******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/290/290.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10498 1.0000 500 11178 1.0000 500 13653 1.0000 500 22011 1.0000 500 22851 1.0000 500 23309 1.0000 500 23762 1.0000 500 23835 1.0000 500 25279 1.0000 500 25355 1.0000 500 264164 1.0000 500 268080 1.0000 500 269399 1.0000 500 28330 1.0000 500 28682 1.0000 500 34186 1.0000 500 37410 1.0000 500 39470 1.0000 500 40 1.0000 500 832 1.0000 500 8436 1.0000 500 9494 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/290/290.seqs.fa -oc motifs/290 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 22 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 11000 N= 22 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.250 C 0.237 G 0.253 T 0.259 Background letter frequencies (from dataset with add-one prior applied): A 0.250 C 0.237 G 0.253 T 0.259 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 19 llr = 255 E-value = 3.0e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 22:::1522295:72382454 pos.-specific C 6853863677:4927728645 probability G 1:11:11111:1121:1:11: matrix T 2:4722211111::::::::1 bits 2.1 1.9 * 1.7 * * 1.5 * * * * * Relative 1.2 * * * * * * Entropy 1.0 * * * * **** (19.3 bits) 0.8 * ** ** ******* 0.6 ***** *** ********* 0.4 ****** ************** 0.2 ********************* 0.0 --------------------- Multilevel CCCTCCACCCAACACCACCAC consensus A TC TC C AA ACA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 10498 464 2.12e-09 AATGACACAA CCTTCCAACCATCACCACCCC TACCACGAAA 22011 441 3.16e-09 TTGGCAGGAC CCCTCTCACCACCACAACCAC CAGCCACTCA 28330 465 3.61e-09 TTGTTATCGA CCTTCACCCCAACACAACACA TTCTTTGCTG 264164 419 7.74e-09 AGCCCCCCCC CCCCCGGCCCACCACCACCAC AGGCGACCAC 268080 389 3.08e-08 TCGGCACTAC TCTCCCCCCCAACCCCCCCCC GACCAAGAGC 25355 442 7.13e-08 CACAAATCCT CCGTCCTCTCAACGCCACCAC AAAGCTAGTT 832 463 8.71e-08 TTCACGTGAT CACTCCTCGCAACGCCACACA TCCTCATCCT 23835 419 1.06e-07 ATTTCATCCT CCCTTCACAAACCACCACAAT GTAGCGACCG 23762 334 1.29e-07 CACCCGCCGA CCCCCCAGCCACCAACAACGC CTCAAACACA 9494 348 1.89e-07 GCACCTTCCT CCGTCCGCCAAGCAACACCCA ACGCATGCTA 40 453 2.97e-07 GTGCGGCACA ACCCCCAACCAACACAAAACT GCACCCTTCT 37410 281 4.22e-07 GCGAAAGCTG TCCGCCACACAACGCCACCGA CTTCCTCCGA 28682 376 5.01e-07 TATTGCATAT ACTTCTACACACCAGCCCCAA CGGAGAAGCG 269399 51 9.68e-07 GCCAATGAAG ACTTCCACCAAACCCACCGAC GATGCAACGA 25279 472 1.32e-06 TGCTCATTGA GCCTCCACCGACGACAACAAC GCACTCAC 34186 290 2.07e-06 AGTAGACACA CATTTTTGCCACCCCCACACC CCTCACCTGG 39470 172 2.40e-06 GGTAGCTCAA TCTTTCCTCCAACAACGCAAA GCTTTTTGTT 13653 466 2.40e-06 GCAGTGACAA CACCCAACGCTACAACACCAA ACAACAACGC 8436 13 2.97e-06 GTACTATTCT ACCTCTCTCTAGCACCAACCA TACCTTGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10498 2.1e-09 463_[+1]_16 22011 3.2e-09 440_[+1]_39 28330 3.6e-09 464_[+1]_15 264164 7.7e-09 418_[+1]_61 268080 3.1e-08 388_[+1]_91 25355 7.1e-08 441_[+1]_38 832 8.7e-08 462_[+1]_17 23835 1.1e-07 418_[+1]_61 23762 1.3e-07 333_[+1]_146 9494 1.9e-07 347_[+1]_132 40 3e-07 452_[+1]_27 37410 4.2e-07 280_[+1]_199 28682 5e-07 375_[+1]_104 269399 9.7e-07 50_[+1]_429 25279 1.3e-06 471_[+1]_8 34186 2.1e-06 289_[+1]_190 39470 2.4e-06 171_[+1]_308 13653 2.4e-06 465_[+1]_14 8436 3e-06 12_[+1]_467 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=19 10498 ( 464) CCTTCCAACCATCACCACCCC 1 22011 ( 441) CCCTCTCACCACCACAACCAC 1 28330 ( 465) CCTTCACCCCAACACAACACA 1 264164 ( 419) CCCCCGGCCCACCACCACCAC 1 268080 ( 389) TCTCCCCCCCAACCCCCCCCC 1 25355 ( 442) CCGTCCTCTCAACGCCACCAC 1 832 ( 463) CACTCCTCGCAACGCCACACA 1 23835 ( 419) CCCTTCACAAACCACCACAAT 1 23762 ( 334) CCCCCCAGCCACCAACAACGC 1 9494 ( 348) CCGTCCGCCAAGCAACACCCA 1 40 ( 453) ACCCCCAACCAACACAAAACT 1 37410 ( 281) TCCGCCACACAACGCCACCGA 1 28682 ( 376) ACTTCTACACACCAGCCCCAA 1 269399 ( 51) ACTTCCACCAAACCCACCGAC 1 25279 ( 472) GCCTCCACCGACGACAACAAC 1 34186 ( 290) CATTTTTGCCACCCCCACACC 1 39470 ( 172) TCTTTCCTCCAACAACGCAAA 1 13653 ( 466) CACCCAACGCTACAACACCAA 1 8436 ( 13) ACCTCTCTCTAGCACCAACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 10560 bayes= 10.0144 E= 3.0e-016 -25 129 -226 -72 -66 183 -1089 -1089 -1089 115 -127 51 -1089 15 -226 140 -1089 183 -1089 -72 -125 141 -226 -30 92 15 -127 -72 -66 141 -127 -130 -66 153 -127 -230 -66 163 -226 -230 192 -1089 -1089 -230 92 64 -127 -230 -1089 200 -226 -1089 145 -59 -68 -1089 -25 163 -226 -1089 7 163 -1089 -1089 166 -59 -226 -1089 -66 183 -1089 -1089 56 129 -226 -1089 92 83 -127 -1089 75 100 -1089 -130 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 19 E= 3.0e-016 0.210526 0.578947 0.052632 0.157895 0.157895 0.842105 0.000000 0.000000 0.000000 0.526316 0.105263 0.368421 0.000000 0.263158 0.052632 0.684211 0.000000 0.842105 0.000000 0.157895 0.105263 0.631579 0.052632 0.210526 0.473684 0.263158 0.105263 0.157895 0.157895 0.631579 0.105263 0.105263 0.157895 0.684211 0.105263 0.052632 0.157895 0.736842 0.052632 0.052632 0.947368 0.000000 0.000000 0.052632 0.473684 0.368421 0.105263 0.052632 0.000000 0.947368 0.052632 0.000000 0.684211 0.157895 0.157895 0.000000 0.210526 0.736842 0.052632 0.000000 0.263158 0.736842 0.000000 0.000000 0.789474 0.157895 0.052632 0.000000 0.157895 0.842105 0.000000 0.000000 0.368421 0.578947 0.052632 0.000000 0.473684 0.421053 0.105263 0.000000 0.421053 0.473684 0.000000 0.105263 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CA]C[CT][TC]C[CT][AC]CCCA[AC]CA[CA][CA]AC[CA][AC][CA] -------------------------------------------------------------------------------- Time 4.70 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 12 sites = 22 llr = 194 E-value = 1.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :44:::::2:41 pos.-specific C 21::::::31:1 probability G :3:3a3:a4:65 matrix T 8167:6a:19:2 bits 2.1 * 1.9 ** 1.7 * ** 1.5 * ** * Relative 1.2 * * ** * Entropy 1.0 * *** ** ** (12.7 bits) 0.8 * ****** ** 0.6 * ****** ** 0.4 * ****** ** 0.2 ************ 0.0 ------------ Multilevel TATTGTTGGTGG consensus CGAG G C AT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 34186 70 4.61e-07 CCTCTGTTGG TATTGTTGGTAG CGTTGGTAGG 11178 18 7.58e-07 GAAGTAGTGG TATTGGTGGTGG AAGGATTGAC 25279 223 1.90e-06 GGTGTGTTGA TGTTGTTGGTGT ATCGTTGTTA 23835 118 2.50e-06 TGTATTGATT TGATGTTGATGG CGATGCTGAT 28682 16 2.94e-06 GAGCACAACT TATTGGTGATGG TACAAACTTT 37410 194 5.32e-06 TTCGACATGG TGAGGTTGGTGG GGAGAGGAGA 25355 244 7.24e-06 GTGTGACTGC TAATGTTGATGT GTGCATCATC 13653 243 8.43e-06 CGGAGTGTTG TTTTGGTGGTGG CTTGCCATTG 23309 471 9.88e-06 CGCTTTGTCG TCTTGTTGCTAG ATCTGGCGTT 22851 195 1.48e-05 GAGAAGAGAG TGATGGTGGTGT ATGAGTTGTA 28330 188 4.13e-05 ATGTGAACAA TTTTGGTGGTGC CGCCGATCGC 268080 122 4.55e-05 GTCTTCCTGC CAATGTTGCTGC AAATACTACT 23762 1 5.48e-05 . CAATGTTGATGC GAAAGAACGA 264164 157 5.92e-05 GCATCCACAT TCAGGGTGCTGG CCAAGAGGGC 8436 449 1.00e-04 TTTGCGGTTT CATGGTTGATAT GTCATGTACA 10498 145 1.07e-04 TTTGCCGCGG CGTTGTTGCCAG GGCTGGAGGG 832 180 1.21e-04 GTTGTCGTCG TCTTGGTGGCGT GGGTCTGTCT 9494 203 1.37e-04 TACATGTTGT TATGGATGCTAG GACAATTCGC 39470 196 1.37e-04 ACGCAAAGCT TTTTGTTGTTAA AAAGTGGCGT 22011 2 1.53e-04 G TAAGGTTGTTAA ACAAAAGAGA 40 65 1.79e-04 CGGATGCCAA TGAGGTTGCCGA GGCAAAGCTC 269399 247 1.79e-04 CCATGAGACA CGTTCTTGGTAG CTTCGCAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 34186 4.6e-07 69_[+2]_419 11178 7.6e-07 17_[+2]_471 25279 1.9e-06 222_[+2]_266 23835 2.5e-06 117_[+2]_371 28682 2.9e-06 15_[+2]_473 37410 5.3e-06 193_[+2]_295 25355 7.2e-06 243_[+2]_245 13653 8.4e-06 242_[+2]_246 23309 9.9e-06 470_[+2]_18 22851 1.5e-05 194_[+2]_294 28330 4.1e-05 187_[+2]_301 268080 4.5e-05 121_[+2]_367 23762 5.5e-05 [+2]_488 264164 5.9e-05 156_[+2]_332 8436 0.0001 448_[+2]_40 10498 0.00011 144_[+2]_344 832 0.00012 179_[+2]_309 9494 0.00014 202_[+2]_286 39470 0.00014 195_[+2]_293 22011 0.00015 1_[+2]_487 40 0.00018 64_[+2]_424 269399 0.00018 246_[+2]_242 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=12 seqs=22 34186 ( 70) TATTGTTGGTAG 1 11178 ( 18) TATTGGTGGTGG 1 25279 ( 223) TGTTGTTGGTGT 1 23835 ( 118) TGATGTTGATGG 1 28682 ( 16) TATTGGTGATGG 1 37410 ( 194) TGAGGTTGGTGG 1 25355 ( 244) TAATGTTGATGT 1 13653 ( 243) TTTTGGTGGTGG 1 23309 ( 471) TCTTGTTGCTAG 1 22851 ( 195) TGATGGTGGTGT 1 28330 ( 188) TTTTGGTGGTGC 1 268080 ( 122) CAATGTTGCTGC 1 23762 ( 1) CAATGTTGATGC 1 264164 ( 157) TCAGGGTGCTGG 1 8436 ( 449) CATGGTTGATAT 1 10498 ( 145) CGTTGTTGCCAG 1 832 ( 180) TCTTGGTGGCGT 1 9494 ( 203) TATGGATGCTAG 1 39470 ( 196) TTTTGTTGTTAA 1 22011 ( 2) TAAGGTTGTTAA 1 40 ( 65) TGAGGTTGCCGA 1 269399 ( 247) CGTTCTTGGTAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 10758 bayes= 8.93074 E= 1.4e-002 -1110 -6 -1110 157 71 -80 33 -93 71 -1110 -1110 119 -1110 -1110 11 149 -1110 -238 191 -1110 -246 -1110 33 129 -1110 -1110 -1110 195 -1110 -1110 198 -1110 -14 20 69 -151 -1110 -80 -1110 174 54 -1110 133 -1110 -87 -80 98 -19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 22 E= 1.4e-002 0.000000 0.227273 0.000000 0.772727 0.409091 0.136364 0.318182 0.136364 0.409091 0.000000 0.000000 0.590909 0.000000 0.000000 0.272727 0.727273 0.000000 0.045455 0.954545 0.000000 0.045455 0.000000 0.318182 0.636364 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.227273 0.272727 0.409091 0.090909 0.000000 0.136364 0.000000 0.863636 0.363636 0.000000 0.636364 0.000000 0.136364 0.136364 0.500000 0.227273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [TC][AG][TA][TG]G[TG]TG[GCA]T[GA][GT] -------------------------------------------------------------------------------- Time 9.16 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 13 llr = 177 E-value = 7.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :282887524:a:31:29886 pos.-specific C 1:25121:255:92:86:222 probability G 75:11::221:::21::::1: matrix T 23:21:234:5:148221::2 bits 2.1 * 1.9 * 1.7 ** * 1.5 ** * Relative 1.2 * * ** ** ** Entropy 1.0 * * *** ** *** (19.7 bits) 0.8 * * *** **** ** *** 0.6 *** *** **** ******* 0.4 ******** **** ******* 0.2 ******** ************ 0.0 --------------------- Multilevel GGACAAAATCCACTTCCAAAA consensus TTCA CTTCAT A TA C C sequence GG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 23309 396 3.41e-09 CCTTTGGAAG GGACAAATTATACTTTTAAAA CCGGTAATGA 11178 107 6.55e-09 CTAGCCTGCC GTCCAAAACCTACGTCCAAAC GTCATCCGAG 22851 12 1.35e-08 CGAACATCCA GTATCAAAGCTACTTCCAAAA TCTGCAACTC 269399 275 2.39e-08 AGAGGCCTTC GGACAAATTCCATCTTCAAAA GCACGCTGAT 264164 271 2.97e-08 GGAGGGGAGG GGATAATGTCCACATCAAAAC CTATATTGTC 9494 10 1.10e-07 GTTTCTACT TGAAACATTGCACCTCCAAAA CAACTTTCTT 39470 292 1.74e-07 CCTACTACGT TTACAACAAATACATTCAAAA TGGTGCGTTA 28682 475 2.07e-07 CTTCACGCAA TGCCACAACCCACGTCCACAC ACGAC 34186 478 9.30e-07 CTCTCTAATA CACAAAAACACACATCAACAA CC 37410 211 9.99e-07 GGTGGGGAGA GGAGAATAAACACTTCTAACT TTGACTTCTT 268080 16 9.99e-07 AAGAAGGCGA GGAAGAAGTCTACTGCCAAGA AACCTCCAGC 22011 165 1.84e-06 AGGAAGAACT GAACTAATGCTACTACCTAAA TGCTTGACGT 8436 260 2.22e-06 TCGTAATCAC GTACACTGGACACATCAACCT TCCTGGCAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 23309 3.4e-09 395_[+3]_84 11178 6.5e-09 106_[+3]_373 22851 1.4e-08 11_[+3]_468 269399 2.4e-08 274_[+3]_205 264164 3e-08 270_[+3]_209 9494 1.1e-07 9_[+3]_470 39470 1.7e-07 291_[+3]_188 28682 2.1e-07 474_[+3]_5 34186 9.3e-07 477_[+3]_2 37410 1e-06 210_[+3]_269 268080 1e-06 15_[+3]_464 22011 1.8e-06 164_[+3]_315 8436 2.2e-06 259_[+3]_220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=13 23309 ( 396) GGACAAATTATACTTTTAAAA 1 11178 ( 107) GTCCAAAACCTACGTCCAAAC 1 22851 ( 12) GTATCAAAGCTACTTCCAAAA 1 269399 ( 275) GGACAAATTCCATCTTCAAAA 1 264164 ( 271) GGATAATGTCCACATCAAAAC 1 9494 ( 10) TGAAACATTGCACCTCCAAAA 1 39470 ( 292) TTACAACAAATACATTCAAAA 1 28682 ( 475) TGCCACAACCCACGTCCACAC 1 34186 ( 478) CACAAAAACACACATCAACAA 1 37410 ( 211) GGAGAATAAACACTTCTAACT 1 268080 ( 16) GGAAGAAGTCTACTGCCAAGA 1 22011 ( 165) GAACTAATGCTACTACCTAAA 1 8436 ( 260) GTACACTGGACACATCAACCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 10560 bayes= 10.1952 E= 7.2e-002 -1035 -162 145 -17 -70 -1035 109 25 162 -4 -1035 -1035 -12 118 -172 -75 162 -162 -172 -175 162 -4 -1035 -1035 147 -162 -1035 -17 88 -1035 -14 25 -70 -4 -14 57 62 118 -172 -1035 -1035 118 -1035 83 200 -1035 -1035 -1035 -1035 196 -1035 -175 30 -62 -72 57 -170 -1035 -172 171 -1035 170 -1035 -17 -12 137 -1035 -75 188 -1035 -1035 -175 162 -4 -1035 -1035 162 -62 -172 -1035 130 -4 -1035 -75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 13 E= 7.2e-002 0.000000 0.076923 0.692308 0.230769 0.153846 0.000000 0.538462 0.307692 0.769231 0.230769 0.000000 0.000000 0.230769 0.538462 0.076923 0.153846 0.769231 0.076923 0.076923 0.076923 0.769231 0.230769 0.000000 0.000000 0.692308 0.076923 0.000000 0.230769 0.461538 0.000000 0.230769 0.307692 0.153846 0.230769 0.230769 0.384615 0.384615 0.538462 0.076923 0.000000 0.000000 0.538462 0.000000 0.461538 1.000000 0.000000 0.000000 0.000000 0.000000 0.923077 0.000000 0.076923 0.307692 0.153846 0.153846 0.384615 0.076923 0.000000 0.076923 0.846154 0.000000 0.769231 0.000000 0.230769 0.230769 0.615385 0.000000 0.153846 0.923077 0.000000 0.000000 0.076923 0.769231 0.230769 0.000000 0.000000 0.769231 0.153846 0.076923 0.000000 0.615385 0.230769 0.000000 0.153846 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [GT][GT][AC][CA]A[AC][AT][ATG][TCG][CA][CT]AC[TA]T[CT][CA]A[AC]A[AC] -------------------------------------------------------------------------------- Time 13.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10498 6.00e-06 463_[+1(2.12e-09)]_16 11178 5.37e-08 17_[+2(7.58e-07)]_77_[+3(6.55e-09)]_\ 373 13653 3.58e-05 242_[+2(8.43e-06)]_211_\ [+1(2.40e-06)]_14 22011 2.80e-08 164_[+3(1.84e-06)]_255_\ [+1(3.16e-09)]_39 22851 5.52e-06 11_[+3(1.35e-08)]_162_\ [+2(1.48e-05)]_294 23309 1.52e-06 395_[+3(3.41e-09)]_54_\ [+2(9.88e-06)]_18 23762 1.62e-04 [+2(5.48e-05)]_196_[+1(3.91e-06)]_\ 104_[+1(1.29e-07)]_146 23835 2.02e-06 117_[+2(2.50e-06)]_289_\ [+1(1.06e-07)]_61 25279 3.21e-05 100_[+2(8.43e-06)]_110_\ [+2(1.90e-06)]_237_[+1(1.32e-06)]_8 25355 2.48e-06 243_[+2(7.24e-06)]_186_\ [+1(7.13e-08)]_38 264164 6.03e-10 156_[+2(5.92e-05)]_102_\ [+3(2.97e-08)]_127_[+1(7.74e-09)]_15_[+1(3.18e-06)]_25 268080 4.34e-08 15_[+3(9.99e-07)]_85_[+2(4.55e-05)]_\ 255_[+1(3.08e-08)]_91 269399 1.14e-07 50_[+1(9.68e-07)]_203_\ [+3(2.39e-08)]_205 28330 3.40e-06 187_[+2(4.13e-05)]_265_\ [+1(3.61e-09)]_15 28682 1.08e-08 15_[+2(2.94e-06)]_348_\ [+1(5.01e-07)]_78_[+3(2.07e-07)]_5 34186 2.89e-08 69_[+2(4.61e-07)]_208_\ [+1(2.07e-06)]_167_[+3(9.30e-07)]_2 37410 6.74e-08 193_[+2(5.32e-06)]_5_[+3(9.99e-07)]_\ 49_[+1(4.22e-07)]_13_[+1(5.25e-05)]_165 39470 1.24e-06 171_[+1(2.40e-06)]_99_\ [+3(1.74e-07)]_188 40 1.16e-04 452_[+1(2.97e-07)]_27 832 1.06e-04 462_[+1(8.71e-08)]_17 8436 1.11e-05 12_[+1(2.97e-06)]_226_\ [+3(2.22e-06)]_220 9494 8.16e-08 9_[+3(1.10e-07)]_317_[+1(1.89e-07)]_\ 132 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************