******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/350/350.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10321 1.0000 500 10919 1.0000 500 11426 1.0000 500 1372 1.0000 500 19126 1.0000 500 21004 1.0000 500 23285 1.0000 500 24381 1.0000 500 262593 1.0000 500 262635 1.0000 500 264541 1.0000 500 264596 1.0000 500 267973 1.0000 500 268454 1.0000 500 269254 1.0000 500 36640 1.0000 500 39936 1.0000 500 40767 1.0000 500 4175 1.0000 500 5172 1.0000 500 6930 1.0000 500 8254 1.0000 500 9006 1.0000 500 9307 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/350/350.seqs.fa -oc motifs/350 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 24 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 12000 N= 24 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.258 C 0.237 G 0.227 T 0.278 Background letter frequencies (from dataset with add-one prior applied): A 0.258 C 0.237 G 0.227 T 0.278 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 15 sites = 24 llr = 229 E-value = 1.6e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :352:27:535214a pos.-specific C 86:8581717:594: probability G :::::1::3:3:::: matrix T 2:5:4:231:23:2: bits 2.1 1.9 1.7 * 1.5 * * * Relative 1.3 * * * * Entropy 1.1 * * * * * * * (13.8 bits) 0.9 **** *** * * * 0.6 ******** * * * 0.4 ******** ****** 0.2 *************** 0.0 --------------- Multilevel CCTCCCACACACCAA consensus TAA T TGAGT C sequence TA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- 264596 458 7.85e-09 CGTAAAATTG CCACCCACGCACCCA ACGAAGCAAG 24381 110 3.60e-08 AGCCGAGTCC CCACCCACACTCCAA CACCGTCCAC 23285 11 7.17e-07 AAACACCTCG TCACCCACACAACAA GCTTGCACTC 262635 196 1.37e-06 CTCTTGTTTG CCTCCCTCTCGCCCA AACATGGACT 11426 456 1.57e-06 AGTTCACTCA CATCTCACAAATCAA TCTTGCAACC 21004 484 1.78e-06 ACTACACTCT TAACCCACAAACCCA AC 10919 424 2.51e-06 AAGTTAAGAA CCTCCCATGCTACCA CCTGTTCGCT 19126 95 2.80e-06 TCCCCCCCCA CCAACCACAATCCAA AAGCAAACGC 6930 390 3.14e-06 CCCGTCCCAT CCACTCCTACGCCAA ACATTCGCCA 268454 39 5.47e-06 GCAGTTGCTC CCTCTCACCCTCCTA CTGGTCCTCC 4175 166 6.70e-06 ATCAGATAGC CCACGCCCACGCCCA CGGCCCCTCG 36640 473 1.32e-05 GGGTTGGCAC CCTCTGACACACACA TATCACTGAC 10321 362 1.32e-05 CATCAATTCG CCTCTCTCCAGCCAA CAGCCGTGGA 9307 458 2.06e-05 ACACACCACA CATCTCATGCAGCAA CATCAATCAA 9006 254 2.44e-05 GTTACGTAAC CATCTCACAAAAACA CTAGGTAACA 264541 61 3.66e-05 AGTAGTCACT CCTCTCATGCTCGCA GATCGCTGCC 39936 18 4.27e-05 TGATTTTCCA CCACCGCCTCGTCCA CCGTGATAAT 262593 39 4.27e-05 AACTCGTCAT CCTCAAACACGTCTA CCAGTTTCAT 267973 272 4.61e-05 GCCGGCGGAG CAAACAACGAATCAA ACAATCCCCA 1372 434 5.75e-05 GACAACGAGC TAACCCTTGCAACAA CCATCTTAAC 40767 458 7.13e-05 ACGGAAGTAC CAAACAACAAATCTA CCTCGACGTC 269254 232 9.36e-05 ATGCACAACT TTTACCATACACCAA TCTGAAATAA 8254 427 1.55e-04 TCGAGCATCC CATCCAACGCGTCTT CACAGTCAAC 5172 362 2.87e-04 GCCTGCGAAC TCTCTCTGTCGACCA AGTGTCTGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 264596 7.8e-09 457_[+1]_28 24381 3.6e-08 109_[+1]_376 23285 7.2e-07 10_[+1]_475 262635 1.4e-06 195_[+1]_290 11426 1.6e-06 455_[+1]_30 21004 1.8e-06 483_[+1]_2 10919 2.5e-06 423_[+1]_62 19126 2.8e-06 94_[+1]_391 6930 3.1e-06 389_[+1]_96 268454 5.5e-06 38_[+1]_447 4175 6.7e-06 165_[+1]_320 36640 1.3e-05 472_[+1]_13 10321 1.3e-05 361_[+1]_124 9307 2.1e-05 457_[+1]_28 9006 2.4e-05 253_[+1]_232 264541 3.7e-05 60_[+1]_425 39936 4.3e-05 17_[+1]_468 262593 4.3e-05 38_[+1]_447 267973 4.6e-05 271_[+1]_214 1372 5.7e-05 433_[+1]_52 40767 7.1e-05 457_[+1]_28 269254 9.4e-05 231_[+1]_254 8254 0.00016 426_[+1]_59 5172 0.00029 361_[+1]_124 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=15 seqs=24 264596 ( 458) CCACCCACGCACCCA 1 24381 ( 110) CCACCCACACTCCAA 1 23285 ( 11) TCACCCACACAACAA 1 262635 ( 196) CCTCCCTCTCGCCCA 1 11426 ( 456) CATCTCACAAATCAA 1 21004 ( 484) TAACCCACAAACCCA 1 10919 ( 424) CCTCCCATGCTACCA 1 19126 ( 95) CCAACCACAATCCAA 1 6930 ( 390) CCACTCCTACGCCAA 1 268454 ( 39) CCTCTCACCCTCCTA 1 4175 ( 166) CCACGCCCACGCCCA 1 36640 ( 473) CCTCTGACACACACA 1 10321 ( 362) CCTCTCTCCAGCCAA 1 9307 ( 458) CATCTCATGCAGCAA 1 9006 ( 254) CATCTCACAAAAACA 1 264541 ( 61) CCTCTCATGCTCGCA 1 39936 ( 18) CCACCGCCTCGTCCA 1 262593 ( 39) CCTCAAACACGTCTA 1 267973 ( 272) CAAACAACGAATCAA 1 1372 ( 434) TAACCCTTGCAACAA 1 40767 ( 458) CAAACAACAAATCTA 1 269254 ( 232) TTTACCATACACCAA 1 8254 ( 427) CATCCAACGCGTCTT 1 5172 ( 362) TCTCTCTGTCGACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 11664 bayes= 9.37009 E= 1.6e-004 -1123 174 -1123 -41 37 140 -1123 -273 83 -1123 -1123 96 -63 181 -1123 -1123 -263 119 -244 43 -63 166 -144 -1123 145 -92 -1123 -74 -1123 158 -244 -15 95 -151 36 -115 17 158 -1123 -1123 83 -1123 56 -41 -31 107 -244 -15 -163 188 -244 -1123 69 81 -1123 -74 189 -1123 -1123 -273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 24 E= 1.6e-004 0.000000 0.791667 0.000000 0.208333 0.333333 0.625000 0.000000 0.041667 0.458333 0.000000 0.000000 0.541667 0.166667 0.833333 0.000000 0.000000 0.041667 0.541667 0.041667 0.375000 0.166667 0.750000 0.083333 0.000000 0.708333 0.125000 0.000000 0.166667 0.000000 0.708333 0.041667 0.250000 0.500000 0.083333 0.291667 0.125000 0.291667 0.708333 0.000000 0.000000 0.458333 0.000000 0.333333 0.208333 0.208333 0.500000 0.041667 0.250000 0.083333 0.875000 0.041667 0.000000 0.416667 0.416667 0.000000 0.166667 0.958333 0.000000 0.000000 0.041667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CT][CA][TA]C[CT]CA[CT][AG][CA][AGT][CTA]C[AC]A -------------------------------------------------------------------------------- Time 5.53 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 16 sites = 17 llr = 189 E-value = 1.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 232:129:5136:5:2 pos.-specific C :::::::11::1124: probability G 265:881946638166 matrix T 614a2::::21:12:2 bits 2.1 1.9 * 1.7 * * 1.5 * *** Relative 1.3 * *** * * Entropy 1.1 ***** * * (16.0 bits) 0.9 ******** * * 0.6 ** ********** ** 0.4 ************* ** 0.2 **************** 0.0 ---------------- Multilevel TGGTGGAGAGGAGAGG consensus AT GTAG CCT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 39936 280 8.40e-08 GACATGGTTG TGTTGGAGGGAGGTGG AGGTGGGTGT 10919 217 1.29e-07 TCCACCTTGT TGGTGGAGGGGATTGG CGTCGACTCT 4175 83 1.46e-07 ATGAACTTCA TGGTGGAGGTGGGAGA TCTCGAAGAG 9307 281 4.97e-07 GACAAAGCCT TATTGGAGAGAAGCGT GTTACCAGGG 21004 158 6.89e-07 TGTGGAGAGA TGTTGGAGAGGACAGT AGTAAAACCT 262635 412 1.29e-06 GGACGATGCC GAGTGGACAGGAGAGG ACGAGGTTGG 23285 81 2.29e-06 GCTTTCTGTT TGATGAAGAGTAGAGG AGAAACGTTC 262593 382 2.75e-06 CAGTATAGGC AGGTGAAGGAGAGACG ACTCGCGGCG 264541 362 3.59e-06 GGATTTGAAT TTGTGGAGAGGATCGT CTCGATGTTA 19126 17 3.91e-06 TTGGCTGTCG AGGTAGGGGGGAGAGG TGTCAGCCTC 9006 129 4.62e-06 TTTGTGTGTT TGGTTGGGGGGGGGGG AAAGAGGGGT 1372 157 5.90e-06 GGATTGTGAT GGATTGAGAGACGAGG TTGTGGCGGG 6930 147 6.92e-06 CCAATGCGAA GATTGGAGGGAGGCCT TTCTCAAAAA 8254 36 8.71e-06 GGCATCGTAC TGTTGAAGCTGAGCCG AAAGACGAAA 36640 297 9.38e-06 ACACTTATTA TAATTGAGATGGGTCG ATCAACTCGA 11426 138 1.34e-05 GGAAGCAAGA AATTGGAGATGCGACA CCACAAGACA 40767 166 1.54e-05 AGAAATAGTA TTGTGGAGAAAAGTCA AACAAATATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 39936 8.4e-08 279_[+2]_205 10919 1.3e-07 216_[+2]_268 4175 1.5e-07 82_[+2]_402 9307 5e-07 280_[+2]_204 21004 6.9e-07 157_[+2]_327 262635 1.3e-06 411_[+2]_73 23285 2.3e-06 80_[+2]_404 262593 2.7e-06 381_[+2]_103 264541 3.6e-06 361_[+2]_123 19126 3.9e-06 16_[+2]_468 9006 4.6e-06 128_[+2]_356 1372 5.9e-06 156_[+2]_328 6930 6.9e-06 146_[+2]_338 8254 8.7e-06 35_[+2]_449 36640 9.4e-06 296_[+2]_188 11426 1.3e-05 137_[+2]_347 40767 1.5e-05 165_[+2]_319 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=16 seqs=17 39936 ( 280) TGTTGGAGGGAGGTGG 1 10919 ( 217) TGGTGGAGGGGATTGG 1 4175 ( 83) TGGTGGAGGTGGGAGA 1 9307 ( 281) TATTGGAGAGAAGCGT 1 21004 ( 158) TGTTGGAGAGGACAGT 1 262635 ( 412) GAGTGGACAGGAGAGG 1 23285 ( 81) TGATGAAGAGTAGAGG 1 262593 ( 382) AGGTGAAGGAGAGACG 1 264541 ( 362) TTGTGGAGAGGATCGT 1 19126 ( 17) AGGTAGGGGGGAGAGG 1 9006 ( 129) TGGTTGGGGGGGGGGG 1 1372 ( 157) GGATTGAGAGACGAGG 1 6930 ( 147) GATTGGAGGGAGGCCT 1 8254 ( 36) TGTTGAAGCTGAGCCG 1 36640 ( 297) TAATTGAGATGGGTCG 1 11426 ( 138) AATTGGAGATGCGACA 1 40767 ( 166) TTGTGGAGAAAAGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 11640 bayes= 10.2128 E= 1.3e-001 -55 -1073 -36 122 19 -1073 138 -124 -55 -1073 105 35 -1073 -1073 -1073 185 -213 -1073 175 -65 -55 -1073 186 -1073 177 -1073 -95 -1073 -1073 -201 205 -1073 103 -201 86 -1073 -113 -1073 151 -24 19 -1073 151 -224 119 -101 38 -1073 -1073 -201 186 -124 86 -1 -194 -24 -1073 57 151 -1073 -55 -1073 138 -24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 17 E= 1.3e-001 0.176471 0.000000 0.176471 0.647059 0.294118 0.000000 0.588235 0.117647 0.176471 0.000000 0.470588 0.352941 0.000000 0.000000 0.000000 1.000000 0.058824 0.000000 0.764706 0.176471 0.176471 0.000000 0.823529 0.000000 0.882353 0.000000 0.117647 0.000000 0.000000 0.058824 0.941176 0.000000 0.529412 0.058824 0.411765 0.000000 0.117647 0.000000 0.647059 0.235294 0.294118 0.000000 0.647059 0.058824 0.588235 0.117647 0.294118 0.000000 0.000000 0.058824 0.823529 0.117647 0.470588 0.235294 0.058824 0.235294 0.000000 0.352941 0.647059 0.000000 0.176471 0.000000 0.588235 0.235294 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- T[GA][GT]TGGAG[AG][GT][GA][AG]G[ACT][GC][GT] -------------------------------------------------------------------------------- Time 11.00 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 15 sites = 17 llr = 182 E-value = 7.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 5:588:2:3412:4: pos.-specific C 2a51:91875:2952 probability G 4::111::::1:1:4 matrix T ::::2172:295:14 bits 2.1 * 1.9 * 1.7 * * 1.5 * * * Relative 1.3 * * * * * Entropy 1.1 ***** ** * * (15.4 bits) 0.9 ******** * * 0.6 ********* * ** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel ACCAACTCCCTTCCT consensus G A ATAA A AG sequence C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- 11426 478 5.15e-08 CAATCTTGCA ACCAACTCACTTCCT CCTACACC 262593 152 1.30e-07 AGACTTGATA GCAAACTCCTTTCCG GTAGATCGTT 262635 173 4.28e-07 TTCTGCTCAG ACAAACTTCCTCCCT CTTGTTTGCC 36640 373 1.72e-06 GCCGCCACAA ACCAACTCCTTTCTC GGCCACAACA 9006 339 2.10e-06 CAAATTTGCT ACCAACTTACTACCC ATCGCTTTCA 40767 400 3.43e-06 TGCTAACCTT CCCCACTCACTTCCT GCCACCACCC 267973 338 3.43e-06 GCAGCAGCAC CCCAACCCCCTTCAT TCAGTTTGGA 5172 403 4.13e-06 GACATTTACA ACCAACTCAATTGCG AAAGGATCAG 9307 413 4.94e-06 AAACAGTCAA GCCAACTCCAGCCAG GCATGACAGC 264541 298 5.86e-06 TCAACATTCT CCAATCTCCTTTCAT TTTCATTGGT 19126 339 6.35e-06 CAGTCCTAGA ACAAAGTCCCTACAC CCTCAACATG 6930 462 7.50e-06 CAGCACCTGC ACCAACACCAACCCG ACCTTGCTGC 8254 4 8.16e-06 TTC GCAGACTCAATTCAG ATACATCGGC 10321 79 1.29e-05 CGTACTATTA GCAATCTTCATTCTG TGTACACGTA 23285 30 1.49e-05 CAACAAGCTT GCACTCACCCTACCT TCAGCCGGCT 269254 57 1.98e-05 ATTCCTGATC GCCAATACCATACAT TGTGAGATAT 10919 167 2.12e-05 CATTGTCAAC ACAAGCATCCTCCCC CGGTTCGGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 11426 5.2e-08 477_[+3]_8 262593 1.3e-07 151_[+3]_334 262635 4.3e-07 172_[+3]_313 36640 1.7e-06 372_[+3]_113 9006 2.1e-06 338_[+3]_147 40767 3.4e-06 399_[+3]_86 267973 3.4e-06 337_[+3]_148 5172 4.1e-06 402_[+3]_83 9307 4.9e-06 412_[+3]_73 264541 5.9e-06 297_[+3]_188 19126 6.3e-06 338_[+3]_147 6930 7.5e-06 461_[+3]_24 8254 8.2e-06 3_[+3]_482 10321 1.3e-05 78_[+3]_407 23285 1.5e-05 29_[+3]_456 269254 2e-05 56_[+3]_429 10919 2.1e-05 166_[+3]_319 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=15 seqs=17 11426 ( 478) ACCAACTCACTTCCT 1 262593 ( 152) GCAAACTCCTTTCCG 1 262635 ( 173) ACAAACTTCCTCCCT 1 36640 ( 373) ACCAACTCCTTTCTC 1 9006 ( 339) ACCAACTTACTACCC 1 40767 ( 400) CCCCACTCACTTCCT 1 267973 ( 338) CCCAACCCCCTTCAT 1 5172 ( 403) ACCAACTCAATTGCG 1 9307 ( 413) GCCAACTCCAGCCAG 1 264541 ( 298) CCAATCTCCTTTCAT 1 19126 ( 339) ACAAAGTCCCTACAC 1 6930 ( 462) ACCAACACCAACCCG 1 8254 ( 4) GCAGACTCAATTCAG 1 10321 ( 79) GCAATCTTCATTCTG 1 23285 ( 30) GCACTCACCCTACCT 1 269254 ( 57) GCCAATACCATACAT 1 10919 ( 167) ACAAGCATCCTCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 11664 bayes= 9.48985 E= 7.1e+000 86 -43 64 -1073 -1073 207 -1073 -1073 86 116 -1073 -1073 167 -101 -194 -1073 156 -1073 -194 -65 -1073 189 -194 -224 -14 -201 -1073 135 -1073 169 -1073 -24 19 157 -1073 -1073 45 99 -1073 -65 -213 -1073 -194 167 -14 -1 -1073 93 -1073 199 -194 -1073 45 116 -1073 -124 -1073 -1 64 57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 17 E= 7.1e+000 0.470588 0.176471 0.352941 0.000000 0.000000 1.000000 0.000000 0.000000 0.470588 0.529412 0.000000 0.000000 0.823529 0.117647 0.058824 0.000000 0.764706 0.000000 0.058824 0.176471 0.000000 0.882353 0.058824 0.058824 0.235294 0.058824 0.000000 0.705882 0.000000 0.764706 0.000000 0.235294 0.294118 0.705882 0.000000 0.000000 0.352941 0.470588 0.000000 0.176471 0.058824 0.000000 0.058824 0.882353 0.235294 0.235294 0.000000 0.529412 0.000000 0.941176 0.058824 0.000000 0.352941 0.529412 0.000000 0.117647 0.000000 0.235294 0.352941 0.411765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [AG]C[CA]AAC[TA][CT][CA][CA]T[TAC]C[CA][TGC] -------------------------------------------------------------------------------- Time 15.57 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10321 7.47e-04 78_[+3(1.29e-05)]_268_\ [+1(1.32e-05)]_124 10919 1.88e-07 166_[+3(2.12e-05)]_35_\ [+2(1.29e-07)]_191_[+1(2.51e-06)]_62 11426 3.52e-08 [+1(5.35e-05)]_122_[+2(1.34e-05)]_\ 302_[+1(1.57e-06)]_7_[+3(5.15e-08)]_8 1372 2.75e-03 156_[+2(5.90e-06)]_261_\ [+1(5.75e-05)]_52 19126 1.54e-06 16_[+2(3.91e-06)]_62_[+1(2.80e-06)]_\ 229_[+3(6.35e-06)]_147 21004 1.78e-05 157_[+2(6.89e-07)]_310_\ [+1(1.78e-06)]_2 23285 6.02e-07 10_[+1(7.17e-07)]_4_[+3(1.49e-05)]_\ 36_[+2(2.29e-06)]_404 24381 4.84e-04 109_[+1(3.60e-08)]_376 262593 3.88e-07 38_[+1(4.27e-05)]_98_[+3(1.30e-07)]_\ 215_[+2(2.75e-06)]_103 262635 2.54e-08 172_[+3(4.28e-07)]_8_[+1(1.37e-06)]_\ 201_[+2(1.29e-06)]_73 264541 1.30e-05 60_[+1(3.66e-05)]_222_\ [+3(5.86e-06)]_49_[+2(3.59e-06)]_123 264596 3.20e-05 457_[+1(7.85e-09)]_28 267973 2.29e-03 271_[+1(4.61e-05)]_51_\ [+3(3.43e-06)]_148 268454 3.16e-02 38_[+1(5.47e-06)]_447 269254 8.29e-03 56_[+3(1.98e-05)]_160_\ [+1(9.36e-05)]_254 36640 4.18e-06 296_[+2(9.38e-06)]_60_\ [+3(1.72e-06)]_85_[+1(1.32e-05)]_13 39936 2.90e-05 17_[+1(4.27e-05)]_247_\ [+2(8.40e-08)]_205 40767 5.23e-05 165_[+2(1.54e-05)]_218_\ [+3(3.43e-06)]_43_[+1(7.13e-05)]_28 4175 2.03e-05 82_[+2(1.46e-07)]_67_[+1(6.70e-06)]_\ 320 5172 4.41e-03 402_[+3(4.13e-06)]_83 6930 3.30e-06 146_[+2(6.92e-06)]_227_\ [+1(3.14e-06)]_57_[+3(7.50e-06)]_24 8254 1.30e-04 3_[+3(8.16e-06)]_17_[+2(8.71e-06)]_\ 449 9006 4.58e-06 128_[+2(4.62e-06)]_109_\ [+1(2.44e-05)]_70_[+3(2.10e-06)]_147 9307 1.15e-06 280_[+2(4.97e-07)]_116_\ [+3(4.94e-06)]_30_[+1(2.06e-05)]_28 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************