******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/331/331.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10013 1.0000 500 10016 1.0000 500 10164 1.0000 500 10955 1.0000 500 11295 1.0000 500 11846 1.0000 500 11855 1.0000 500 17310 1.0000 500 20904 1.0000 500 23301 1.0000 500 23545 1.0000 500 23916 1.0000 500 24496 1.0000 500 24594 1.0000 500 24757 1.0000 500 24952 1.0000 500 25472 1.0000 500 261883 1.0000 500 2893 1.0000 500 3478 1.0000 500 38186 1.0000 500 41690 1.0000 500 4174 1.0000 500 42687 1.0000 500 7231 1.0000 500 8258 1.0000 500 8308 1.0000 500 8611 1.0000 500 9009 1.0000 500 9594 1.0000 500 bd409 1.0000 500 bd623 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/331/331.seqs.fa -oc motifs/331 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 32 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 16000 N= 32 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.277 C 0.228 G 0.235 T 0.260 Background letter frequencies (from dataset with add-one prior applied): A 0.277 C 0.228 G 0.235 T 0.260 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 16 sites = 27 llr = 280 E-value = 1.1e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 6:3a42721a8:7213 pos.-specific C 277:38:29:191166 probability G 22::3:12::1::3:2 matrix T :1::::24::::242: bits 2.1 1.9 * 1.7 * * * 1.5 * ** * Relative 1.3 ** * ** * Entropy 1.1 ** * **** (15.0 bits) 0.9 ** ** **** 0.6 **** ** ***** ** 0.4 ******* ***** ** 0.2 ******* ******** 0.0 ---------------- Multilevel ACCAACATCAACATCC consensus C A CATC GTA sequence G G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 23916 468 3.47e-09 CCAAACGTGC ACCAACAACAACATCC AGCACAAAAC 24757 117 1.63e-08 CCTCATCAGT GCCAACACCAACATCC ACCATTGAAG 11295 483 4.06e-07 CACACCCTCC CCAAGCACCAACAACC AC 10013 170 4.06e-07 ACAACTAGAT ACCAACATCACCAGCA GTGGTGCTTC 8611 215 4.65e-07 ACAGACATCA ATCACCATCAACATTC TTCATTTCAG 2893 113 5.30e-07 GACTCTGTGT ACCAGCAACACCAGCC TTCCTTTTCT 11846 128 6.06e-07 AGGAGAGAGG AGCAACATCAACACCA AATACGGTTA 24594 470 7.78e-07 TCCCTAACCA ACCACAAACAACAGCA CTGCCAGTAG 10016 313 7.78e-07 AGGTATTTCT GCCACCATCAACACTC CCTCTCGAAG 10164 30 1.42e-06 GATGGAGGCA ACCAGCACCAGCATCG CTCACTATTT bd623 106 1.78e-06 TTCTGATGAT ACAACAATCAACATAC GCCTACTTTC 8258 157 1.99e-06 AGAATGCAAA AACAACACCAACATCA TCGTCGTCGT 9009 485 2.47e-06 AAAGCAAACC ATCAACGTCAACAACC 41690 414 2.47e-06 GTGTTGTGAC ACAAACTTCAACTTCG GATCTGTGCT 3478 479 3.73e-06 CTCAAAGACA CCCAAAAGCAACCACC GGGGAG 24496 46 3.73e-06 GAACAAGGTG GCAAGCATCAACTTTC ACTTATTCTA 261883 466 8.68e-06 CAAATAACAA GCCAAATACAACAGCG TCAAACACAC 11855 183 1.33e-05 CATTACCGTG ACAAGAAACAACAGTG CCAAGGAAGA 25472 423 1.44e-05 GGGGGACGAT AGAAACACAAACATCA ATTGATGCAA 38186 49 2.88e-05 CAGTCTCCAT CGCACCGTCAACTGTC AAGCATGCTC 10955 103 3.32e-05 GAGGTCGCCC CTCACCTTCAACAAAG ACGTCGGGGC bd409 284 4.09e-05 GCCCGAAGAA AGCAGCAGGAGCATCC GCGGTGTCCT 17310 334 4.09e-05 TTCTTTCATC CCCACCTGCCACCGCC TGTAGAGACT 8308 236 4.68e-05 TAGATACTAC CCAAACAGCAAGCACC CAACACTCAA 7231 440 7.31e-05 GCTTGACGCG ACCAACAGCAAATAAA AAACAAAAAC 9594 484 1.45e-04 CATCGCTTCC GGCACATCCAACTCAC C 42687 275 1.52e-04 GCGTGGAACA ACAAGCTGAACCATTA ACTGAGTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 23916 3.5e-09 467_[+1]_17 24757 1.6e-08 116_[+1]_368 11295 4.1e-07 482_[+1]_2 10013 4.1e-07 169_[+1]_315 8611 4.6e-07 214_[+1]_270 2893 5.3e-07 112_[+1]_372 11846 6.1e-07 127_[+1]_357 24594 7.8e-07 469_[+1]_15 10016 7.8e-07 312_[+1]_172 10164 1.4e-06 29_[+1]_455 bd623 1.8e-06 105_[+1]_379 8258 2e-06 156_[+1]_328 9009 2.5e-06 484_[+1] 41690 2.5e-06 413_[+1]_71 3478 3.7e-06 478_[+1]_6 24496 3.7e-06 45_[+1]_439 261883 8.7e-06 465_[+1]_19 11855 1.3e-05 182_[+1]_302 25472 1.4e-05 422_[+1]_62 38186 2.9e-05 48_[+1]_436 10955 3.3e-05 102_[+1]_382 bd409 4.1e-05 283_[+1]_201 17310 4.1e-05 333_[+1]_151 8308 4.7e-05 235_[+1]_249 7231 7.3e-05 439_[+1]_45 9594 0.00014 483_[+1]_1 42687 0.00015 274_[+1]_210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=16 seqs=27 23916 ( 468) ACCAACAACAACATCC 1 24757 ( 117) GCCAACACCAACATCC 1 11295 ( 483) CCAAGCACCAACAACC 1 10013 ( 170) ACCAACATCACCAGCA 1 8611 ( 215) ATCACCATCAACATTC 1 2893 ( 113) ACCAGCAACACCAGCC 1 11846 ( 128) AGCAACATCAACACCA 1 24594 ( 470) ACCACAAACAACAGCA 1 10016 ( 313) GCCACCATCAACACTC 1 10164 ( 30) ACCAGCACCAGCATCG 1 bd623 ( 106) ACAACAATCAACATAC 1 8258 ( 157) AACAACACCAACATCA 1 9009 ( 485) ATCAACGTCAACAACC 1 41690 ( 414) ACAAACTTCAACTTCG 1 3478 ( 479) CCCAAAAGCAACCACC 1 24496 ( 46) GCAAGCATCAACTTTC 1 261883 ( 466) GCCAAATACAACAGCG 1 11855 ( 183) ACAAGAAACAACAGTG 1 25472 ( 423) AGAAACACAAACATCA 1 38186 ( 49) CGCACCGTCAACTGTC 1 10955 ( 103) CTCACCTTCAACAAAG 1 bd409 ( 284) AGCAGCAGGAGCATCC 1 17310 ( 334) CCCACCTGCCACCGCC 1 8308 ( 236) CCAAACAGCAAGCACC 1 7231 ( 440) ACCAACAGCAAATAAA 1 9594 ( 484) GGCACATCCAACTCAC 1 42687 ( 275) ACAAGCTGAACCATTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 15520 bayes= 9.73428 E= 1.1e-011 110 -4 -34 -1140 -290 155 -34 -123 10 163 -1140 -1140 185 -1140 -1140 -1140 68 38 14 -1140 -32 177 -1140 -1140 135 -1140 -167 -23 -58 -4 -8 51 -190 196 -266 -1140 180 -262 -1140 -1140 156 -104 -167 -1140 -290 202 -266 -1140 135 -104 -1140 -49 -32 -104 14 65 -90 146 -1140 -23 -9 128 -34 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 27 E= 1.1e-011 0.592593 0.222222 0.185185 0.000000 0.037037 0.666667 0.185185 0.111111 0.296296 0.703704 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.444444 0.296296 0.259259 0.000000 0.222222 0.777778 0.000000 0.000000 0.703704 0.000000 0.074074 0.222222 0.185185 0.222222 0.222222 0.370370 0.074074 0.888889 0.037037 0.000000 0.962963 0.037037 0.000000 0.000000 0.814815 0.111111 0.074074 0.000000 0.037037 0.925926 0.037037 0.000000 0.703704 0.111111 0.000000 0.185185 0.222222 0.111111 0.259259 0.407407 0.148148 0.629630 0.000000 0.222222 0.259259 0.555556 0.185185 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [AC]C[CA]A[ACG][CA][AT][TCG]CAACA[TGA][CT][CA] -------------------------------------------------------------------------------- Time 9.03 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 16 sites = 19 llr = 203 E-value = 2.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 2982::42:22121:: pos.-specific C 61225a139:38:151 probability G 2::3::111711::11 matrix T :1:35:5511518948 bits 2.1 * 1.9 * 1.7 * 1.5 * * Relative 1.3 ** * * ** * Entropy 1.1 ** ** * *** * (15.4 bits) 0.9 *** ** ** *** * 0.6 *** ** ** ***** 0.4 *** *** ******** 0.2 *** ************ 0.0 ---------------- Multilevel CAAGTCTTCGTCTTCT consensus G TC AC C A T sequence C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 25472 446 8.29e-10 TCAATTGATG CAATTCTTCGTCTTCT GTCTAATTTG 23301 119 3.09e-07 AATGACTGTC CACTTCAACGTCTTTT CTTTCCAGCT 9594 299 4.39e-07 TAAAATCAAG CAAATCTTCTTCTTTT TTGAAGGGCC 8308 330 4.39e-07 TTCACATGTA AAATCCACCGCCTTTT TCCAAGTAGA 10955 223 1.19e-06 CAAGGACGAA GAACCCTTCACCTTTT CAGATGGAAT 24496 206 1.32e-06 CCAGTGATCT CAATCCAACGTCTTTG CGTGCTTGAG 10013 399 3.17e-06 GGAAGTTGTT CAACTCTCCGCCTTGC CGACAGTTGC 41690 472 3.49e-06 TACATCACAT CACGCCCTCACCTTCT ACCATTCATC 11846 155 4.18e-06 ATACGGTTAG CAAGTCTACGTCACTT GTGGTAGAGG 3478 148 5.46e-06 AGGAGTCAGC ATATCCTCCGCCTTCT TGTTGGCATC 24952 37 6.47e-06 CACCTAAGAA GAAGTCATCGAATTCT AAGAAGAAGG 7231 191 9.01e-06 CGTTGGTCTG CAACTCTTCGGTATCT CGGTAGCTAT bd623 224 9.77e-06 ATCATCACCG CCATCCTCGGTCTTCT TTGAGCTTTT 10016 135 1.06e-05 CCTACGGATG AAAATCGTCGTCTTGT TGTAGAAGGT bd409 484 1.14e-05 TGATACAATT GACGTCATCTTCATCT C 38186 145 1.14e-05 CGGTATCGCA GAAGCCTGCATCATCT GCTTCATGAG 11295 141 1.24e-05 ATATACTTAT CAAACCAACGACTATT GGCTGTTTGG 9009 140 1.68e-05 AGAGGGCGGG CAACTCCTCGTGTTTC TCCAACCAGT 4174 256 2.10e-05 ACGATATTGC CAAGCCACTGATTTCT GTCCCCGGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 25472 8.3e-10 445_[+2]_39 23301 3.1e-07 118_[+2]_366 9594 4.4e-07 298_[+2]_186 8308 4.4e-07 329_[+2]_155 10955 1.2e-06 222_[+2]_262 24496 1.3e-06 205_[+2]_279 10013 3.2e-06 398_[+2]_86 41690 3.5e-06 471_[+2]_13 11846 4.2e-06 154_[+2]_330 3478 5.5e-06 147_[+2]_337 24952 6.5e-06 36_[+2]_448 7231 9e-06 190_[+2]_294 bd623 9.8e-06 223_[+2]_261 10016 1.1e-05 134_[+2]_350 bd409 1.1e-05 483_[+2]_1 38186 1.1e-05 144_[+2]_340 11295 1.2e-05 140_[+2]_344 9009 1.7e-05 139_[+2]_345 4174 2.1e-05 255_[+2]_229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=16 seqs=19 25472 ( 446) CAATTCTTCGTCTTCT 1 23301 ( 119) CACTTCAACGTCTTTT 1 9594 ( 299) CAAATCTTCTTCTTTT 1 8308 ( 330) AAATCCACCGCCTTTT 1 10955 ( 223) GAACCCTTCACCTTTT 1 24496 ( 206) CAATCCAACGTCTTTG 1 10013 ( 399) CAACTCTCCGCCTTGC 1 41690 ( 472) CACGCCCTCACCTTCT 1 11846 ( 155) CAAGTCTACGTCACTT 1 3478 ( 148) ATATCCTCCGCCTTCT 1 24952 ( 37) GAAGTCATCGAATTCT 1 7231 ( 191) CAACTCTTCGGTATCT 1 bd623 ( 224) CCATCCTCGGTCTTCT 1 10016 ( 135) AAAATCGTCGTCTTGT 1 bd409 ( 484) GACGTCATCTTCATCT 1 38186 ( 145) GAAGCCTGCATCATCT 1 11295 ( 141) CAAACCAACGACTATT 1 9009 ( 140) CAACTCCTCGTGTTTC 1 4174 ( 256) CAAGCCACTGATTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 15520 bayes= 9.86719 E= 2.0e+001 -81 147 -16 -1089 169 -211 -1089 -230 160 -53 -1089 -1089 -81 -12 42 28 -1089 105 -1089 102 -1089 213 -1089 -1089 41 -111 -216 87 -39 21 -216 87 -1089 197 -216 -230 -81 -1089 165 -130 -81 21 -216 102 -239 179 -216 -130 -39 -1089 -1089 160 -239 -211 -1089 178 -1089 105 -116 70 -1089 -111 -216 170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 19 E= 2.0e+001 0.157895 0.631579 0.210526 0.000000 0.894737 0.052632 0.000000 0.052632 0.842105 0.157895 0.000000 0.000000 0.157895 0.210526 0.315789 0.315789 0.000000 0.473684 0.000000 0.526316 0.000000 1.000000 0.000000 0.000000 0.368421 0.105263 0.052632 0.473684 0.210526 0.263158 0.052632 0.473684 0.000000 0.894737 0.052632 0.052632 0.157895 0.000000 0.736842 0.105263 0.157895 0.263158 0.052632 0.526316 0.052632 0.789474 0.052632 0.105263 0.210526 0.000000 0.000000 0.789474 0.052632 0.052632 0.000000 0.894737 0.000000 0.473684 0.105263 0.421053 0.000000 0.105263 0.052632 0.842105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [CG]AA[GTC][TC]C[TA][TCA]CG[TC]C[TA]T[CT]T -------------------------------------------------------------------------------- Time 17.43 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 5 llr = 99 E-value = 1.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 2:22:4:::22:::::::::: pos.-specific C :6:2::a6::::22::2:::: probability G 8::226:::62::88a88aa8 matrix T :4848::4a26a8:2::2::2 bits 2.1 * * ** 1.9 * * * * ** 1.7 * * * * ** 1.5 * * * * ** Relative 1.3 * * * * * ********** Entropy 1.1 *** ***** ********** (28.6 bits) 0.9 *** ***** ********** 0.6 *** ***************** 0.4 *** ***************** 0.2 *** ***************** 0.0 --------------------- Multilevel GCTTTGCCTGTTTGGGGGGGG consensus ATAAGA T AA CCT CT T sequence C TG G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 41690 231 5.97e-11 GAGGACGAGG GCTTTGCCTGTTTCGGGGGGT GCTGCTATTT 20904 228 7.37e-11 GTGGGTATTG GCTTTGCTTGATTGGGCGGGG GAGGCGCTCG 17310 407 5.02e-10 GGGCTCTCTG GTTCTGCCTTGTCGGGGGGGG CTAGGCACCA 8258 399 8.66e-10 TTGCTATTCA GCAAGACCTATTTGGGGGGGG GGGCAGCGAA 24496 259 3.55e-09 CAAAGAGGGA ATTGTACTTGTTTGTGGTGGG TTATCTATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 41690 6e-11 230_[+3]_249 20904 7.4e-11 227_[+3]_252 17310 5e-10 406_[+3]_73 8258 8.7e-10 398_[+3]_81 24496 3.6e-09 258_[+3]_221 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=5 41690 ( 231) GCTTTGCCTGTTTCGGGGGGT 1 20904 ( 228) GCTTTGCTTGATTGGGCGGGG 1 17310 ( 407) GTTCTGCCTTGTCGGGGGGGG 1 8258 ( 399) GCAAGACCTATTTGGGGGGGG 1 24496 ( 259) ATTGTACTTGTTTGTGGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 15360 bayes= 11.8361 E= 1.6e+003 -47 -897 176 -897 -897 139 -897 62 -47 -897 -897 162 -47 -19 -23 62 -897 -897 -23 162 53 -897 135 -897 -897 213 -897 -897 -897 139 -897 62 -897 -897 -897 194 -47 -897 135 -38 -47 -897 -23 121 -897 -897 -897 194 -897 -19 -897 162 -897 -19 176 -897 -897 -897 176 -38 -897 -897 209 -897 -897 -19 176 -897 -897 -897 176 -38 -897 -897 209 -897 -897 -897 209 -897 -897 -897 176 -38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 5 E= 1.6e+003 0.200000 0.000000 0.800000 0.000000 0.000000 0.600000 0.000000 0.400000 0.200000 0.000000 0.000000 0.800000 0.200000 0.200000 0.200000 0.400000 0.000000 0.000000 0.200000 0.800000 0.400000 0.000000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.000000 1.000000 0.200000 0.000000 0.600000 0.200000 0.200000 0.000000 0.200000 0.600000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [GA][CT][TA][TACG][TG][GA]C[CT]T[GAT][TAG]T[TC][GC][GT]G[GC][GT]GG[GT] -------------------------------------------------------------------------------- Time 25.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10013 9.37e-06 169_[+1(4.06e-07)]_213_\ [+2(3.17e-06)]_86 10016 1.15e-04 134_[+2(1.06e-05)]_162_\ [+1(7.78e-07)]_172 10164 7.19e-03 29_[+1(1.42e-06)]_131_\ [+1(7.77e-05)]_308 10955 1.34e-04 102_[+1(3.32e-05)]_104_\ [+2(1.19e-06)]_262 11295 3.34e-05 140_[+2(1.24e-05)]_326_\ [+1(4.06e-07)]_2 11846 6.21e-05 127_[+1(6.06e-07)]_11_\ [+2(4.18e-06)]_330 11855 1.39e-02 182_[+1(1.33e-05)]_302 17310 8.04e-08 333_[+1(4.09e-05)]_57_\ [+3(5.02e-10)]_73 20904 3.63e-06 227_[+3(7.37e-11)]_252 23301 3.50e-03 118_[+2(3.09e-07)]_366 23545 1.98e-01 500 23916 1.53e-04 307_[+1(7.26e-06)]_144_\ [+1(3.47e-09)]_17 24496 7.74e-10 45_[+1(3.73e-06)]_41_[+1(8.75e-05)]_\ 87_[+2(1.32e-06)]_37_[+3(3.55e-09)]_221 24594 9.18e-03 163_[+1(3.09e-05)]_290_\ [+1(7.78e-07)]_15 24757 1.36e-05 116_[+1(1.63e-08)]_368 24952 5.95e-02 36_[+2(6.47e-06)]_448 25472 1.39e-07 422_[+1(1.44e-05)]_7_[+2(8.29e-10)]_\ 39 261883 4.39e-02 465_[+1(8.68e-06)]_19 2893 4.51e-03 112_[+1(5.30e-07)]_372 3478 2.16e-04 147_[+2(5.46e-06)]_315_\ [+1(3.73e-06)]_6 38186 2.91e-03 48_[+1(2.88e-05)]_80_[+2(1.14e-05)]_\ 340 41690 2.88e-11 230_[+3(5.97e-11)]_162_\ [+1(2.47e-06)]_42_[+2(3.49e-06)]_13 4174 6.12e-02 255_[+2(2.10e-05)]_229 42687 4.00e-02 500 7231 3.31e-03 190_[+2(9.01e-06)]_233_\ [+1(7.31e-05)]_45 8258 1.42e-08 156_[+1(1.99e-06)]_226_\ [+3(8.66e-10)]_18_[+1(5.34e-05)]_47 8308 4.22e-04 235_[+1(4.68e-05)]_78_\ [+2(4.39e-07)]_155 8611 4.25e-03 214_[+1(4.65e-07)]_270 9009 3.77e-04 139_[+2(1.68e-05)]_222_\ [+1(2.68e-05)]_91_[+1(2.47e-06)] 9594 7.03e-04 298_[+2(4.39e-07)]_186 bd409 2.31e-03 283_[+1(4.09e-05)]_184_\ [+2(1.14e-05)]_1 bd623 3.65e-04 105_[+1(1.78e-06)]_102_\ [+2(9.77e-06)]_158_[+1(9.83e-05)]_87 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************