083333 0.833333 0.000000 0.083333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CT][CGT][CA]ACA[CT][AC][AC][ACG][ATC][CA][AT]C[TA][CAT]CAAC -------------------------------------------------------------------------------- Time 5.32 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 16 sites = 8 llr = 121 E-value = 8.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A ::1:5:3::8::a:49 pos.-specific C :a114:4::33::1:: probability G 5:591a1aa:6a:961 matrix T 5:3:::3:::1::::: bits 2.1 * * ** * 1.9 * * ** ** 1.7 * * ** ** 1.5 * * * ** *** * Relative 1.2 * * * *** *** * Entropy 1.0 ** * * *** ***** (21.8 bits) 0.8 ** * * ********* 0.6 ** *** ********* 0.4 ** *** ********* 0.2 ****** ********* 0.0 ---------------- Multilevel GCGGAGCGGAGGAGGA consensus T T C A CC A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 23605 187 1.42e-10 TGCTTCTTGG GCGGAGCGGAGGAGGA ATTGTTGGGA 25960 242 1.79e-08 CTTGGAAATT GCCGAGAGGAGGAGGA TGCCCTGCAG 7035 379 7.14e-08 CCCCTTCTTT TCGGAGCGGACGACGA CCAGACGAAG 10383 369 7.14e-08 GACGTTTAGG TCGCAGCGGACGAGGA CCTTTTTACC 15398 155 7.83e-08 ACAACCTCAC TCTGCGTGGCGGAGAA ACTTGATCGG 11506 154 7.83e-08 ACAACCTCAC TCTGCGTGGCGGAGAA ACTTGATCGG 4516 338 2.16e-07 AGAACGGATG GCGGGGGGGATGAGGA GACGGAAGTT 30895 451 2.87e-07 AACCGACGTC GCAGCGAGGAGGAGAG AGGTAGCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 23605 1.4e-10 186_[+2]_298 25960 1.8e-08 241_[+2]_243 7035 7.1e-08 378_[+2]_106 10383 7.1e-08 368_[+2]_116 15398 7.8e-08 154_[+2]_330 11506 7.8e-08 153_[+2]_331 4516 2.2e-07 337_[+2]_147 30895 2.9e-07 450_[+2]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=16 seqs=8 23605 ( 187) GCGGAGCGGAGGAGGA 1 25960 ( 242) GCCGAGAGGAGGAGGA 1 7035 ( 379) TCGGAGCGGACGACGA 1 10383 ( 369) TCGCAGCGGACGAGGA 1 15398 ( 155) TCTGCGTGGCGGAGAA 1 11506 ( 154) TCTGCGTGGCGGAGAA 1 4516 ( 338) GCGGGGGGGATGAGGA 1 30895 ( 451) GCAGCGAGGAGGAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 12125 bayes= 10.5647 E= 8.6e-003 -965 -965 108 92 -965 205 -965 -965 -105 -94 108 -8 -965 -94 189 -965 94 64 -92 -965 -965 -965 208 -965 -6 64 -92 -8 -965 -965 208 -965 -965 -965 208 -965 153 5 -965 -965 -965 5 140 -107 -965 -965 208 -965 194 -965 -965 -965 -965 -94 189 -965 53 -965 140 -965 175 -965 -92 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 8 E= 8.6e-003 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.125000 0.125000 0.500000 0.250000 0.000000 0.125000 0.875000 0.000000 0.500000 0.375000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.375000 0.125000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 0.250000 0.625000 0.125000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.375000 0.000000 0.625000 0.000000 0.875000 0.000000 0.125000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [GT]C[GT]G[AC]G[CAT]GG[AC][GC]GAG[GA]A -------------------------------------------------------------------------------- Time 10.44 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 12 sites = 24 llr = 210 E-value = 6.9e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A ::7332::7::7 pos.-specific C ::321:3:::1: probability G 39:25:281:92 matrix T 81:4:8522a:1 bits 2.1 1.9 * 1.7 * 1.5 * * ** Relative 1.2 ** * * ** Entropy 1.0 *** * * ** (12.6 bits) 0.8 *** * ***** 0.6 *** ******** 0.4 *** ******** 0.2 *** ******** 0.0 ------------ Multilevel TGATGTTGATGA consensus G CAAAC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 923 44 6.99e-08 ACAGTTGACT TGATGTTGATGA GAGTGCAGTG 23474 157 1.24e-06 CCATGTTGTG TGACGTCGATGA TGTAGTACTG 1248 424 1.24e-06 ACGGTCTCAC TGATGTTGTTGA GGGGTGGACC 22890 388 1.51e-06 GCAGGATGGT TGATGTTGATGG CTGCCGATGA 25960 109 2.08e-06 TTTCGGCCGA GGATGTCGATGA CTGCAGTTGG 30895 236 6.48e-06 GTCTTGGGTG TGCAGTTGATGG CTTTGCATCT 11074 29 9.92e-06 TGCGTTGTTT TGAAGAGGATGA CAATTAATAA 23605 264 1.10e-05 GGCCTCTTCC TGACATTGTTGA TGTGCGTTGT 33855 247 1.25e-05 GAACAACTAA TGCGGATGATGA TGCCGTCGCC 25281 213 1.38e-05 CACGGGCCGC TGCTCTCGATGA ACGCGTCGAC 24152 85 2.18e-05 TGGAACAGGA TGACAACGATGA CAGTGACTTG 22952 378 2.41e-05 GAGGGAGAGG GGAGCTTGATGA TCCATCACGT 22816 187 4.33e-05 ACAGATGGAT TGATGTTTGTGA ATGCCGATAT 20285 25 4.33e-05 CTAATTAGAA TGAGATCGATCA CGTCATGGTT 31629 98 5.12e-05 ACGCAGTTTG TGAAGTCGATCG TTTCTGTCGC 4516 8 5.54e-05 GATGATG TGCTCTTGATGT GGTTTCTACT 7475 44 6.58e-05 GTAGTGACTT GGAAGATTATGA CGAGGAGAGA 21489 53 6.58e-05 GAGCCTATTC GTCTGTTGATGA TTGGGCTGGA 37516 378 8.44e-05 ATTTGGTGCA TGCTGTTGGTGT GGCGTGTGTT 15398 38 2.19e-04 GGTCCTATTC GGAAATGTTTGA ATTCGCAGCT 11506 37 2.19e-04 GGTCCTATTC GGAAATGTTTGA ATTCGCAGCT 7035 245 2.45e-04 GTTATGCAAC TCAAATTGATCA GTTTACCGTG 10383 437 2.60e-04 AGCATTTTGT TGCCATGGTTGT TGTTTGGTGT 4357 221 3.97e-04 CTATCTCAAT TTAGAACGATGG ACACTCTCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 923 7e-08 43_[+3]_445 23474 1.2e-06 156_[+3]_332 1248 1.2e-06 423_[+3]_65 22890 1.5e-06 387_[+3]_101 25960 2.1e-06 108_[+3]_380 30895 6.5e-06 235_[+3]_253 11074 9.9e-06 28_[+3]_460 23605 1.1e-05 263_[+3]_225 33855 1.2e-05 246_[+3]_242 25281 1.4e-05 212_[+3]_276 24152 2.2e-05 84_[+3]_404 22952 2.4e-05 377_[+3]_111 22816 4.3e-05 186_[+3]_302 20285 4.3e-05 24_[+3]_464 31629 5.1e-05 97_[+3]_391 4516 5.5e-05 7_[+3]_481 7475 6.6e-05 43_[+3]_445 21489 6.6e-05 52_[+3]_436 37516 8.4e-05 377_[+3]_111 15398 0.00022 37_[+3]_451 11506 0.00022 36_[+3]_452 7035 0.00025 244_[+3]_244 10383 0.00026 436_[+3]_52 4357 0.0004 220_[+3]_268 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=12 seqs=24 923 ( 44) TGATGTTGATGA 1 23474 ( 157) TGACGTCGATGA 1 1248 ( 424) TGATGTTGTTGA 1 22890 ( 388) TGATGTTGATGG 1 25960 ( 109) GGATGTCGATGA 1 30895 ( 236) TGCAGTTGATGG 1 11074 ( 29) TGAAGAGGATGA 1 23605 ( 264) TGACATTGTTGA 1 33855 ( 247) TGCGGATGATGA 1 25281 ( 213) TGCTCTCGATGA 1 24152 ( 85) TGACAACGATGA 1 22952 ( 378) GGAGCTTGATGA 1 22816 ( 187) TGATGTTTGTGA 1 20285 ( 25) TGAGATCGATCA 1 31629 ( 98) TGAAGTCGATCG 1 4516 ( 8) TGCTCTTGATGT 1 7475 ( 44) GGAAGATTATGA 1 21489 ( 53) GTCTGTTGATGA 1 37516 ( 378) TGCTGTTGGTGT 1 15398 ( 38) GGAAATGTTTGA 1 11506 ( 37) GGAAATGTTTGA 1 7035 ( 245) TCAAATTGATCA 1 10383 ( 437) TGCCATGGTTGT 1 4357 ( 221) TTAGAACGATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 12225 bayes= 9.43796 E= 6.9e-002 -1123 -1123 8 151 -1123 -253 189 -166 145 28 -1123 -1123 17 -53 -50 51 36 -94 120 -1123 -32 -1123 -1123 159 -1123 28 -50 104 -1123 -1123 182 -66 145 -1123 -150 -34 -1123 -1123 -1123 192 -1123 -94 189 -1123 145 -1123 -50 -108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 24 E= 6.9e-002 0.000000 0.000000 0.250000 0.750000 0.000000 0.041667 0.875000 0.083333 0.708333 0.291667 0.000000 0.000000 0.291667 0.166667 0.166667 0.375000 0.333333 0.125000 0.541667 0.000000 0.208333 0.000000 0.000000 0.791667 0.000000 0.291667 0.166667 0.541667 0.000000 0.000000 0.833333 0.166667 0.708333 0.000000 0.083333 0.208333 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.875000 0.000000 0.708333 0.000000 0.166667 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [TG]G[AC][TA][GA][TA][TC]G[AT]TGA -------------------------------------------------------------------------------- Time 15.36 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10383 3.21e-06 173_[+1(9.09e-06)]_175_\ [+2(7.14e-08)]_116 11074 8.35e-05 28_[+3(9.92e-06)]_352_\ [+1(3.87e-06)]_88 11506 1.67e-09 153_[+2(7.83e-08)]_301_\ [+1(2.43e-09)]_10 1248 1.33e-02 423_[+3(1.24e-06)]_50_\ [+3(7.16e-06)]_3 15398 1.67e-09 154_[+2(7.83e-08)]_301_\ [+1(2.43e-09)]_9 20285 1.02e-03 24_[+3(4.33e-05)]_421_\ [+1(1.66e-06)]_23 21489 1.83e-03 52_[+3(6.58e-05)]_253_\ [+1(1.83e-06)]_163 22816 1.35e-02 186_[+3(4.33e-05)]_21_\ [+1(8.58e-05)]_261 22890 2.07e-04 86_[+1(6.31e-05)]_281_\ [+3(1.51e-06)]_1_[+3(8.44e-05)]_88 22952 2.65e-03 311_[+1(2.46e-05)]_46_\ [+3(2.41e-05)]_111 23474 3.91e-05 156_[+3(1.24e-06)]_310_\ [+1(1.23e-06)]_2 23605 3.28e-11 18_[+1(3.75e-07)]_148_\ [+2(1.42e-10)]_61_[+3(1.10e-05)]_225 24152 5.37e-03 84_[+3(2.18e-05)]_32_[+1(3.74e-05)]_\ 352 25281 8.16e-04 212_[+3(1.38e-05)]_237_\ [+1(4.23e-06)]_19 25960 4.95e-08 108_[+3(2.08e-06)]_45_\ [+3(9.73e-05)]_64_[+2(1.79e-08)]_157_[+1(4.27e-05)]_66 30895 5.31e-07 52_[+1(1.16e-05)]_163_\ [+3(6.48e-06)]_203_[+2(2.87e-07)]_34 31629 5.46e-04 97_[+3(5.12e-05)]_324_\ [+1(1.83e-06)]_47 33855 3.76e-04 21_[+1(1.25e-05)]_205_\ [+3(1.25e-05)]_242 37516 7.32e-04 91_[+1(1.83e-06)]_266_\ [+3(8.44e-05)]_111 4357 2.61e-05 56_[+1(9.02e-07)]_325_\ [+1(8.77e-09)]_79 4516 3.74e-07 7_[+3(5.54e-05)]_318_[+2(2.16e-07)]_\ 125_[+1(1.23e-06)]_2 7035 3.80e-10 378_[+2(7.14e-08)]_42_\ [+1(4.88e-10)]_44 7475 2.72e-03 43_[+3(6.58e-05)]_78_[+3(9.73e-05)]_\ 264_[+1(1.16e-05)]_71 873 1.68e-02 480_[+1(2.02e-06)] 923 1.26e-05 43_[+3(6.99e-08)]_419_\ [+1(6.52e-06)]_6 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************