******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/323/323.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10615 1.0000 500 22252 1.0000 500 22321 1.0000 500 2318 1.0000 500 23714 1.0000 500 23769 1.0000 500 25380 1.0000 500 25496 1.0000 500 260852 1.0000 500 264801 1.0000 500 269255 1.0000 500 29000 1.0000 500 33970 1.0000 500 3895 1.0000 500 5270 1.0000 500 5309 1.0000 500 5698 1.0000 500 6659 1.0000 500 7448 1.0000 500 9155 1.0000 500 9724 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/323/323.seqs.fa -oc motifs/323 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 21 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 10500 N= 21 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.258 C 0.231 G 0.249 T 0.262 Background letter frequencies (from dataset with add-one prior applied): A 0.258 C 0.231 G 0.249 T 0.262 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 20 llr = 228 E-value = 1.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 14::::24:11:6::413::4 pos.-specific C 4188:852435a276273675 probability G 5:::211:152::22:21511 matrix T 162291356231313514:21 bits 2.1 1.9 * 1.7 * 1.5 * Relative 1.3 **** * Entropy 1.1 **** * * (16.4 bits) 0.8 **** * * * ** 0.6 ***** * **** * ** 0.4 ********* ****** *** 0.2 ********************* 0.0 --------------------- Multilevel GTCCTCCTTGCCACCTCTCCC consensus CATT TACCT TGTAGAGTA sequence TG C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 25496 414 2.28e-10 CTCCGTTCTC CACCTCCTTTCCACCTCTGCC GCAACAACGA 33970 461 8.24e-09 CGTAATCAAC CTCCTCCTTGCCACTTACCCC CACAAGAACC 23769 164 2.05e-08 CTGCCTTCGC GTCCTCCTCGCCAGCACCCCT ACCCTCTGTT 10615 348 4.14e-08 GTCTGCCTCA CACCTCTTCTGCACCACCCCA CAACTCGTAG 5698 18 7.04e-08 TTGACTCAAG GTCCTCTCTTCCCCTTCTCCA TCCTTCGTCT 29000 15 3.34e-07 GTCCTACCTC GACCGCAATGCCACCCCTCTC AAGACGACGG 23714 250 5.16e-07 GTACAGCTTT GTCCTTCACCGCACTTGTCCC ATTCTGCGAG 5309 440 9.56e-07 AATCCCTTCG TTCCTCACGGCCACCACTGCC ATTGCCACGG 9724 427 1.28e-06 CCAAGAAAGA GTCCTCTTTGTCTCCAAAGGA ATGTATCGGA 6659 435 1.87e-06 ATCATCAGAG CATCTCACTGTCTCCTCTGTC AACTCCGTCG 3895 225 1.87e-06 CTGTGCGATG GACCTCTTTCACAGCACCGCT GGCTCAACTC 269255 395 3.79e-06 CAACCGGGTT CCTCTCTATCTCCCTACACCC CAGCCCCTTC 5270 478 4.13e-06 GTTCCTTCTT GTCTTCCACACCTCCACAGCG AC 22252 142 4.88e-06 GTTGATGACT GTCCTCGTCGTCATGTGAGCC ATCAGCTACG 2318 456 6.22e-06 AATAGCGGCA CACTTCCTCCGCTCGCCGCCA TTAATACTAT 22321 477 8.50e-06 CCATTTCGAC AACCGGCACCCCACCCCACCA AAG 7448 49 3.18e-05 ACAGACTGGC TATTTGCTTGCCTCCTGACTC CGCGTGCAGC 9155 40 3.83e-05 AACGACTCAC CTCCTTCTTGTCATGTTGGCA TGTTTTGCTG 260852 287 4.06e-05 GGATTTCTTG GTCTGCCATTGCCGCTGTCGA GAGAGTTGCT 25380 399 5.15e-05 CATCTGAACT GTTCTCTATCTTCGTTCCGTC AAATATATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 25496 2.3e-10 413_[+1]_66 33970 8.2e-09 460_[+1]_19 23769 2e-08 163_[+1]_316 10615 4.1e-08 347_[+1]_132 5698 7e-08 17_[+1]_462 29000 3.3e-07 14_[+1]_465 23714 5.2e-07 249_[+1]_230 5309 9.6e-07 439_[+1]_40 9724 1.3e-06 426_[+1]_53 6659 1.9e-06 434_[+1]_45 3895 1.9e-06 224_[+1]_255 269255 3.8e-06 394_[+1]_85 5270 4.1e-06 477_[+1]_2 22252 4.9e-06 141_[+1]_338 2318 6.2e-06 455_[+1]_24 22321 8.5e-06 476_[+1]_3 7448 3.2e-05 48_[+1]_431 9155 3.8e-05 39_[+1]_440 260852 4.1e-05 286_[+1]_193 25380 5.1e-05 398_[+1]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=20 25496 ( 414) CACCTCCTTTCCACCTCTGCC 1 33970 ( 461) CTCCTCCTTGCCACTTACCCC 1 23769 ( 164) GTCCTCCTCGCCAGCACCCCT 1 10615 ( 348) CACCTCTTCTGCACCACCCCA 1 5698 ( 18) GTCCTCTCTTCCCCTTCTCCA 1 29000 ( 15) GACCGCAATGCCACCCCTCTC 1 23714 ( 250) GTCCTTCACCGCACTTGTCCC 1 5309 ( 440) TTCCTCACGGCCACCACTGCC 1 9724 ( 427) GTCCTCTTTGTCTCCAAAGGA 1 6659 ( 435) CATCTCACTGTCTCCTCTGTC 1 3895 ( 225) GACCTCTTTCACAGCACCGCT 1 269255 ( 395) CCTCTCTATCTCCCTACACCC 1 5270 ( 478) GTCTTCCACACCTCCACAGCG 1 22252 ( 142) GTCCTCGTCGTCATGTGAGCC 1 2318 ( 456) CACTTCCTCCGCTCGCCGCCA 1 22321 ( 477) AACCGGCACCCCACCCCACCA 1 7448 ( 49) TATTTGCTTGCCTCCTGACTC 1 9155 ( 40) CTCCTTCTTGTCATGTTGGCA 1 260852 ( 287) GTCTGCCATTGCCGCTGTCGA 1 25380 ( 399) GTTCTCTATCTTCGTTCCGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 10080 bayes= 9.22641 E= 1.1e-003 -237 60 101 -139 63 -221 -1097 107 -1097 179 -1097 -39 -1097 179 -1097 -39 -1097 -1097 -73 170 -1097 179 -131 -139 -78 111 -231 20 44 -62 -1097 93 -1097 60 -231 120 -237 37 85 -39 -237 96 -32 20 -1097 204 -1097 -238 109 -21 -1097 -6 -1097 160 -32 -139 -1097 137 -73 -6 44 -62 -1097 93 -137 149 -32 -238 22 11 -131 42 -1097 125 85 -1097 -1097 160 -131 -39 44 111 -231 -139 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 20 E= 1.1e-003 0.050000 0.350000 0.500000 0.100000 0.400000 0.050000 0.000000 0.550000 0.000000 0.800000 0.000000 0.200000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.150000 0.850000 0.000000 0.800000 0.100000 0.100000 0.150000 0.500000 0.050000 0.300000 0.350000 0.150000 0.000000 0.500000 0.000000 0.350000 0.050000 0.600000 0.050000 0.300000 0.450000 0.200000 0.050000 0.450000 0.200000 0.300000 0.000000 0.950000 0.000000 0.050000 0.550000 0.200000 0.000000 0.250000 0.000000 0.700000 0.200000 0.100000 0.000000 0.600000 0.150000 0.250000 0.350000 0.150000 0.000000 0.500000 0.100000 0.650000 0.200000 0.050000 0.300000 0.250000 0.100000 0.350000 0.000000 0.550000 0.450000 0.000000 0.000000 0.700000 0.100000 0.200000 0.350000 0.500000 0.050000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [GC][TA][CT][CT]TC[CT][TA][TC][GCT][CTG]C[ATC][CG][CT][TA][CG][TAC][CG][CT][CA] -------------------------------------------------------------------------------- Time 4.23 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 19 llr = 216 E-value = 1.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 24:32:1:2153131262:61 pos.-specific C :42:2::::2:2:1:::3::1 probability G 722611752723934823a:: matrix T 216159356:42:35:33:48 bits 2.1 1.9 * 1.7 * * 1.5 * * * Relative 1.3 * * * * * Entropy 1.1 * * * * *** (16.4 bits) 0.8 * *** * * * *** 0.6 * ** ***** * *** *** 0.4 **** ****** * *** *** 0.2 *********** * *** *** 0.0 --------------------- Multilevel GATGTTGGTGAGGATGACGAT consensus CGAA TTACTA TGATG T sequence G C G T T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 22321 201 2.24e-10 GCCTGATGCC GATGTTGGTGTAGGGGACGAT CTATCGGTGG 22252 114 7.06e-09 TGTGGATGCT GCTGTTGTTGTTGTTGTTGTT GATGACTGTC 5698 153 8.47e-09 GGCAAGGTCC GATATTGTAGTGGTGGACGAT GGGAGGGAGA 9724 78 2.91e-08 AGCTGTAGTA GAGGATGTTGAGGTGGAAGTT TGGGGGTGCG 264801 214 6.28e-08 GGTCATTGAG GAGATTTGTGATGATGATGAT ATCGAGGAAG 2318 157 7.80e-07 ATGTCAGGAA GATGTTTGACACGTGAACGAT TGTCACTTTT 10615 65 7.80e-07 TGCGCTGTGG TCTGCTGGGGTGGGTGTGGTT TGAATGGTGA 6659 123 9.63e-07 CACCGACGGT GACGGTGGAGGAGAGGAGGAT GAGTAATGCA 7448 355 1.07e-06 ATGCGATCTC GGTTTTGGTCGAGGTGACGAT GACAGTTCTT 5270 13 1.59e-06 TCCGGCGCAA GCTGAGGGTGTTGATGTTGTT GGATTCCAAT 33970 63 2.78e-06 TGGGAAGTGT GGTGTTTGTATCGATGGGGTT CTTTACGTGG 23714 155 3.04e-06 GCATAGCGTC GCTGGTGGGGAGATTAAAGAT TGTCGTGTCG 269255 50 5.90e-06 TGAAGTGAGG ACCATTGTTGACGTTGTAGAC ATAATCATCA 23769 64 9.98e-06 CGTTTATTAG TAGATTGTTGACGGGAAGGTC TCTGGACGCA 29000 380 1.72e-05 TTCGTCAGGA GGTGTTTGTCATGCAAATGAT TCACTATTTT 260852 189 1.72e-05 GTTGACACCA TCGGATGTGATGGGTGGCGTT GGCTCGATGA 3895 308 4.55e-05 AGGTACTATG GCCTCTATAGAAGAGGGTGTT GCTTTTTGTT 25380 315 5.28e-05 GCTATCGTAC AATACTGTTCGAACTGTAGAT CATAGAACAT 9155 112 5.55e-05 GGATCAAAAG ATTAATTTGGAGGAGGAGGAA ATATGGCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 22321 2.2e-10 200_[+2]_279 22252 7.1e-09 113_[+2]_366 5698 8.5e-09 152_[+2]_327 9724 2.9e-08 77_[+2]_402 264801 6.3e-08 213_[+2]_266 2318 7.8e-07 156_[+2]_323 10615 7.8e-07 64_[+2]_415 6659 9.6e-07 122_[+2]_357 7448 1.1e-06 354_[+2]_125 5270 1.6e-06 12_[+2]_467 33970 2.8e-06 62_[+2]_417 23714 3e-06 154_[+2]_325 269255 5.9e-06 49_[+2]_430 23769 1e-05 63_[+2]_416 29000 1.7e-05 379_[+2]_100 260852 1.7e-05 188_[+2]_291 3895 4.6e-05 307_[+2]_172 25380 5.3e-05 314_[+2]_165 9155 5.5e-05 111_[+2]_368 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=19 22321 ( 201) GATGTTGGTGTAGGGGACGAT 1 22252 ( 114) GCTGTTGTTGTTGTTGTTGTT 1 5698 ( 153) GATATTGTAGTGGTGGACGAT 1 9724 ( 78) GAGGATGTTGAGGTGGAAGTT 1 264801 ( 214) GAGATTTGTGATGATGATGAT 1 2318 ( 157) GATGTTTGACACGTGAACGAT 1 10615 ( 65) TCTGCTGGGGTGGGTGTGGTT 1 6659 ( 123) GACGGTGGAGGAGAGGAGGAT 1 7448 ( 355) GGTTTTGGTCGAGGTGACGAT 1 5270 ( 13) GCTGAGGGTGTTGATGTTGTT 1 33970 ( 63) GGTGTTTGTATCGATGGGGTT 1 23714 ( 155) GCTGGTGGGGAGATTAAAGAT 1 269255 ( 50) ACCATTGTTGACGTTGTAGAC 1 23769 ( 64) TAGATTGTTGACGGGAAGGTC 1 29000 ( 380) GGTGTTTGTCATGCAAATGAT 1 260852 ( 189) TCGGATGTGATGGGTGGCGTT 1 3895 ( 308) GCCTCTATAGAAGAGGGTGTT 1 25380 ( 315) AATACTGTTCGAACTGTAGAT 1 9155 ( 112) ATTAATTTGGAGGAGGAGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 10080 bayes= 9.24372 E= 1.4e-002 -71 -1089 146 -73 71 67 -66 -231 -1089 -55 -24 127 29 -1089 122 -131 -29 -55 -124 101 -1089 -1089 -224 186 -229 -1089 146 1 -1089 -1089 108 86 -29 -1089 -24 115 -129 -14 146 -1089 88 -1089 -66 49 3 -14 34 -31 -129 -1089 185 -1089 29 -114 8 27 -229 -1089 76 101 -29 -1089 166 -1089 116 -1089 -66 1 -29 19 8 1 -1089 -1089 201 -1089 116 -1089 -1089 69 -229 -114 -1089 169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 19 E= 1.4e-002 0.157895 0.000000 0.684211 0.157895 0.421053 0.368421 0.157895 0.052632 0.000000 0.157895 0.210526 0.631579 0.315789 0.000000 0.578947 0.105263 0.210526 0.157895 0.105263 0.526316 0.000000 0.000000 0.052632 0.947368 0.052632 0.000000 0.684211 0.263158 0.000000 0.000000 0.526316 0.473684 0.210526 0.000000 0.210526 0.578947 0.105263 0.210526 0.684211 0.000000 0.473684 0.000000 0.157895 0.368421 0.263158 0.210526 0.315789 0.210526 0.105263 0.000000 0.894737 0.000000 0.315789 0.105263 0.263158 0.315789 0.052632 0.000000 0.421053 0.526316 0.210526 0.000000 0.789474 0.000000 0.578947 0.000000 0.157895 0.263158 0.210526 0.263158 0.263158 0.263158 0.000000 0.000000 1.000000 0.000000 0.578947 0.000000 0.000000 0.421053 0.052632 0.105263 0.000000 0.842105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- G[AC][TG][GA][TA]T[GT][GT][TAG][GC][AT][GACT]G[ATG][TG][GA][AT][CGTA]G[AT]T -------------------------------------------------------------------------------- Time 8.37 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 20 sites = 6 llr = 105 E-value = 3.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A ::572:8:837352a:852: pos.-specific C 3a2:8a:7253558:a:288 probability G 7:23:::3:2:2:::::3:: matrix T ::2:::2:::::::::2::2 bits 2.1 * * * 1.9 * * ** 1.7 * * ** 1.5 * ** *** ** Relative 1.3 * *** * **** ** Entropy 1.1 ** ****** * ***** ** (25.3 bits) 0.8 ** ****** * ***** ** 0.6 ** ***************** 0.4 ** ***************** 0.2 ******************** 0.0 -------------------- Multilevel GCAACCACACACACACAACC consensus C G G ACAC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 23769 440 6.00e-11 GACACCGTCG GCAGCCACACAAACACAGCC GCAGCGTCGG 10615 168 1.29e-10 TCTTCCGTCC GCAACCAGACAGCCACAACC AACAACCCCT 269255 366 4.98e-09 TACTCTTCCA CCGACCAGCAACCCACAACC AACCGGGTTC 5698 463 1.23e-08 TCGCTGGCAC GCCAACACACACACACTCCC GTCCACACTC 5309 278 2.08e-08 CAACCTACTA GCTACCACAACACAACAACT GACGACTAAT 22252 435 3.48e-08 TGATTCGCCT CCAGCCTCAGCCACACAGAC CAGACAAAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 23769 6e-11 439_[+3]_41 10615 1.3e-10 167_[+3]_313 269255 5e-09 365_[+3]_115 5698 1.2e-08 462_[+3]_18 5309 2.1e-08 277_[+3]_203 22252 3.5e-08 434_[+3]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=20 seqs=6 23769 ( 440) GCAGCCACACAAACACAGCC 1 10615 ( 168) GCAACCAGACAGCCACAACC 1 269255 ( 366) CCGACCAGCAACCCACAACC 1 5698 ( 463) GCCAACACACACACACTCCC 1 5309 ( 278) GCTACCACAACACAACAACT 1 22252 ( 435) CCAGCCTCAGCCACACAGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 10101 bayes= 10.3751 E= 3.6e+001 -923 53 142 -923 -923 211 -923 -923 95 -47 -58 -65 137 -923 42 -923 -63 185 -923 -923 -923 211 -923 -923 169 -923 -923 -65 -923 153 42 -923 169 -47 -923 -923 37 111 -58 -923 137 53 -923 -923 37 111 -58 -923 95 111 -923 -923 -63 185 -923 -923 195 -923 -923 -923 -923 211 -923 -923 169 -923 -923 -65 95 -47 42 -923 -63 185 -923 -923 -923 185 -923 -65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 6 E= 3.6e+001 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.166667 0.166667 0.166667 0.666667 0.000000 0.333333 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 0.000000 0.666667 0.333333 0.000000 0.833333 0.166667 0.000000 0.000000 0.333333 0.500000 0.166667 0.000000 0.666667 0.333333 0.000000 0.000000 0.333333 0.500000 0.166667 0.000000 0.500000 0.500000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 0.500000 0.166667 0.333333 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 0.833333 0.000000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [GC]CA[AG]CCA[CG]A[CA][AC][CA][AC]CACA[AG]CC -------------------------------------------------------------------------------- Time 12.28 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10615 3.04e-13 64_[+2(7.80e-07)]_82_[+3(1.29e-10)]_\ 160_[+1(4.14e-08)]_132 22252 6.24e-11 54_[+2(4.32e-05)]_38_[+2(7.06e-09)]_\ 7_[+1(4.88e-06)]_272_[+3(3.48e-08)]_46 22321 1.35e-09 200_[+2(2.24e-10)]_227_\ [+3(1.72e-05)]_8_[+1(8.50e-06)]_3 2318 8.88e-05 156_[+2(7.80e-07)]_278_\ [+1(6.22e-06)]_24 23714 3.41e-05 154_[+2(3.04e-06)]_74_\ [+1(5.16e-07)]_230 23769 8.43e-13 63_[+2(9.98e-06)]_79_[+1(2.05e-08)]_\ 255_[+3(6.00e-11)]_41 25380 1.22e-02 314_[+2(5.28e-05)]_63_\ [+1(5.15e-05)]_81 25496 6.70e-06 413_[+1(2.28e-10)]_66 260852 2.50e-03 188_[+2(1.72e-05)]_77_\ [+1(4.06e-05)]_193 264801 8.50e-05 142_[+3(5.25e-05)]_51_\ [+2(6.28e-08)]_266 269255 4.22e-09 49_[+2(5.90e-06)]_295_\ [+3(4.98e-09)]_9_[+1(3.79e-06)]_85 29000 1.59e-05 14_[+1(3.34e-07)]_344_\ [+2(1.72e-05)]_100 33970 7.63e-07 62_[+2(2.78e-06)]_377_\ [+1(8.24e-09)]_19 3895 3.24e-04 224_[+1(1.87e-06)]_62_\ [+2(4.55e-05)]_172 5270 3.62e-05 12_[+2(1.59e-06)]_444_\ [+1(4.13e-06)]_2 5309 5.18e-07 277_[+3(2.08e-08)]_118_\ [+3(2.39e-05)]_4_[+1(9.56e-07)]_40 5698 5.21e-13 17_[+1(7.04e-08)]_114_\ [+2(8.47e-09)]_289_[+3(1.23e-08)]_18 6659 4.75e-06 122_[+2(9.63e-07)]_156_\ [+1(1.23e-05)]_114_[+1(1.87e-06)]_45 7448 4.92e-04 48_[+1(3.18e-05)]_285_\ [+2(1.07e-06)]_125 9155 1.60e-02 39_[+1(3.83e-05)]_51_[+2(5.55e-05)]_\ 368 9724 1.19e-06 77_[+2(2.91e-08)]_328_\ [+1(1.28e-06)]_53 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************