******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/29/29.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10647 1.0000 500 1136 1.0000 500 1155 1.0000 500 11739 1.0000 500 11789 1.0000 500 12030 1.0000 500 13134 1.0000 500 14192 1.0000 500 1724 1.0000 500 1738 1.0000 500 17443 1.0000 500 1754 1.0000 500 17704 1.0000 500 1786 1.0000 500 2036 1.0000 500 21042 1.0000 500 21250 1.0000 500 21300 1.0000 500 225 1.0000 500 22527 1.0000 500 22689 1.0000 500 23278 1.0000 500 23390 1.0000 500 24700 1.0000 500 24876 1.0000 500 25361 1.0000 500 25787 1.0000 500 260962 1.0000 500 261284 1.0000 500 26131 1.0000 500 262032 1.0000 500 262056 1.0000 500 263180 1.0000 500 264714 1.0000 500 268621 1.0000 500 268713 1.0000 500 270229 1.0000 500 270314 1.0000 500 270323 1.0000 500 30981 1.0000 500 31110 1.0000 500 31128 1.0000 500 31216 1.0000 500 31402 1.0000 500 32845 1.0000 500 3300 1.0000 500 33035 1.0000 500 3379 1.0000 500 33868 1.0000 500 3435 1.0000 500 34543 1.0000 500 34864 1.0000 500 36431 1.0000 500 38512 1.0000 500 3853 1.0000 500 38608 1.0000 500 3878 1.0000 500 39841 1.0000 500 40193 1.0000 500 4821 1.0000 500 4888 1.0000 500 5074 1.0000 500 5099 1.0000 500 6564 1.0000 500 6716 1.0000 500 6759 1.0000 500 8085 1.0000 500 866 1.0000 500 976 1.0000 500 bd1313 1.0000 500 bd1545 1.0000 500 bd2073 1.0000 500 ThpsCp001 1.0000 128 ThpsCp018 1.0000 500 ThpsCp019 1.0000 500 ThpsCp020 1.0000 500 ThpsCp021 1.0000 500 ThpsCp053 1.0000 500 ThpsCp054 1.0000 500 ThpsCp067 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/29/29.seqs.fa -oc motifs/29 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 80 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 39628 N= 80 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.268 C 0.221 G 0.224 T 0.287 Background letter frequencies (from dataset with add-one prior applied): A 0.268 C 0.221 G 0.224 T 0.287 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 80 llr = 665 E-value = 9.1e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 1:1:231:1132:22211:44 pos.-specific C :2:33::3:1:1:1::32131 probability G 54245153272193:82:923 matrix T 447315446156148157::2 bits 2.2 2.0 1.7 1.5 * Relative 1.3 * * Entropy 1.1 * ** * (12.0 bits) 0.9 * ** * 0.7 * * * ** ** 0.4 **** ******** ** ** 0.2 ********************* 0.0 --------------------- Multilevel GTTGGTGTTGTTGTTGTTGAA consensus TG TCATCG AA GA CC CG sequence C G G A GT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 25361 121 2.59e-08 TAACGATGAT GTTGGTGGTGGTGTTGCCGGG GTCAGTTCCG 5099 407 4.90e-08 CACCATCGGC GCTGATGCTGATGTTGTTGAG AAAGACAAAA 6759 43 7.32e-08 GCTGATTGCA TTGTGTTTTGTTGGTGTTGCG TTGAAGAGGT 3878 140 7.32e-08 CGGTGAGGTG GTAGCTGTTGATGATGCTGAA CTGCTTGGAG 261284 297 2.24e-07 GTTGCTTACG TGTGGTGTTGATGATGTCGAC ACGAAGGCAG 38512 146 2.67e-07 TATCATTGAC TTTGTTTTTGTAGTTGTTGCA AAGAGCTTCT 33035 111 2.67e-07 GGAGGTTGAC GTTGTTGTTGTTGCTGCTGCT GTGGCTGTTG 11789 124 3.75e-07 GGTTGGCGGC ATTGGAGGTGGAGGTGTTGCA TGGTGGGGTG 1136 327 5.22e-07 TTCTCTAATT TGTCGTTTGGTTGAAGTTGCG GTTGAGAGAG 262056 353 8.41e-07 GTCGTCAATT GGTGGTGGTGGCGCTGTTGAG GCGAAGACAC 38608 225 9.81e-07 GGTTGTTGTC GTGTCATCTGTTGATGTCGAA GCATGTGCTT 25787 224 9.81e-07 GGTTGTTGTC GTGTCATCTGTTGATGTCGAA GCATGTGCTT 31402 450 1.14e-06 AACACAAGTC TTTGGAGTTGATGAAATTGAA GCCGGACGTG 1754 239 1.54e-06 GTGTTGAGGG GTTGGATGTGGGGTTGTTGCC ACGATTATTG 5074 245 1.78e-06 CGGTGGCGGT GTTGCTGGAGGTGGTGGCGGA CACACCACGG 270323 12 2.72e-06 CAACGAACGG TGTGCATGAGTTGTTGCCGAT GGAGACGAGG 268621 245 2.72e-06 TCTCAACCCT GCTTGTGGGGGTGTTGCTCCA GTCATTGATC 11739 207 6.04e-06 TTTACAGGTT GTTGGTGCACTTGTTGTTGTG TCCAGAACTA ThpsCp054 42 6.86e-06 TTGGTTCTTT GCTCCTAGTTTTGGTGTTGCT GCTATTTTCC ThpsCp018 212 7.78e-06 ATCACAAAAA TCTTATATTGATGTTGTTGGT AAAACAAACC bd2073 234 7.78e-06 ATCACAAAAA TCTTATATTGATGTTGTTGGT AAAACAAACC 31216 249 9.96e-06 GGCAACGACG TTTGGTCGGCGTGGTGCTGCA ACTCAGCCAT 21250 253 1.12e-05 CGGATGTCAT TGTGGTGTGGTTTGTTTTGGG TAGAGTAGCG ThpsCp021 24 1.27e-05 ATTTACAGGG ATTGGTGCTGAAGTTACAGAA CAAGTTGAAT ThpsCp019 376 1.27e-05 ATTTACAGGG ATTGGTGCTGAAGTTACAGAA CAAGTTGAAT bd1313 23 1.27e-05 ATTTACAGGG ATTGGTGCTGAAGTTACAGAA CAAGTTGAAT 22527 89 1.27e-05 TCTGACGGTG TCGTGTTCGGTTGGTGATGAT AGTTGTTGTG ThpsCp067 239 1.43e-05 TTTTAAAAGA GCTCGAGTTAATGATGATGAA GTAATAGGTG 270229 389 1.80e-05 TGTTAGTTTG TGACGTGTTGAAGGAGCCGAT TGTACGTAGG 26131 295 1.80e-05 TGTTAGTTTG TGACGTGTTGAAGGAGCCGAT TGTACGTAGG 12030 163 1.80e-05 TGGAGGAGGC GGGTGGTCTGGTGGTGCTGTG TCGGTGCTCG 6564 36 2.01e-05 TCTCCTTTTC GGATCGTCTCTTGATGTTGCG AGTGGTTGAT 2036 111 2.01e-05 GACAATTGAG GTTCTTTTTGTTGGTATTCGG TCTTGAAGCT 17704 261 2.01e-05 ATGGTGCTGT GTTGGGGCAAATGATGCTGCT GATGCAGCGA 33868 377 2.81e-05 CGACTGCCTC GTTCCATTGCTTGTTGCTCCT CCGCAAACAC 39841 143 3.88e-05 GTGTGCTTAT TATGCTTCTCATGGTGCTGCG GTGATATTAG 31128 203 3.88e-05 GCAGACATCA TGATCTGGTTTTGGAGTTGGG TATCGCCAGA 24700 164 5.30e-05 TTGTTATTAC AGTGGTACTGGTGTATTTGAG AGCTGATCCG 22689 340 5.30e-05 CAGGAGAACA TGGTCGGCTGATTTTGTTGGT TCGATGAAGT 21042 56 5.30e-05 ACGAGTTGAT GGGTGTGTTGTATTTGGAGGA TGCTTTGCCC 866 124 5.86e-05 GGGGGAGATT TTTCGTGGTTTCGTTTTTGAG TGTTCTTGGC 270314 195 5.86e-05 CTGGAGCGGG AGGGCGGTTGTTGATTTTGGG AGAGAGACCG 225 247 5.86e-05 ATCCTCTTTA GTGCTATGTGTTGTTGTAGGC AGTGGCCAAA 14192 196 5.86e-05 CTGGAGCGGG AGGGCGGTTGTTGATTTTGGG AGAGAGACCG 36431 299 6.48e-05 TATCATGTGC TTTGCTTGGATAGATACTGCA GTTCATTCGC 32845 119 6.48e-05 GCGGTACCAC ATTGGATTGTGCGTTGCTGCA CGATGTGCCT 4888 7 7.89e-05 AAGACG GGTCATTTGGATGCTGCTACA ACTCAATCAA 6716 475 8.69e-05 GTTCGGCAGT TGTCGTTGTGTTGCAGTCCCT TGACA 21300 370 8.69e-05 ACCAAGAGGG GTTGGAAGGGTGTGTGGTGGT GGCCAGCAAG 34543 107 9.56e-05 TGTTGCTGTG TCTTGAGGAGTACTTGCTGCA GCCTTGTGGC 3379 37 9.56e-05 CGGAACTGTT ATTTGTATTGTTGGAATCGGT ACTGTTAATC ThpsCp053 202 1.05e-04 CTTTTTATAT GTACAAACGGATGATATTGCA TAAATTTTAA bd1545 157 1.05e-04 CTTTTTATAT GTACAAACGGATGATATTGCA TAAATTTTAA 264714 23 1.05e-04 TGCATGTCAA GGTTGTGTCCGGGTTGGTGGA TGCAAAAAGT 23390 131 1.05e-04 TTCGCGAGTC TTTGAAGTTGCAGTTGATGAG CATTGACGCA 263180 146 1.15e-04 GGCGTCAATG GGTGATGTAGTATTTGGAGAG GAGCCTACGG 1724 162 1.15e-04 GACGTAGGAA TCCCATTCTCATGTTGCTGAA TCGAGATGGC 31110 307 1.27e-04 GACTTTGTTA CTTCCGGCAGAAGATGGTGAA TCAAGATATG 268713 90 1.27e-04 ATGTCGAAAA TTGGCTGTTGGAGCTGCTCCC CCATGCCGCC 1738 201 1.27e-04 TGACGAGTCT GGTGGGTCGAGAGGAGGTGAA GAGTATTGTA 3300 227 1.52e-04 GATGAAAGCT GCTTGAGCGGTGGGTATTAAG AGGAGGAGGG 1155 427 1.81e-04 TGAGGGTGAC GCTGTCATTGTCGGTGTTGCA TTTCAGCCAA 976 234 2.16e-04 ATGAGTGGCT TGTGTATGTCTGGATAGTGCA GAATGTGTGT 34864 66 2.35e-04 TATTACGTGC GTTCCACGCGTCGGTGCTGAT TCAGCTCTAG 3435 225 2.35e-04 CTACCTTCCC GTGTTAATTGTTTGTACTGAT TCCTACGAGT 260962 389 2.56e-04 AGCCAGCAAC GGAGGAGGAGGAGGAGGAGGA ACAACTCCCC 24876 391 2.78e-04 GATGATCAGG GGACAATTTGATTCTGTTGAC AAAGCTGTGT 10647 342 2.78e-04 AAGCGCCTCG TGCTGTGCGTTTGTAGTCGGA TAGGAGCGTT 4821 235 3.28e-04 AACTTCATAC CCTCCATGAGATGTTGCTCGA CAGCTACGAT 3853 47 3.28e-04 GCTTTTGATA GCTCGAGGTCTTTGAGGCGAC TTTGAAGCTC 17443 123 3.86e-04 GATTTGAGGA GGTTGAGTGTTTCGAGCCGAT CGTATCTTGG ThpsCp020 126 4.51e-04 GTTCATAGAA TTTTAATTTATTTTTATTGAT TAATAGATAA 40193 180 4.51e-04 ATTAATCGTT TTGCCATCATTGGGTGGCGAA ACTCGTGTGG 262032 167 4.51e-04 GGCTGATGTT CGTCGTGCAGTGGAAGTTGTG AATTGTGGTT 13134 164 4.51e-04 GCTGGTATTC GCTCTTTCTGAAGATTCAGGT TGAAGGTAAC 8085 191 4.88e-04 TGGAGTTTGG GCTTCTCTTTGTTTTGTTGAC ACGAGCGAAC ThpsCp001 6 6.12e-04 ATAAA TTTTCTTTTTGAGAAAATGAA AAATCGTGTA 30981 353 7.09e-04 CAAGTTTCTG GGTGCGTCGCTTGGTGACACG GCGACGGTTG 23278 290 7.63e-04 CCATCTTCGC TGTTTGATTGTGGGAGGAGAG CGGGCGGGGA 1786 314 1.41e-03 TGCATCACCT TGAGAAGTGCGTGTTGACCCA TCACCTCACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 25361 2.6e-08 120_[+1]_359 5099 4.9e-08 406_[+1]_73 6759 7.3e-08 42_[+1]_437 3878 7.3e-08 139_[+1]_340 261284 2.2e-07 296_[+1]_183 38512 2.7e-07 145_[+1]_334 33035 2.7e-07 110_[+1]_369 11789 3.8e-07 123_[+1]_356 1136 5.2e-07 326_[+1]_153 262056 8.4e-07 352_[+1]_127 38608 9.8e-07 224_[+1]_255 25787 9.8e-07 223_[+1]_256 31402 1.1e-06 449_[+1]_30 1754 1.5e-06 238_[+1]_241 5074 1.8e-06 244_[+1]_235 270323 2.7e-06 11_[+1]_468 268621 2.7e-06 244_[+1]_235 11739 6e-06 206_[+1]_273 ThpsCp054 6.9e-06 41_[+1]_438 ThpsCp018 7.8e-06 211_[+1]_268 bd2073 7.8e-06 233_[+1]_246 31216 1e-05 248_[+1]_231 21250 1.1e-05 252_[+1]_227 ThpsCp021 1.3e-05 23_[+1]_456 ThpsCp019 1.3e-05 375_[+1]_104 bd1313 1.3e-05 22_[+1]_457 22527 1.3e-05 88_[+1]_391 ThpsCp067 1.4e-05 238_[+1]_241 270229 1.8e-05 388_[+1]_91 26131 1.8e-05 294_[+1]_185 12030 1.8e-05 162_[+1]_317 6564 2e-05 35_[+1]_444 2036 2e-05 110_[+1]_369 17704 2e-05 260_[+1]_219 33868 2.8e-05 376_[+1]_103 39841 3.9e-05 142_[+1]_337 31128 3.9e-05 202_[+1]_277 24700 5.3e-05 163_[+1]_316 22689 5.3e-05 339_[+1]_140 21042 5.3e-05 55_[+1]_424 866 5.9e-05 123_[+1]_356 270314 5.9e-05 194_[+1]_285 225 5.9e-05 246_[+1]_233 14192 5.9e-05 195_[+1]_284 36431 6.5e-05 298_[+1]_181 32845 6.5e-05 118_[+1]_361 4888 7.9e-05 6_[+1]_473 6716 8.7e-05 474_[+1]_5 21300 8.7e-05 369_[+1]_110 34543 9.6e-05 106_[+1]_373 3379 9.6e-05 36_[+1]_443 ThpsCp053 0.00011 201_[+1]_278 bd1545 0.00011 156_[+1]_323 264714 0.00011 22_[+1]_457 23390 0.00011 130_[+1]_349 263180 0.00012 145_[+1]_334 1724 0.00012 161_[+1]_318 31110 0.00013 306_[+1]_173 268713 0.00013 89_[+1]_390 1738 0.00013 200_[+1]_279 3300 0.00015 226_[+1]_253 1155 0.00018 426_[+1]_53 976 0.00022 233_[+1]_246 34864 0.00024 65_[+1]_414 3435 0.00024 224_[+1]_255 260962 0.00026 388_[+1]_91 24876 0.00028 390_[+1]_89 10647 0.00028 341_[+1]_138 4821 0.00033 234_[+1]_245 3853 0.00033 46_[+1]_433 17443 0.00039 122_[+1]_357 ThpsCp020 0.00045 125_[+1]_354 40193 0.00045 179_[+1]_300 262032 0.00045 166_[+1]_313 13134 0.00045 163_[+1]_316 8085 0.00049 190_[+1]_289 ThpsCp001 0.00061 5_[+1]_102 30981 0.00071 352_[+1]_127 23278 0.00076 289_[+1]_190 1786 0.0014 313_[+1]_166 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=80 25361 ( 121) GTTGGTGGTGGTGTTGCCGGG 1 5099 ( 407) GCTGATGCTGATGTTGTTGAG 1 6759 ( 43) TTGTGTTTTGTTGGTGTTGCG 1 3878 ( 140) GTAGCTGTTGATGATGCTGAA 1 261284 ( 297) TGTGGTGTTGATGATGTCGAC 1 38512 ( 146) TTTGTTTTTGTAGTTGTTGCA 1 33035 ( 111) GTTGTTGTTGTTGCTGCTGCT 1 11789 ( 124) ATTGGAGGTGGAGGTGTTGCA 1 1136 ( 327) TGTCGTTTGGTTGAAGTTGCG 1 262056 ( 353) GGTGGTGGTGGCGCTGTTGAG 1 38608 ( 225) GTGTCATCTGTTGATGTCGAA 1 25787 ( 224) GTGTCATCTGTTGATGTCGAA 1 31402 ( 450) TTTGGAGTTGATGAAATTGAA 1 1754 ( 239) GTTGGATGTGGGGTTGTTGCC 1 5074 ( 245) GTTGCTGGAGGTGGTGGCGGA 1 270323 ( 12) TGTGCATGAGTTGTTGCCGAT 1 268621 ( 245) GCTTGTGGGGGTGTTGCTCCA 1 11739 ( 207) GTTGGTGCACTTGTTGTTGTG 1 ThpsCp054 ( 42) GCTCCTAGTTTTGGTGTTGCT 1 ThpsCp018 ( 212) TCTTATATTGATGTTGTTGGT 1 bd2073 ( 234) TCTTATATTGATGTTGTTGGT 1 31216 ( 249) TTTGGTCGGCGTGGTGCTGCA 1 21250 ( 253) TGTGGTGTGGTTTGTTTTGGG 1 ThpsCp021 ( 24) ATTGGTGCTGAAGTTACAGAA 1 ThpsCp019 ( 376) ATTGGTGCTGAAGTTACAGAA 1 bd1313 ( 23) ATTGGTGCTGAAGTTACAGAA 1 22527 ( 89) TCGTGTTCGGTTGGTGATGAT 1 ThpsCp067 ( 239) GCTCGAGTTAATGATGATGAA 1 270229 ( 389) TGACGTGTTGAAGGAGCCGAT 1 26131 ( 295) TGACGTGTTGAAGGAGCCGAT 1 12030 ( 163) GGGTGGTCTGGTGGTGCTGTG 1 6564 ( 36) GGATCGTCTCTTGATGTTGCG 1 2036 ( 111) GTTCTTTTTGTTGGTATTCGG 1 17704 ( 261) GTTGGGGCAAATGATGCTGCT 1 33868 ( 377) GTTCCATTGCTTGTTGCTCCT 1 39841 ( 143) TATGCTTCTCATGGTGCTGCG 1 31128 ( 203) TGATCTGGTTTTGGAGTTGGG 1 24700 ( 164) AGTGGTACTGGTGTATTTGAG 1 22689 ( 340) TGGTCGGCTGATTTTGTTGGT 1 21042 ( 56) GGGTGTGTTGTATTTGGAGGA 1 866 ( 124) TTTCGTGGTTTCGTTTTTGAG 1 270314 ( 195) AGGGCGGTTGTTGATTTTGGG 1 225 ( 247) GTGCTATGTGTTGTTGTAGGC 1 14192 ( 196) AGGGCGGTTGTTGATTTTGGG 1 36431 ( 299) TTTGCTTGGATAGATACTGCA 1 32845 ( 119) ATTGGATTGTGCGTTGCTGCA 1 4888 ( 7) GGTCATTTGGATGCTGCTACA 1 6716 ( 475) TGTCGTTGTGTTGCAGTCCCT 1 21300 ( 370) GTTGGAAGGGTGTGTGGTGGT 1 34543 ( 107) TCTTGAGGAGTACTTGCTGCA 1 3379 ( 37) ATTTGTATTGTTGGAATCGGT 1 ThpsCp053 ( 202) GTACAAACGGATGATATTGCA 1 bd1545 ( 157) GTACAAACGGATGATATTGCA 1 264714 ( 23) GGTTGTGTCCGGGTTGGTGGA 1 23390 ( 131) TTTGAAGTTGCAGTTGATGAG 1 263180 ( 146) GGTGATGTAGTATTTGGAGAG 1 1724 ( 162) TCCCATTCTCATGTTGCTGAA 1 31110 ( 307) CTTCCGGCAGAAGATGGTGAA 1 268713 ( 90) TTGGCTGTTGGAGCTGCTCCC 1 1738 ( 201) GGTGGGTCGAGAGGAGGTGAA 1 3300 ( 227) GCTTGAGCGGTGGGTATTAAG 1 1155 ( 427) GCTGTCATTGTCGGTGTTGCA 1 976 ( 234) TGTGTATGTCTGGATAGTGCA 1 34864 ( 66) GTTCCACGCGTCGGTGCTGAT 1 3435 ( 225) GTGTTAATTGTTTGTACTGAT 1 260962 ( 389) GGAGGAGGAGGAGGAGGAGGA 1 24876 ( 391) GGACAATTTGATTCTGTTGAC 1 10647 ( 342) TGCTGTGCGTTTGTAGTCGGA 1 4821 ( 235) CCTCCATGAGATGTTGCTCGA 1 3853 ( 47) GCTCGAGGTCTTTGAGGCGAC 1 17443 ( 123) GGTTGAGTGTTTCGAGCCGAT 1 ThpsCp020 ( 126) TTTTAATTTATTTTTATTGAT 1 40193 ( 180) TTGCCATCATTGGGTGGCGAA 1 262032 ( 167) CGTCGTGCAGTGGAAGTTGTG 1 13134 ( 164) GCTCTTTCTGAAGATTCAGGT 1 8085 ( 191) GCTTCTCTTTGTTTTGTTGAC 1 ThpsCp001 ( 6) TTTTCTTTTTGAGAAAATGAA 1 30981 ( 353) GGTGCGTCGCTTGGTGACACG 1 23278 ( 290) TGTTTGATTGTGGGAGGAGAG 1 1786 ( 314) TGAGAAGTGCGTGTTGACCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 38028 bayes= 8.88981 E= 9.1e-019 -125 -256 109 39 -442 -24 70 61 -110 -314 -46 126 -1297 31 97 0 -84 31 105 -135 33 -414 -84 87 -96 -256 109 29 -1297 50 23 57 -96 -314 1 109 -210 -68 162 -135 10 -414 -7 76 -25 -182 -116 109 -1297 -314 193 -120 -18 -156 54 34 -42 -1297 -1297 148 -62 -1297 174 -193 -184 56 -58 65 -125 -14 -1297 126 -284 -134 197 -1297 62 50 9 -293 58 -134 30 -27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 80 E= 9.1e-019 0.112500 0.037500 0.475000 0.375000 0.012500 0.187500 0.362500 0.437500 0.125000 0.025000 0.162500 0.687500 0.000000 0.275000 0.437500 0.287500 0.150000 0.275000 0.462500 0.112500 0.337500 0.012500 0.125000 0.525000 0.137500 0.037500 0.475000 0.350000 0.000000 0.312500 0.262500 0.425000 0.137500 0.025000 0.225000 0.612500 0.062500 0.137500 0.687500 0.112500 0.287500 0.012500 0.212500 0.487500 0.225000 0.062500 0.100000 0.612500 0.000000 0.025000 0.850000 0.125000 0.237500 0.075000 0.325000 0.362500 0.200000 0.000000 0.000000 0.800000 0.175000 0.000000 0.750000 0.075000 0.075000 0.325000 0.150000 0.450000 0.112500 0.200000 0.000000 0.687500 0.037500 0.087500 0.875000 0.000000 0.412500 0.312500 0.237500 0.037500 0.400000 0.087500 0.275000 0.237500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [GT][TG]T[GTC][GC][TA][GT][TCG][TG]G[TAG][TA]G[TGA][TA]G[TC][TC]G[ACG][AGT] -------------------------------------------------------------------------------- Time 44.79 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 16 sites = 43 llr = 443 E-value = 4.9e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 27526a1665774926 pos.-specific C 62172:9:433:6:83 probability G 112::::::2:1:1:1 matrix T ::2:1::4:::1:::: bits 2.2 2.0 1.7 ** 1.5 ** * Relative 1.3 ** * Entropy 1.1 * ** * *** (14.9 bits) 0.9 * **** * *** 0.7 ** * ********** 0.4 ** ************* 0.2 **************** 0.0 ---------------- Multilevel CAACAACAAAAACACA consensus T C TCCC A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- ThpsCp018 18 5.32e-07 GATTTAGATG AAGCAACTCAAAAACA ATTAGCTCGT bd2073 40 5.32e-07 GATTTAGATG AAGCAACTCAAAAACA ATTAGCTCGT 3379 420 5.32e-07 CGACGTCGAC AAACAACAACCAAACC AAGCAAGCCG 33035 448 5.32e-07 ACCAATGATT CCAACACAACAACACA ACCGACCGAA ThpsCp021 82 1.00e-06 CTTGGTGATA AAACTACTAAAAAACA AGGTGCTGTA ThpsCp019 434 1.00e-06 CTTGGTGATA AAACTACTAAAAAACA AGGTGCTGTA bd1313 81 1.00e-06 CTTGGTGATA AAACTACTAAAAAACA AGGTGCTGTA 270314 422 1.27e-06 ACGCATTCCT CAGAAACACGCACACA CCAGCCGACA 14192 423 1.27e-06 ACGCATTCCT CAGAAACACGCACACA CCAGCCGACA 5099 251 1.42e-06 AAAATAATGT TAACAACAAAAGCACA GATCAACAAC 263180 453 1.42e-06 GGCAGACAAA CATCAACAACGACACC TCACACACCA 10647 240 1.42e-06 TCAACTTTGC CGCCAACACCAACACC TCGTCGATGC 262032 463 1.59e-06 CACCTCCTCA CCGCAACACCAACGCA CTCTTTGAAG 11739 229 1.78e-06 GTTGTTGTGT CCAGAACTACAACACA TTCTGACACT 33868 325 2.00e-06 TCACACGTGG AACCAACAAAAACAAA AGCTCACTTG 34864 447 2.23e-06 ACTGAATCAT CAACAACTCAAACCCG TATCAATTTT 12030 461 2.23e-06 CCTCACATCA CAACCACACACCAACA ATAGAGGCGG 21250 154 2.78e-06 TCAAGTCCGA CAACAACTCCCGCAAA AATTCCTCGT 260962 284 3.81e-06 TTGAACCTAC CATCAACAAAAGCACT CCCAATCGCT 17443 475 4.22e-06 CTAATCCATC CACCAGCAAGAACACA ATAGGACACA 11789 437 4.22e-06 CCATACTATC CATATACTAAAAAACA CAAGGACAAA 3878 375 4.67e-06 GATATTTATC GAACAAAAACCAAACA GACGTTCCCT 22689 159 4.67e-06 AGACAATCGT GCACCACAAACAAACC AGAGAGGCTC 1754 280 5.16e-06 CGAGAACTGC CCTCAACACCCCCACA AGAGGTGCGC 23278 480 6.30e-06 ACCCTCCATT CCACAACACAATCACT GCATC ThpsCp020 24 6.94e-06 TTAATTATTT CAAAGACTAAAAAACA GTTTGTAGTT 23390 424 6.94e-06 CACCTGCCAT CAGCCACAAAAGAACG ACAATCTGCC 3435 476 7.64e-06 CCCCACCCTC CTGCTACACAAACACC TCCCTCGAT 268621 28 7.64e-06 TTCCTATGAT CATGAACTCCAAAACC GTGGATCCCA 40193 362 8.39e-06 GTACCGATGC CAACAACAAAAACTAC TCAAAGTTGA 31216 18 9.21e-06 AGCCACTCGT CCACCAAAAAAACAAA CCATTCAATC 32845 168 1.01e-05 CGTGGAGTGT GGACAACACAATCACC CTGATGTGAC 39841 469 1.21e-05 GTCCGCCGCG GTTCAACTCAAACACC AAACGCCAAG 3300 12 1.33e-05 CGGCTCACCT CATCAACTCCCTCAAA ATCACCAAGA 25361 358 1.73e-05 CCACCAACGC CGAACACAAGCACACC GTATTGACAT 22527 157 1.88e-05 GATACATGAT CCACCAATCCAACAAA CGGATGTCTC ThpsCp054 235 2.04e-05 ACATTCCGTG CATTTACTCCAACACA ATCAGAAGAA 1786 91 2.22e-05 TTCGGTGTCA AAACAAATAGAACAAA GCTTCGTTCT 38512 482 3.08e-05 AGCAACAATC TACAAACAAGAAAACA GCA 13134 474 3.08e-05 TCGTTGATTT GAACCACACCCGCCCA TCTTACCAAC 270229 29 3.34e-05 CTTTTTGGCT GAAACACAAAATCACG CCCACCAATA 1738 262 3.34e-05 TTTGCGAAGG CAACAGCAACAAAGCG TTCCTTTTTC 36431 482 4.89e-05 CCAAATCCAT CATCAACAAGGAAGCC AAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- ThpsCp018 5.3e-07 17_[+2]_467 bd2073 5.3e-07 39_[+2]_445 3379 5.3e-07 419_[+2]_65 33035 5.3e-07 447_[+2]_37 ThpsCp021 1e-06 81_[+2]_403 ThpsCp019 1e-06 433_[+2]_51 bd1313 1e-06 80_[+2]_404 270314 1.3e-06 421_[+2]_63 14192 1.3e-06 422_[+2]_62 5099 1.4e-06 250_[+2]_234 263180 1.4e-06 452_[+2]_32 10647 1.4e-06 239_[+2]_245 262032 1.6e-06 462_[+2]_22 11739 1.8e-06 228_[+2]_256 33868 2e-06 324_[+2]_160 34864 2.2e-06 446_[+2]_38 12030 2.2e-06 460_[+2]_24 21250 2.8e-06 153_[+2]_331 260962 3.8e-06 283_[+2]_201 17443 4.2e-06 474_[+2]_10 11789 4.2e-06 436_[+2]_48 3878 4.7e-06 374_[+2]_110 22689 4.7e-06 158_[+2]_326 1754 5.2e-06 279_[+2]_205 23278 6.3e-06 479_[+2]_5 ThpsCp020 6.9e-06 23_[+2]_461 23390 6.9e-06 423_[+2]_61 3435 7.6e-06 475_[+2]_9 268621 7.6e-06 27_[+2]_457 40193 8.4e-06 361_[+2]_123 31216 9.2e-06 17_[+2]_467 32845 1e-05 167_[+2]_317 39841 1.2e-05 468_[+2]_16 3300 1.3e-05 11_[+2]_473 25361 1.7e-05 357_[+2]_127 22527 1.9e-05 156_[+2]_328 ThpsCp054 2e-05 234_[+2]_250 1786 2.2e-05 90_[+2]_394 38512 3.1e-05 481_[+2]_3 13134 3.1e-05 473_[+2]_11 270229 3.3e-05 28_[+2]_456 1738 3.3e-05 261_[+2]_223 36431 4.9e-05 481_[+2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=16 seqs=43 ThpsCp018 ( 18) AAGCAACTCAAAAACA 1 bd2073 ( 40) AAGCAACTCAAAAACA 1 3379 ( 420) AAACAACAACCAAACC 1 33035 ( 448) CCAACACAACAACACA 1 ThpsCp021 ( 82) AAACTACTAAAAAACA 1 ThpsCp019 ( 434) AAACTACTAAAAAACA 1 bd1313 ( 81) AAACTACTAAAAAACA 1 270314 ( 422) CAGAAACACGCACACA 1 14192 ( 423) CAGAAACACGCACACA 1 5099 ( 251) TAACAACAAAAGCACA 1 263180 ( 453) CATCAACAACGACACC 1 10647 ( 240) CGCCAACACCAACACC 1 262032 ( 463) CCGCAACACCAACGCA 1 11739 ( 229) CCAGAACTACAACACA 1 33868 ( 325) AACCAACAAAAACAAA 1 34864 ( 447) CAACAACTCAAACCCG 1 12030 ( 461) CAACCACACACCAACA 1 21250 ( 154) CAACAACTCCCGCAAA 1 260962 ( 284) CATCAACAAAAGCACT 1 17443 ( 475) CACCAGCAAGAACACA 1 11789 ( 437) CATATACTAAAAAACA 1 3878 ( 375) GAACAAAAACCAAACA 1 22689 ( 159) GCACCACAAACAAACC 1 1754 ( 280) CCTCAACACCCCCACA 1 23278 ( 480) CCACAACACAATCACT 1 ThpsCp020 ( 24) CAAAGACTAAAAAACA 1 23390 ( 424) CAGCCACAAAAGAACG 1 3435 ( 476) CTGCTACACAAACACC 1 268621 ( 28) CATGAACTCCAAAACC 1 40193 ( 362) CAACAACAAAAACTAC 1 31216 ( 18) CCACCAAAAAAACAAA 1 32845 ( 168) GGACAACACAATCACC 1 39841 ( 469) GTTCAACTCAAACACC 1 3300 ( 12) CATCAACTCCCTCAAA 1 25361 ( 358) CGAACACAAGCACACC 1 22527 ( 157) CCACCAATCCAACAAA 1 ThpsCp054 ( 235) CATTTACTCCAACACA 1 1786 ( 91) AAACAAATAGAACAAA 1 38512 ( 482) TACAAACAAGAAAACA 1 13134 ( 474) GAACCACACCCGCCCA 1 270229 ( 29) GAAACACAAAATCACG 1 1738 ( 262) CAACAGCAACAAAGCG 1 36431 ( 482) CATCAACAAGGAAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 38428 bayes= 11.3224 E= 4.9e-016 -53 151 -68 -262 138 -25 -168 -262 100 -125 -46 -45 -53 175 -227 -362 123 -8 -326 -104 183 -1207 -227 -1207 -153 204 -1207 -1207 123 -1207 -1207 38 106 100 -1207 -1207 86 66 -46 -1207 138 21 -227 -1207 147 -225 -94 -162 47 151 -1207 -1207 168 -225 -168 -362 -72 192 -1207 -1207 117 21 -127 -262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 43 E= 4.9e-016 0.186047 0.627907 0.139535 0.046512 0.697674 0.186047 0.069767 0.046512 0.534884 0.093023 0.162791 0.209302 0.186047 0.744186 0.046512 0.023256 0.627907 0.209302 0.023256 0.139535 0.953488 0.000000 0.046512 0.000000 0.093023 0.906977 0.000000 0.000000 0.627907 0.000000 0.000000 0.372093 0.558140 0.441860 0.000000 0.000000 0.488372 0.348837 0.162791 0.000000 0.697674 0.255814 0.046512 0.000000 0.744186 0.046512 0.116279 0.093023 0.372093 0.627907 0.000000 0.000000 0.860465 0.046512 0.069767 0.023256 0.162791 0.837209 0.000000 0.000000 0.604651 0.255814 0.093023 0.046512 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- CA[AT]C[AC]AC[AT][AC][AC][AC]A[CA]AC[AC] -------------------------------------------------------------------------------- Time 87.54 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 20 sites = 22 llr = 294 E-value = 4.4e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A ::::3:13:22:::::2::4 pos.-specific C 87:a158268:275192175 probability G :1::41:1::21:51:64:1 matrix T 12a:24143:663:81:531 bits 2.2 * 2.0 * 1.7 ** * 1.5 ** * * Relative 1.3 * ** * * * * Entropy 1.1 * ** * * ** * * (19.3 bits) 0.9 **** * ** ***** * 0.7 **** * ** ******* 0.4 **** ** ************ 0.2 ******************** 0.0 -------------------- Multilevel CCTCGCCTCCTTCGTCGTCC consensus T AT AT GCTC GTA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 270229 278 1.43e-12 TATCTACATC CCTCGCCTCCTTCGTCGGCC GACTCGCCGT 26131 184 1.43e-12 TATCTACATC CCTCGCCTCCTTCGTCGGCC GACTCGCCGT 24700 454 4.07e-09 TAACTCTAAT CTTCTCCTTCTTCCTCGTCC TCTTGACAAC 21300 473 1.09e-08 TTGAAGGTTC CCTCTTCCTCGTCCTCGTCA GTTCAGCG 264714 418 2.37e-08 CACTCTTTTT CTTCATCCTCGTCCTCGTCC AATACCAACG 2036 456 6.08e-08 ACGACGACCT CCTCTCCTCCTTTCGCCGCC GCTCCACCAA 270314 455 6.80e-08 ACACGAGTCT CCTCGTTACATCCGTCGGCA ACAACACGTC 14192 456 6.80e-08 ACACGAGTCT CCTCGTTACATCCGTCGGCA ACAACACGTC 21250 420 8.46e-08 CGCGAGTGCC CCTCACCACCGTCGTCACTC TCTTCTTCGC 22689 453 1.93e-07 TCATCGACGT CGTCGTCACCTCCGTCCTCT CACTCGCTCA 36431 349 3.12e-07 TCACCTATCA TCTCACCACCAGCCTCGTTA TACATCTGAC 3878 475 6.35e-07 TTACCCTTTC CCTCCTCGCAATCGCCGGCC AAACCA 270323 225 6.35e-07 GAAGTAGAAG CTTCACCTCCGCTGTCGTTT GATGATGAAC 268713 319 6.35e-07 CTTGCGAAGA CCTCGCCCACTTTCTCATTC TGTGTCATTG 3300 111 8.16e-07 GGCGCATTCT CCTCGGCATCTGCCTTGTTA TCGTCCGCCT 260962 54 9.60e-07 GATTCGAACA TCTCATATCCTTTCTCCTCC AATACCCGCT 6564 239 1.91e-06 CACCGCGAAA CCTCGACATCAACCTCGTCG TGCGATCATG 261284 230 2.37e-06 TTGACTTCGA CTTCTTCTTCTTTGTCCCTC CCTTCTTGAG 6759 208 3.33e-06 TTGGTGTTGT GTTCGGCCTCGTCGTCAGCA GACCGTCGTC 5074 223 4.59e-06 GAGGTGCCTG CGTCCCCTCCTGCGGTGGCG GTGTTGCTGG 3435 20 4.89e-06 CATAAAAATA TCTCAGTTCCTCCCCCATCA ACCCGATAAC 263180 123 6.22e-06 TTGATGTACG CCTCCCAGCAATTGGCGTCA ATGGGTGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 270229 1.4e-12 277_[+3]_203 26131 1.4e-12 183_[+3]_297 24700 4.1e-09 453_[+3]_27 21300 1.1e-08 472_[+3]_8 264714 2.4e-08 417_[+3]_63 2036 6.1e-08 455_[+3]_25 270314 6.8e-08 454_[+3]_26 14192 6.8e-08 455_[+3]_25 21250 8.5e-08 419_[+3]_61 22689 1.9e-07 452_[+3]_28 36431 3.1e-07 348_[+3]_132 3878 6.4e-07 474_[+3]_6 270323 6.4e-07 224_[+3]_256 268713 6.4e-07 318_[+3]_162 3300 8.2e-07 110_[+3]_370 260962 9.6e-07 53_[+3]_427 6564 1.9e-06 238_[+3]_242 261284 2.4e-06 229_[+3]_251 6759 3.3e-06 207_[+3]_273 5074 4.6e-06 222_[+3]_258 3435 4.9e-06 19_[+3]_461 263180 6.2e-06 122_[+3]_358 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=20 seqs=22 270229 ( 278) CCTCGCCTCCTTCGTCGGCC 1 26131 ( 184) CCTCGCCTCCTTCGTCGGCC 1 24700 ( 454) CTTCTCCTTCTTCCTCGTCC 1 21300 ( 473) CCTCTTCCTCGTCCTCGTCA 1 264714 ( 418) CTTCATCCTCGTCCTCGTCC 1 2036 ( 456) CCTCTCCTCCTTTCGCCGCC 1 270314 ( 455) CCTCGTTACATCCGTCGGCA 1 14192 ( 456) CCTCGTTACATCCGTCGGCA 1 21250 ( 420) CCTCACCACCGTCGTCACTC 1 22689 ( 453) CGTCGTCACCTCCGTCCTCT 1 36431 ( 349) TCTCACCACCAGCCTCGTTA 1 3878 ( 475) CCTCCTCGCAATCGCCGGCC 1 270323 ( 225) CTTCACCTCCGCTGTCGTTT 1 268713 ( 319) CCTCGCCCACTTTCTCATTC 1 3300 ( 111) CCTCGGCATCTGCCTTGTTA 1 260962 ( 54) TCTCATATCCTTTCTCCTCC 1 6564 ( 239) CCTCGACATCAACCTCGTCG 1 261284 ( 230) CTTCTTCTTCTTTGTCCCTC 1 6759 ( 208) GTTCGGCCTCGTCGTCAGCA 1 5074 ( 223) CGTCCCCTCCTGCGGTGGCG 1 3435 ( 20) TCTCAGTTCCTCCCCCATCA 1 263180 ( 123) CCTCCCAGCAATTGGCGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 38108 bayes= 12.2915 E= 4.4e-010 -1110 189 -230 -107 -1110 162 -130 -34 -1110 -1110 -1110 180 -1110 218 -1110 -1110 2 -70 87 -66 -256 104 -71 34 -156 181 -1110 -107 25 -28 -130 51 -256 152 -1110 15 -56 189 -1110 -1110 -56 -1110 2 104 -256 4 -71 104 -1110 172 -1110 -7 -1110 104 128 -1110 -1110 -128 -71 143 -1110 204 -1110 -166 -56 -28 151 -1110 -1110 -128 70 93 -1110 172 -1110 -7 44 104 -130 -166 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 22 E= 4.4e-010 0.000000 0.818182 0.045455 0.136364 0.000000 0.681818 0.090909 0.227273 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.136364 0.409091 0.181818 0.045455 0.454545 0.136364 0.363636 0.090909 0.772727 0.000000 0.136364 0.318182 0.181818 0.090909 0.409091 0.045455 0.636364 0.000000 0.318182 0.181818 0.818182 0.000000 0.000000 0.181818 0.000000 0.227273 0.590909 0.045455 0.227273 0.136364 0.590909 0.000000 0.727273 0.000000 0.272727 0.000000 0.454545 0.545455 0.000000 0.000000 0.090909 0.136364 0.772727 0.000000 0.909091 0.000000 0.090909 0.181818 0.181818 0.636364 0.000000 0.000000 0.090909 0.363636 0.545455 0.000000 0.727273 0.000000 0.272727 0.363636 0.454545 0.090909 0.090909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- C[CT]TC[GA][CT]C[TA][CT]C[TG][TC][CT][GC]TCG[TG][CT][CA] -------------------------------------------------------------------------------- Time 130.18 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10647 1.31e-03 239_[+2(1.42e-06)]_245 1136 1.50e-03 326_[+1(5.22e-07)]_153 1155 2.74e-02 500 11739 1.03e-04 206_[+1(6.04e-06)]_1_[+2(1.78e-06)]_\ 256 11789 6.58e-06 32_[+1(5.30e-05)]_70_[+1(3.75e-07)]_\ 292_[+2(4.22e-06)]_48 12030 3.96e-04 162_[+1(1.80e-05)]_17_\ [+1(2.81e-05)]_239_[+2(2.23e-06)]_24 13134 3.07e-02 473_[+2(3.08e-05)]_11 14192 1.39e-07 5_[+2(6.56e-05)]_174_[+1(5.86e-05)]_\ 185_[+2(5.27e-05)]_5_[+2(1.27e-06)]_17_[+3(6.80e-08)]_25 1724 4.44e-02 500 1738 1.60e-02 261_[+2(3.34e-05)]_223 17443 1.04e-02 474_[+2(4.22e-06)]_10 1754 3.04e-05 53_[+1(3.57e-06)]_164_\ [+1(1.54e-06)]_20_[+2(5.16e-06)]_68_[+1(3.49e-05)]_116 17704 3.01e-02 260_[+1(2.01e-05)]_219 1786 9.20e-02 90_[+2(2.22e-05)]_394 2036 6.77e-06 110_[+1(2.01e-05)]_324_\ [+3(6.08e-08)]_25 21042 2.82e-02 55_[+1(5.30e-05)]_424 21250 7.78e-08 55_[+2(9.28e-05)]_82_[+2(2.78e-06)]_\ 83_[+1(1.12e-05)]_146_[+3(8.46e-08)]_61 21300 1.44e-05 369_[+1(8.69e-05)]_82_\ [+3(1.09e-08)]_8 225 6.56e-02 246_[+1(5.86e-05)]_233 22527 2.55e-03 88_[+1(1.27e-05)]_47_[+2(1.88e-05)]_\ 328 22689 1.06e-06 158_[+2(4.67e-06)]_165_\ [+1(5.30e-05)]_92_[+3(1.93e-07)]_28 23278 4.54e-03 479_[+2(6.30e-06)]_5 23390 5.03e-03 423_[+2(6.94e-06)]_61 24700 2.48e-06 55_[+1(7.89e-05)]_87_[+1(5.30e-05)]_\ 269_[+3(4.07e-09)]_27 24876 2.30e-01 500 25361 1.14e-05 120_[+1(2.59e-08)]_71_\ [+1(1.60e-05)]_124_[+2(1.73e-05)]_127 25787 2.20e-03 223_[+1(9.81e-07)]_256 260962 1.45e-05 53_[+3(9.60e-07)]_56_[+3(1.78e-05)]_\ 80_[+3(6.16e-05)]_34_[+2(3.81e-06)]_201 261284 7.65e-06 229_[+3(2.37e-06)]_47_\ [+1(2.24e-07)]_183 26131 2.12e-09 183_[+3(1.43e-12)]_91_\ [+1(1.80e-05)]_185 262032 1.06e-03 462_[+2(1.59e-06)]_22 262056 5.12e-04 310_[+1(1.60e-05)]_21_\ [+1(8.41e-07)]_127 263180 1.61e-05 122_[+3(6.22e-06)]_310_\ [+2(1.42e-06)]_32 264714 2.38e-05 417_[+3(2.37e-08)]_63 268621 3.07e-04 27_[+2(7.64e-06)]_201_\ [+1(2.72e-06)]_235 268713 8.92e-04 318_[+3(6.35e-07)]_162 270229 4.55e-11 28_[+2(3.34e-05)]_233_\ [+3(1.43e-12)]_91_[+1(1.80e-05)]_91 270314 1.39e-07 4_[+2(6.56e-05)]_174_[+1(5.86e-05)]_\ 185_[+2(5.27e-05)]_5_[+2(1.27e-06)]_17_[+3(6.80e-08)]_26 270323 4.55e-05 11_[+1(2.72e-06)]_192_\ [+3(6.35e-07)]_256 30981 3.87e-01 500 31110 1.01e-01 500 31128 2.10e-02 202_[+1(3.88e-05)]_277 31216 6.96e-04 17_[+2(9.21e-06)]_10_[+2(7.04e-05)]_\ 189_[+1(9.96e-06)]_171_[+2(2.04e-05)]_44 31402 8.90e-04 449_[+1(1.14e-06)]_30 32845 4.43e-03 118_[+1(6.48e-05)]_28_\ [+2(1.01e-05)]_317 3300 2.43e-05 11_[+2(1.33e-05)]_83_[+3(8.16e-07)]_\ 370 33035 3.12e-07 110_[+1(2.67e-07)]_56_\ [+3(8.73e-05)]_141_[+2(7.04e-05)]_83_[+2(5.32e-07)]_4_[+2(3.61e-05)]_17 3379 5.23e-04 36_[+1(9.56e-05)]_362_\ [+2(5.32e-07)]_65 33868 1.42e-04 324_[+2(2.00e-06)]_36_\ [+1(2.81e-05)]_103 3435 1.03e-04 19_[+3(4.89e-06)]_436_\ [+2(7.64e-06)]_9 34543 6.26e-02 106_[+1(9.56e-05)]_373 34864 1.60e-03 446_[+2(2.23e-06)]_38 36431 1.57e-05 298_[+1(6.48e-05)]_29_\ [+3(3.12e-07)]_113_[+2(4.89e-05)]_3 38512 5.62e-05 145_[+1(2.67e-07)]_315_\ [+2(3.08e-05)]_3 3853 4.12e-01 500 38608 1.65e-03 224_[+1(9.81e-07)]_255 3878 7.87e-09 139_[+1(7.32e-08)]_214_\ [+2(4.67e-06)]_84_[+3(6.35e-07)]_6 39841 5.29e-03 142_[+1(3.88e-05)]_305_\ [+2(1.21e-05)]_16 40193 6.84e-03 361_[+2(8.39e-06)]_123 4821 1.03e-01 500 4888 1.25e-02 22_[+2(2.41e-05)]_462 5074 1.26e-04 27_[+1(9.96e-06)]_18_[+3(9.58e-05)]_\ 113_[+1(6.48e-05)]_2_[+3(4.59e-06)]_2_[+1(1.78e-06)]_235 5099 4.20e-07 250_[+2(1.42e-06)]_[+2(1.58e-05)]_\ 124_[+1(4.90e-08)]_73 6564 5.44e-05 35_[+1(2.01e-05)]_182_\ [+3(1.91e-06)]_242 6716 1.44e-01 474_[+1(8.69e-05)]_5 6759 3.61e-06 14_[+1(3.13e-05)]_7_[+1(7.32e-08)]_\ 144_[+3(3.33e-06)]_273 8085 1.75e-01 500 866 4.23e-02 123_[+1(5.86e-05)]_356 976 1.61e-01 500 bd1313 2.40e-04 22_[+1(1.27e-05)]_37_[+2(1.00e-06)]_\ 404 bd1545 4.14e-01 500 bd2073 1.07e-04 39_[+2(5.32e-07)]_178_\ [+1(7.78e-06)]_246 ThpsCp001 2.23e-02 128 ThpsCp018 1.07e-04 17_[+2(5.32e-07)]_178_\ [+1(7.78e-06)]_268 ThpsCp019 9.23e-06 17_[+3(4.21e-05)]_338_\ [+1(1.27e-05)]_37_[+2(1.00e-06)]_51 ThpsCp020 1.99e-02 23_[+2(6.94e-06)]_461 ThpsCp021 2.40e-04 23_[+1(1.27e-05)]_37_[+2(1.00e-06)]_\ 403 ThpsCp053 3.74e-01 500 ThpsCp054 1.89e-03 41_[+1(6.86e-06)]_172_\ [+2(2.04e-05)]_250 ThpsCp067 5.94e-02 238_[+1(1.43e-05)]_241 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************