******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/32/32.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10102 1.0000 500 10279 1.0000 500 10571 1.0000 500 1407 1.0000 500 1685 1.0000 500 1773 1.0000 500 21383 1.0000 500 22424 1.0000 500 22673 1.0000 500 22852 1.0000 500 23129 1.0000 500 260832 1.0000 500 261766 1.0000 500 262860 1.0000 500 264925 1.0000 500 270212 1.0000 500 2936 1.0000 500 3153 1.0000 500 31778 1.0000 500 3481 1.0000 500 37585 1.0000 500 4225 1.0000 500 6348 1.0000 500 6942 1.0000 500 8827 1.0000 500 8954 1.0000 500 9097 1.0000 500 9263 1.0000 500 968 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/32/32.seqs.fa -oc motifs/32 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 29 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 14500 N= 29 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.268 C 0.221 G 0.239 T 0.272 Background letter frequencies (from dataset with add-one prior applied): A 0.268 C 0.221 G 0.239 T 0.272 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 20 sites = 22 llr = 280 E-value = 1.3e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 15242526926475a8:573 pos.-specific C 84646553:82525:1a:17 probability G :::1::21::111::1:3:: matrix T :1222:1:1::1:::::21: bits 2.2 * 2.0 * * 1.7 * * 1.5 ** * * Relative 1.3 * ** * * * Entropy 1.1 * * ** ** * * (18.3 bits) 0.9 * * * ** **** ** 0.7 *** ** ** ***** ** 0.4 *** ** ************* 0.2 ******************** 0.0 -------------------- Multilevel CACACACAACACAAAACAAC consensus C CAC C CA C G A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 8827 478 7.62e-12 AGTCAACAAA CCCACCCAACACACAACGAC ACA 270212 479 2.57e-10 GCAGACAACA CACACAGAACACAAAACAAC CA 22673 480 2.57e-10 GCAGACAACA CACACAGAACACAAAACAAC C 9097 475 3.48e-09 TGTTTGTTAC CCACAACAACACAAAACAAC TCCACA 31778 298 7.65e-08 ACAACCTCTT CCCAAACAAAAAAAAACAAA AAAACCTCTT 1407 398 2.10e-07 CTTAAAACCC CACACCCGACAAAAAGCAAA GAAGCACCGC 1685 160 2.33e-07 ATGCAACATC AACTCCTAACCCACAACTAC TGTTCATTGA 4225 417 3.89e-07 CTCCTAATGA CAACCCAAACGAACAACGTC ATTGTGCCCC 264925 481 4.29e-07 CGAAAAGCAC AATACACCACAAACACCAAC 22852 407 6.88e-07 ACACAAATTG CCTGACCCTCACACAACAAC GTCTCTTCTT 8954 466 9.01e-07 TCTTCCTCAC CCAACACGACACCAACCTAC GCCGACCCAC 37585 449 1.27e-06 CCATCTTATC CCCCTCCAACGTCCAACGTC ACTTTCTACC 10102 450 1.27e-06 CCATCTTATC CCCCTCCAACGTCCAACGTC ACTTTCTACC 2936 366 1.63e-06 CATCTCCTCA CACCTCAATACCAAAACGAC GCTGACCCCC 9263 471 1.92e-06 TCGCTCTTCG CTCCACAAAACAGCAACAAC AATCGTCATC 10571 480 2.07e-06 CGCGAACACT CCACCAACACCAGCAGCAAC G 6348 426 2.24e-06 TGATAAGTCA CATTCATCACACAAAACTCA TCTCACTTCG 23129 466 2.42e-06 GCTGTCACCG TCTTCATCACAAAAAACAAC AAGCGCTTGT 10279 480 3.03e-06 ACGCGTACCT CTCTCAGTACAAGCAACTAC G 3153 475 3.76e-06 CGCCACACCG CACCTACAAACGAAAACGCA AGCACC 968 474 4.63e-06 GCAAGCAGTG AACAACGAACACCAAACTCA GGCAACG 6942 424 1.18e-05 GGGAAGCACA CTCGCCCCACTGACACCGAA CCGAACGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 8827 7.6e-12 477_[+1]_3 270212 2.6e-10 478_[+1]_2 22673 2.6e-10 479_[+1]_1 9097 3.5e-09 474_[+1]_6 31778 7.6e-08 297_[+1]_183 1407 2.1e-07 397_[+1]_83 1685 2.3e-07 159_[+1]_321 4225 3.9e-07 416_[+1]_64 264925 4.3e-07 480_[+1] 22852 6.9e-07 406_[+1]_74 8954 9e-07 465_[+1]_15 37585 1.3e-06 448_[+1]_32 10102 1.3e-06 449_[+1]_31 2936 1.6e-06 365_[+1]_115 9263 1.9e-06 470_[+1]_10 10571 2.1e-06 479_[+1]_1 6348 2.2e-06 425_[+1]_55 23129 2.4e-06 465_[+1]_15 10279 3e-06 479_[+1]_1 3153 3.8e-06 474_[+1]_6 968 4.6e-06 473_[+1]_7 6942 1.2e-05 423_[+1]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=20 seqs=22 8827 ( 478) CCCACCCAACACACAACGAC 1 270212 ( 479) CACACAGAACACAAAACAAC 1 22673 ( 480) CACACAGAACACAAAACAAC 1 9097 ( 475) CCACAACAACACAAAACAAC 1 31778 ( 298) CCCAAACAAAAAAAAACAAA 1 1407 ( 398) CACACCCGACAAAAAGCAAA 1 1685 ( 160) AACTCCTAACCCACAACTAC 1 4225 ( 417) CAACCCAAACGAACAACGTC 1 264925 ( 481) AATACACCACAAACACCAAC 1 22852 ( 407) CCTGACCCTCACACAACAAC 1 8954 ( 466) CCAACACGACACCAACCTAC 1 37585 ( 449) CCCCTCCAACGTCCAACGTC 1 10102 ( 450) CCCCTCCAACGTCCAACGTC 1 2936 ( 366) CACCTCAATACCAAAACGAC 1 9263 ( 471) CTCCACAAAACAGCAACAAC 1 10571 ( 480) CCACCAACACCAGCAGCAAC 1 6348 ( 426) CATTCATCACACAAAACTCA 1 23129 ( 466) TCTTCATCACAAAAAACAAC 1 10279 ( 480) CTCTCAGTACAAGCAACTAC 1 3153 ( 475) CACCTACAAACGAAAACGCA 1 968 ( 474) AACAACGAACACCAAACTCA 1 6942 ( 424) CTCGCCCCACTGACACCGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 13949 bayes= 9.66176 E= 1.3e-016 -98 189 -1110 -258 76 89 -1110 -99 -56 152 -1110 -58 44 72 -139 -58 -24 142 -1110 -58 90 118 -1110 -1110 -56 118 -39 -99 114 30 -139 -258 176 -1110 -1110 -158 -56 189 -1110 -1110 114 4 -81 -258 44 104 -139 -158 134 -28 -81 -1110 90 118 -1110 -1110 190 -1110 -1110 -1110 153 -70 -139 -1110 -1110 218 -1110 -1110 76 -1110 41 -26 144 -70 -1110 -99 2 172 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 22 E= 1.3e-016 0.136364 0.818182 0.000000 0.045455 0.454545 0.409091 0.000000 0.136364 0.181818 0.636364 0.000000 0.181818 0.363636 0.363636 0.090909 0.181818 0.227273 0.590909 0.000000 0.181818 0.500000 0.500000 0.000000 0.000000 0.181818 0.500000 0.181818 0.136364 0.590909 0.272727 0.090909 0.045455 0.909091 0.000000 0.000000 0.090909 0.181818 0.818182 0.000000 0.000000 0.590909 0.227273 0.136364 0.045455 0.363636 0.454545 0.090909 0.090909 0.681818 0.181818 0.136364 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.772727 0.136364 0.090909 0.000000 0.000000 1.000000 0.000000 0.000000 0.454545 0.000000 0.318182 0.227273 0.727273 0.136364 0.000000 0.136364 0.272727 0.727273 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- C[AC]C[AC][CA][AC]C[AC]AC[AC][CA]A[AC]AAC[AGT]A[CA] -------------------------------------------------------------------------------- Time 7.32 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 11 llr = 181 E-value = 3.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 7:559:45133325139::a: pos.-specific C 2115::1:12::2::3::4:1 probability G :92::a5555756:951a6:9 matrix T 1:2:1:::3::2:5::::::: bits 2.2 2.0 * * * 1.7 * * * ** 1.5 * ** * ** ** Relative 1.3 * ** * ** ** Entropy 1.1 * *** * * * ***** (23.7 bits) 0.9 ** *** * * ** ***** 0.7 ** ***** ****** ***** 0.4 ** ****************** 0.2 ********************* 0.0 --------------------- Multilevel AGACAGGGGGGGGAGGAGGAG consensus A AATAAA T A C sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 270212 382 1.83e-10 GCAATTGAGA AGACAGGAGGGTGTGAAGGAG GCGGCGAATC 22673 383 1.83e-10 GCAATTGAGA AGACAGGAGGGTGTGAAGGAG GCGGCGAATC 8827 300 3.38e-10 TGGTGTTGGT AGAAAGGGTAGGGTGGAGCAG CAGCAAGGTG 260832 273 1.46e-09 ATCTCTGCAG AGGCAGGGAGGAGAGGAGGAG CGGGTAAGTT 968 238 8.83e-09 ACGGCGGTTT TGAAAGGGGGGGATGCAGCAG CACGAGGGCA 264925 332 1.16e-08 CAATGCGAAG AGAAAGAATAGGGAAGAGGAG ATGTTGACGA 4225 150 2.10e-08 AATGCATCGT CGTCTGGAGGAGGAGGAGGAG GAGGAGGAGA 1407 269 5.46e-08 GAACTCCACG AGGAAGAAGGAAGAGAAGGAC CCTTACCCCT 6348 314 9.66e-08 GCTGTGGAAT AGCCAGAGGAAGCAGCGGGAG TGGTGGTAGT 1685 201 1.29e-07 ATAATCTACG ACACAGCGTCGGCTGCAGCAG AAACAGAATA 8954 360 1.78e-07 CCAGAAAATC CGTAAGAGCCGAAAGGAGCAG GAAGTGATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 270212 1.8e-10 381_[+2]_98 22673 1.8e-10 382_[+2]_97 8827 3.4e-10 299_[+2]_180 260832 1.5e-09 272_[+2]_207 968 8.8e-09 237_[+2]_242 264925 1.2e-08 331_[+2]_148 4225 2.1e-08 149_[+2]_330 1407 5.5e-08 268_[+2]_211 6348 9.7e-08 313_[+2]_166 1685 1.3e-07 200_[+2]_279 8954 1.8e-07 359_[+2]_120 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=11 270212 ( 382) AGACAGGAGGGTGTGAAGGAG 1 22673 ( 383) AGACAGGAGGGTGTGAAGGAG 1 8827 ( 300) AGAAAGGGTAGGGTGGAGCAG 1 260832 ( 273) AGGCAGGGAGGAGAGGAGGAG 1 968 ( 238) TGAAAGGGGGGGATGCAGCAG 1 264925 ( 332) AGAAAGAATAGGGAAGAGGAG 1 4225 ( 150) CGTCTGGAGGAGGAGGAGGAG 1 1407 ( 269) AGGAAGAAGGAAGAGAAGGAC 1 6348 ( 314) AGCCAGAGGAAGCAGCGGGAG 1 1685 ( 201) ACACAGCGTCGGCTGCAGCAG 1 8954 ( 360) CGTAAGAGCCGAAAGGAGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 13920 bayes= 10.6596 E= 3.5e-007 144 -28 -1010 -158 -1010 -128 193 -1010 102 -128 -39 -58 76 130 -1010 -1010 176 -1010 -1010 -158 -1010 -1010 207 -1010 44 -128 119 -1010 76 -1010 119 -1010 -156 -128 119 1 2 -28 119 -1010 2 -1010 161 -1010 2 -1010 119 -58 -56 -28 141 -1010 102 -1010 -1010 74 -156 -1010 193 -1010 2 30 93 -1010 176 -1010 -139 -1010 -1010 -1010 207 -1010 -1010 72 141 -1010 190 -1010 -1010 -1010 -1010 -128 193 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 11 E= 3.5e-007 0.727273 0.181818 0.000000 0.090909 0.000000 0.090909 0.909091 0.000000 0.545455 0.090909 0.181818 0.181818 0.454545 0.545455 0.000000 0.000000 0.909091 0.000000 0.000000 0.090909 0.000000 0.000000 1.000000 0.000000 0.363636 0.090909 0.545455 0.000000 0.454545 0.000000 0.545455 0.000000 0.090909 0.090909 0.545455 0.272727 0.272727 0.181818 0.545455 0.000000 0.272727 0.000000 0.727273 0.000000 0.272727 0.000000 0.545455 0.181818 0.181818 0.181818 0.636364 0.000000 0.545455 0.000000 0.000000 0.454545 0.090909 0.000000 0.909091 0.000000 0.272727 0.272727 0.454545 0.000000 0.909091 0.000000 0.090909 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.363636 0.636364 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.090909 0.909091 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- AGA[CA]AG[GA][GA][GT][GA][GA][GA]G[AT]G[GAC]AG[GC]AG -------------------------------------------------------------------------------- Time 14.25 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 16 sites = 14 llr = 180 E-value = 1.2e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :11:12::::1:1::: pos.-specific C 14:24::::54::1:2 probability G 9:163813a::a3:a: matrix T 14821:97:55:69:8 bits 2.2 2.0 * * * 1.7 * * * 1.5 * * ** Relative 1.3 * ** * * ** Entropy 1.1 * ***** * *** (18.6 bits) 0.9 * * ***** * *** 0.7 **** *********** 0.4 **** *********** 0.2 **************** 0.0 ---------------- Multilevel GCTGCGTTGCTGTTGT consensus T CGA G TC G C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 9263 94 1.27e-08 TTGTAGACTT GCTCCGTTGTTGTTGT TCTCATGCGA 37585 23 2.81e-08 CGAAGTGGTG GTTCCGTTGCCGGTGT TGTTATTGGA 10102 24 2.81e-08 CGAAGTGGTG GTTCCGTTGCCGGTGT TGTTATTGGA 968 111 2.32e-07 TGATGGATGA GTTGTGTGGTTGGTGT TGCTCGGTGA 6942 225 2.59e-07 GGTGGTGGGT GATGGGTTGCTGATGT AGTGAGGTTG 270212 321 4.45e-07 TCGTTTGCTG GCTGGATGGCCGTTGC AGCGGTGGAT 22673 322 4.45e-07 TCGTTTGCTG GCTGGATGGCCGTTGC AGCGGTGGAT 262860 159 5.89e-07 GAGCTGTGGT GTAGTGTTGCTGTTGT ACATCCAGGG 6348 290 7.06e-07 GTTGGAGAGA GCTGAGGTGCTGTTGC TGTGGAATAG 260832 415 1.32e-06 AGCGACAGTT GATGAGTTGTAGTTGT ATCACAGTTG 21383 229 1.32e-06 GTGAGAGCTT GTGGCATTGTTGATGT TGTTAATAAT 10279 100 1.63e-06 CGCAGAGCAT GCGTCGGTGTCGGTGT CGGTGGAAGG 1773 113 1.87e-06 TTCACTCTAC CTTTGGTGGTTGTTGT GCTGGACTGA 22424 76 4.15e-06 GTCGTCTGTT TCTTCGTTGTCGTCGT AAATCATCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 9263 1.3e-08 93_[+3]_391 37585 2.8e-08 22_[+3]_462 10102 2.8e-08 23_[+3]_461 968 2.3e-07 110_[+3]_374 6942 2.6e-07 224_[+3]_260 270212 4.5e-07 320_[+3]_164 22673 4.5e-07 321_[+3]_163 262860 5.9e-07 158_[+3]_326 6348 7.1e-07 289_[+3]_195 260832 1.3e-06 414_[+3]_70 21383 1.3e-06 228_[+3]_256 10279 1.6e-06 99_[+3]_385 1773 1.9e-06 112_[+3]_372 22424 4.2e-06 75_[+3]_409 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=16 seqs=14 9263 ( 94) GCTCCGTTGTTGTTGT 1 37585 ( 23) GTTCCGTTGCCGGTGT 1 10102 ( 24) GTTCCGTTGCCGGTGT 1 968 ( 111) GTTGTGTGGTTGGTGT 1 6942 ( 225) GATGGGTTGCTGATGT 1 270212 ( 321) GCTGGATGGCCGTTGC 1 22673 ( 322) GCTGGATGGCCGTTGC 1 262860 ( 159) GTAGTGTTGCTGTTGT 1 6348 ( 290) GCTGAGGTGCTGTTGC 1 260832 ( 415) GATGAGTTGTAGTTGT 1 21383 ( 229) GTGGCATTGTTGATGT 1 10279 ( 100) GCGTCGGTGTCGGTGT 1 1773 ( 113) CTTTGGTGGTTGTTGT 1 22424 ( 76) TCTTCGTTGTCGTCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 14065 bayes= 9.81475 E= 1.2e-004 -1045 -163 184 -192 -91 95 -1045 66 -191 -1045 -74 153 -1045 -5 126 -34 -91 95 26 -93 -32 -1045 172 -1045 -1045 -1045 -74 166 -1045 -1045 26 139 -1045 -1045 207 -1045 -1045 118 -1045 88 -191 95 -1045 88 -1045 -1045 207 -1045 -91 -1045 26 107 -1045 -163 -1045 177 -1045 -1045 207 -1045 -1045 -5 -1045 153 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 14 E= 1.2e-004 0.000000 0.071429 0.857143 0.071429 0.142857 0.428571 0.000000 0.428571 0.071429 0.000000 0.142857 0.785714 0.000000 0.214286 0.571429 0.214286 0.142857 0.428571 0.285714 0.142857 0.214286 0.000000 0.785714 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.071429 0.428571 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.142857 0.000000 0.285714 0.571429 0.000000 0.071429 0.000000 0.928571 0.000000 0.000000 1.000000 0.000000 0.000000 0.214286 0.000000 0.785714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- G[CT]T[GCT][CG][GA]T[TG]G[CT][TC]G[TG]TG[TC] -------------------------------------------------------------------------------- Time 21.22 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10102 6.67e-07 23_[+3(2.81e-08)]_410_\ [+1(1.27e-06)]_31 10279 6.67e-05 99_[+3(1.63e-06)]_364_\ [+1(3.03e-06)]_1 10571 7.51e-03 479_[+1(2.07e-06)]_1 1407 3.46e-07 268_[+2(5.46e-08)]_108_\ [+1(2.10e-07)]_5_[+1(2.20e-05)]_58 1685 9.14e-07 159_[+1(2.33e-07)]_21_\ [+2(1.29e-07)]_279 1773 2.84e-03 112_[+3(1.87e-06)]_372 21383 1.08e-02 228_[+3(1.32e-06)]_256 22424 1.99e-02 75_[+3(4.15e-06)]_409 22673 2.03e-15 321_[+3(4.45e-07)]_45_\ [+2(1.83e-10)]_76_[+1(2.57e-10)]_1 22852 3.01e-03 406_[+1(6.88e-07)]_74 23129 9.00e-03 465_[+1(2.42e-06)]_15 260832 7.15e-09 272_[+2(1.46e-09)]_121_\ [+3(1.32e-06)]_70 261766 1.97e-01 500 262860 4.77e-03 158_[+3(5.89e-07)]_326 264925 3.17e-08 331_[+2(1.16e-08)]_128_\ [+1(4.29e-07)] 270212 2.03e-15 320_[+3(4.45e-07)]_45_\ [+2(1.83e-10)]_76_[+1(2.57e-10)]_2 2936 7.25e-03 365_[+1(1.63e-06)]_115 3153 2.82e-02 474_[+1(3.76e-06)]_6 31778 6.79e-05 297_[+1(7.65e-08)]_183 3481 7.39e-01 500 37585 6.67e-07 22_[+3(2.81e-08)]_410_\ [+1(1.27e-06)]_32 4225 1.25e-07 149_[+2(2.10e-08)]_246_\ [+1(3.89e-07)]_64 6348 5.70e-09 26_[+3(5.38e-05)]_247_\ [+3(7.06e-07)]_8_[+2(9.66e-08)]_91_[+1(2.24e-06)]_55 6942 2.10e-05 224_[+3(2.59e-07)]_183_\ [+1(1.18e-05)]_57 8827 3.42e-13 299_[+2(3.38e-10)]_157_\ [+1(7.62e-12)]_3 8954 2.08e-06 359_[+2(1.78e-07)]_85_\ [+1(9.01e-07)]_15 9097 6.71e-05 474_[+1(3.48e-09)]_6 9263 4.07e-07 93_[+3(1.27e-08)]_162_\ [+3(7.09e-05)]_183_[+1(1.92e-06)]_10 968 4.34e-10 110_[+3(2.32e-07)]_111_\ [+2(8.83e-09)]_28_[+3(2.02e-05)]_171_[+1(4.63e-06)]_7 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************