******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/373/373.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10550 1.0000 500 11592 1.0000 500 1743 1.0000 500 21201 1.0000 500 21274 1.0000 500 21589 1.0000 500 21850 1.0000 500 22506 1.0000 500 2335 1.0000 500 23856 1.0000 500 24111 1.0000 500 261255 1.0000 500 262514 1.0000 500 268488 1.0000 500 269123 1.0000 500 27922 1.0000 500 29013 1.0000 500 29936 1.0000 500 32840 1.0000 500 5400 1.0000 500 5916 1.0000 500 9091 1.0000 500 9108 1.0000 500 9711 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/373/373.seqs.fa -oc motifs/373 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 24 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 12000 N= 24 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.274 C 0.242 G 0.227 T 0.257 Background letter frequencies (from dataset with add-one prior applied): A 0.274 C 0.242 G 0.227 T 0.256 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 12 sites = 23 llr = 208 E-value = 1.7e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :21::3::31:: pos.-specific C 3::::2:1111: probability G 75:2a1:72:17 matrix T :398:4a24873 bits 2.1 * 1.9 * * 1.7 * * 1.5 * * * Relative 1.3 * *** * * Entropy 1.1 * *** ** * * (13.1 bits) 0.9 * *** ** *** 0.6 ***** ** *** 0.4 ***** ** *** 0.2 ************ 0.0 ------------ Multilevel GGTTGTTGTTTG consensus CT G A A T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 21201 139 3.61e-07 CGACGTCTAT CGTTGTTGTTTG AAAGCCACTC 269123 16 1.02e-06 GCGCTTCCAT GGTTGTTGATTT ATGGTGTGAA 23856 158 3.99e-06 TGCAAACGTA GTTTGTTGCTTG GTGCTTCGAT 21850 293 3.99e-06 TCTAAAGACA GGTTGTTGTATG AAGGAACAGT 27922 108 5.33e-06 ATGTGTATTT CATTGATGTTTG CGTGGAGGTG 5916 79 6.64e-06 TTGAGATTGT GATTGTTGTTGG AAGTTGCTGT 29013 139 7.81e-06 GTGGTGGTAC CGTTGTTTATTG CCGTTTGTCA 268488 473 7.81e-06 ATTACCAACC GTTGGATGATTG GAGAGGGGAG 10550 426 8.72e-06 GCTGTGTATT CGTTGATGCTTG ATGCACCATG 21589 81 1.39e-05 CCTCTCCGAT GGTTGGTGTCTG CGCCTCTGCC 9091 189 1.67e-05 AGTTGTTGGT GGAGGTTGATTG GGTGTACATT 29936 446 1.88e-05 GAAGAGAGGG GATTGATGATCG TGAATTTGGT 32840 169 2.77e-05 ACTACCTGTT GTTTGTTTATTT GAATAAAAAT 5400 231 3.09e-05 CGGGGTCTGC GGTTGGTGGCTG GGGTTGTGTT 11592 184 3.38e-05 ATTCGCTGAG GATTGTTGTCTT TCATCACTGT 22506 324 4.03e-05 CTCTCAAATC GTTTGATCGTTG TGTGACGAGA 9108 378 4.40e-05 ATCGTTGGTA GGATGATGGTTT GAAAAGGCAC 1743 350 5.22e-05 GCGGTTGCGT CATTGCTGTTGG AAACAACTGG 261255 91 7.18e-05 CGTGTTTGTG GGTGGCTTTTTT CGAAAGCAAC 2335 144 9.02e-05 CGGTGAGGCG GGAGGATTTTTG GGCGGGATTT 262514 368 9.68e-05 GTCGGCCATC GTTGGCTGGTGG CCGGTCAACT 24111 343 2.06e-04 TCTTAACATG CGTTGTTGAACT TGTACGACAA 9711 129 2.66e-04 CTCTCGCAGA CTTTGCTCATCG GGAATCTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 21201 3.6e-07 138_[+1]_350 269123 1e-06 15_[+1]_473 23856 4e-06 157_[+1]_331 21850 4e-06 292_[+1]_196 27922 5.3e-06 107_[+1]_381 5916 6.6e-06 78_[+1]_410 29013 7.8e-06 138_[+1]_350 268488 7.8e-06 472_[+1]_16 10550 8.7e-06 425_[+1]_63 21589 1.4e-05 80_[+1]_408 9091 1.7e-05 188_[+1]_300 29936 1.9e-05 445_[+1]_43 32840 2.8e-05 168_[+1]_320 5400 3.1e-05 230_[+1]_258 11592 3.4e-05 183_[+1]_305 22506 4e-05 323_[+1]_165 9108 4.4e-05 377_[+1]_111 1743 5.2e-05 349_[+1]_139 261255 7.2e-05 90_[+1]_398 2335 9e-05 143_[+1]_345 262514 9.7e-05 367_[+1]_121 24111 0.00021 342_[+1]_146 9711 0.00027 128_[+1]_360 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=12 seqs=23 21201 ( 139) CGTTGTTGTTTG 1 269123 ( 16) GGTTGTTGATTT 1 23856 ( 158) GTTTGTTGCTTG 1 21850 ( 293) GGTTGTTGTATG 1 27922 ( 108) CATTGATGTTTG 1 5916 ( 79) GATTGTTGTTGG 1 29013 ( 139) CGTTGTTTATTG 1 268488 ( 473) GTTGGATGATTG 1 10550 ( 426) CGTTGATGCTTG 1 21589 ( 81) GGTTGGTGTCTG 1 9091 ( 189) GGAGGTTGATTG 1 29936 ( 446) GATTGATGATCG 1 32840 ( 169) GTTTGTTTATTT 1 5400 ( 231) GGTTGGTGGCTG 1 11592 ( 184) GATTGTTGTCTT 1 22506 ( 324) GTTTGATCGTTG 1 9108 ( 378) GGATGATGGTTT 1 1743 ( 350) CATTGCTGTTGG 1 261255 ( 91) GGTGGCTTTTTT 1 2335 ( 144) GGAGGATTTTTG 1 262514 ( 368) GTTGGCTGGTGG 1 24111 ( 343) CGTTGTTGAACT 1 9711 ( 129) CTTTGCTCATCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 11736 bayes= 9.3955 E= 1.7e-004 -1117 33 162 -1117 -33 -1117 120 2 -107 -1117 -1117 176 -1117 -1117 -6 161 -1117 -1117 214 -1117 15 -48 -138 76 -1117 -1117 -1117 196 -1117 -148 170 -56 34 -148 -38 61 -166 -89 -1117 161 -1117 -89 -80 153 -1117 -1117 170 2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 23 E= 1.7e-004 0.000000 0.304348 0.695652 0.000000 0.217391 0.000000 0.521739 0.260870 0.130435 0.000000 0.000000 0.869565 0.000000 0.000000 0.217391 0.782609 0.000000 0.000000 1.000000 0.000000 0.304348 0.173913 0.086957 0.434783 0.000000 0.000000 0.000000 1.000000 0.000000 0.086957 0.739130 0.173913 0.347826 0.086957 0.173913 0.391304 0.086957 0.130435 0.000000 0.782609 0.000000 0.130435 0.130435 0.739130 0.000000 0.000000 0.739130 0.260870 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [GC][GTA]T[TG]G[TA]TG[TA]TT[GT] -------------------------------------------------------------------------------- Time 5.71 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 16 sites = 24 llr = 234 E-value = 1.0e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 2a8:6:385:66:753 pos.-specific C 7:18:561272:92:4 probability G 1:2::1:1:3:1:25: matrix T :::144::3:231::3 bits 2.1 1.9 1.7 * * 1.5 * * Relative 1.3 * * * * Entropy 1.1 * * * * * * (14.0 bits) 0.9 *** ** * * * 0.6 ******** * *** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel CAACACCAACAACAAC consensus TTA TGCT GT sequence C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 29013 348 2.68e-08 TGCGCTCACG CAACACCAACAACGGC AACACGAAGA 5916 208 3.65e-07 TCTGCAGATT CAACACCATCCTCAGT ACCAACTACA 262514 90 4.29e-07 GAAGAATAGA CAACATCATCCTCAGC CTCATCAAAT 22506 468 9.55e-07 GCCTTCTCCT CACCATCACCAACAAC TACTTACAGA 21201 478 1.23e-06 AACACCCACA CAGCACAATCAACAAA TAAAATT 11592 447 1.76e-06 CCTTGAACAG CAGCACCACCAACCAT TTCGCAGCGC 10550 281 1.76e-06 ACCGTCTATT CAACTTGAACAACAAT CATCAAACAC 269123 372 2.23e-06 TGGAAGACGA CAATACCAACAGCAAC GAAGAAGTCG 24111 419 3.48e-06 CATTCCAACA CAACTGAAACATCAAA ACGTCGAGTT 23856 434 7.85e-06 CACCACCAAA CAACACACAGCACAAT TCGCCCAGTA 5400 25 8.64e-06 CTCCACGCGA CAACTCCACCACCCGC ACAAACTCGT 27922 222 1.14e-05 TGTTAAACTT CAATTTAAACAACGAA CGACTTGAAG 21850 28 1.14e-05 TTTCTGAGAT CAACTTCAACTTTAGT CTTCGCACTG 1743 436 1.25e-05 CAGTCCTCTA AAACATCAAGTACGGT AATCGAAAAT 21589 406 1.78e-05 TCTCGCCTGT CAATACAGAGAACAGC GACGTCAACG 9108 434 2.10e-05 AGTGATCCCC CAGCTCCAAGCTCCAA AGCACCGGCG 29936 80 2.91e-05 TACCCGGTCC AAACATCCTCAACGAT CCAGCAATGG 9711 481 3.14e-05 CAACACAGCC TAAATCCAACAACAGC CAAT 9091 245 3.40e-05 AGGCTTAAAT AAACTTAACGTTCAGC GTAATTTAAA 268488 345 3.40e-05 CATCCAAATC CACCTTAACCCTCAAA CCCCACCCCG 261255 153 8.02e-05 GGTTCTTAAT GGACACAAAGTACAAT AATTGTCCCC 21274 23 8.02e-05 CCCACAAGAT GAACACCATGAATCGA TTCAGCGGTG 32840 287 9.15e-05 AGCCAAAGTA AAGCGCCAACGACAAC GACAAACCGA 2335 380 1.25e-04 AACTGGCTTC GAACAGCGTCAGCAGC GGAGCAATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 29013 2.7e-08 347_[+2]_137 5916 3.6e-07 207_[+2]_277 262514 4.3e-07 89_[+2]_395 22506 9.6e-07 467_[+2]_17 21201 1.2e-06 477_[+2]_7 11592 1.8e-06 446_[+2]_38 10550 1.8e-06 280_[+2]_204 269123 2.2e-06 371_[+2]_113 24111 3.5e-06 418_[+2]_66 23856 7.9e-06 433_[+2]_51 5400 8.6e-06 24_[+2]_460 27922 1.1e-05 221_[+2]_263 21850 1.1e-05 27_[+2]_457 1743 1.3e-05 435_[+2]_49 21589 1.8e-05 405_[+2]_79 9108 2.1e-05 433_[+2]_51 29936 2.9e-05 79_[+2]_405 9711 3.1e-05 480_[+2]_4 9091 3.4e-05 244_[+2]_240 268488 3.4e-05 344_[+2]_140 261255 8e-05 152_[+2]_332 21274 8e-05 22_[+2]_462 32840 9.2e-05 286_[+2]_198 2335 0.00013 379_[+2]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=16 seqs=24 29013 ( 348) CAACACCAACAACGGC 1 5916 ( 208) CAACACCATCCTCAGT 1 262514 ( 90) CAACATCATCCTCAGC 1 22506 ( 468) CACCATCACCAACAAC 1 21201 ( 478) CAGCACAATCAACAAA 1 11592 ( 447) CAGCACCACCAACCAT 1 10550 ( 281) CAACTTGAACAACAAT 1 269123 ( 372) CAATACCAACAGCAAC 1 24111 ( 419) CAACTGAAACATCAAA 1 23856 ( 434) CAACACACAGCACAAT 1 5400 ( 25) CAACTCCACCACCCGC 1 27922 ( 222) CAATTTAAACAACGAA 1 21850 ( 28) CAACTTCAACTTTAGT 1 1743 ( 436) AAACATCAAGTACGGT 1 21589 ( 406) CAATACAGAGAACAGC 1 9108 ( 434) CAGCTCCAAGCTCCAA 1 29936 ( 80) AAACATCCTCAACGAT 1 9711 ( 481) TAAATCCAACAACAGC 1 9091 ( 245) AAACTTAACGTTCAGC 1 268488 ( 345) CACCTTAACCCTCAAA 1 261255 ( 153) GGACACAAAGTACAAT 1 21274 ( 23) GAACACCATGAATCGA 1 32840 ( 287) AAGCGCCAACGACAAC 1 2335 ( 380) GAACAGCGTCAGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 11640 bayes= 8.91886 E= 1.0e-003 -72 146 -86 -262 181 -1123 -244 -1123 145 -154 -45 -1123 -271 178 -1123 -104 109 -1123 -244 55 -1123 116 -144 55 28 137 -244 -1123 160 -154 -144 -1123 98 -22 -1123 -4 -1123 155 36 -1123 109 -22 -244 -62 109 -254 -144 19 -1123 192 -1123 -162 128 -54 -45 -1123 98 -1123 101 -1123 -13 78 -1123 38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 24 E= 10.0e-004 0.166667 0.666667 0.125000 0.041667 0.958333 0.000000 0.041667 0.000000 0.750000 0.083333 0.166667 0.000000 0.041667 0.833333 0.000000 0.125000 0.583333 0.000000 0.041667 0.375000 0.000000 0.541667 0.083333 0.375000 0.333333 0.625000 0.041667 0.000000 0.833333 0.083333 0.083333 0.000000 0.541667 0.208333 0.000000 0.250000 0.000000 0.708333 0.291667 0.000000 0.583333 0.208333 0.041667 0.166667 0.583333 0.041667 0.083333 0.291667 0.000000 0.916667 0.000000 0.083333 0.666667 0.166667 0.166667 0.000000 0.541667 0.000000 0.458333 0.000000 0.250000 0.416667 0.000000 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- CAAC[AT][CT][CA]A[ATC][CG][AC][AT]CA[AG][CTA] -------------------------------------------------------------------------------- Time 11.12 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 15 sites = 14 llr = 164 E-value = 6.6e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 372:a115::7:1a: pos.-specific C 313::7::84:63:a probability G 412a::9:24:16:: matrix T ::3::2:5:233::: bits 2.1 * * 1.9 ** ** 1.7 ** ** 1.5 ** * ** Relative 1.3 ** * * ** Entropy 1.1 ** * * * ** (16.9 bits) 0.9 * ****** ** ** 0.6 * ************ 0.4 ** ************ 0.2 ** ************ 0.0 --------------- Multilevel GACGACGACGACGAC consensus A T T TGCTTC sequence C A T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- 261255 378 3.37e-08 CCATCATCTC GACGACGACTACGAC GACGGTGCAT 269123 418 1.68e-07 TCAATTCTAC CAGGACGACGATGAC AACGATGACG 29013 277 4.53e-07 AATGGAGAGC CACGACGTCCACAAC CGCAGTAGGA 268488 370 5.87e-07 ACCCCACCCC GATGAAGTCGACGAC ACACGTTGGG 21589 57 8.33e-07 ATTGGAAGGA GGAGACGTCGTCGAC CTCTCCGATG 22506 3 1.16e-06 CG ACCGACGACGACCAC TCATTGTCAT 29936 189 1.30e-06 GCTAAGCGAC GATGATGACTATGAC GAAGACTACC 9711 429 1.92e-06 CCTCCCGTAG GAGGACGTCCAGCAC AAAACCACCA 262514 304 1.92e-06 CAGCGGATAG AAGGACGTCGTTCAC CTCCACTCCC 21201 118 1.92e-06 ATATGATGAG GATGATGTGTACGAC GTCTATCGTT 1743 459 4.46e-06 GGTAATCGAA AATGATGTGCACCAC TTCCTCTTCC 10550 220 4.46e-06 GTTCAATAAC CGAGACAACGACGAC AAACTGTGGA 5400 121 7.24e-06 CCGTCCGTGT CAAGACAACCTTGAC ATCGGCCTTG 24111 388 1.60e-05 TCGTCTGTCG ACCGACGAGCTCAAC GGCTCTCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 261255 3.4e-08 377_[+3]_108 269123 1.7e-07 417_[+3]_68 29013 4.5e-07 276_[+3]_209 268488 5.9e-07 369_[+3]_116 21589 8.3e-07 56_[+3]_429 22506 1.2e-06 2_[+3]_483 29936 1.3e-06 188_[+3]_297 9711 1.9e-06 428_[+3]_57 262514 1.9e-06 303_[+3]_182 21201 1.9e-06 117_[+3]_368 1743 4.5e-06 458_[+3]_27 10550 4.5e-06 219_[+3]_266 5400 7.2e-06 120_[+3]_365 24111 1.6e-05 387_[+3]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=15 seqs=14 261255 ( 378) GACGACGACTACGAC 1 269123 ( 418) CAGGACGACGATGAC 1 29013 ( 277) CACGACGTCCACAAC 1 268488 ( 370) GATGAAGTCGACGAC 1 21589 ( 57) GGAGACGTCGTCGAC 1 22506 ( 3) ACCGACGACGACCAC 1 29936 ( 189) GATGATGACTATGAC 1 9711 ( 429) GAGGACGTCCAGCAC 1 262514 ( 304) AAGGACGTCGTTCAC 1 21201 ( 118) GATGATGTGTACGAC 1 1743 ( 459) AATGATGTGCACCAC 1 10550 ( 220) CGAGACAACGACGAC 1 5400 ( 121) CAAGACAACCTTGAC 1 24111 ( 388) ACCGACGAGCTCAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 11664 bayes= 10.307 E= 6.6e-002 6 24 92 -1045 138 -76 -67 -1045 -36 24 -8 16 -1045 -1045 214 -1045 187 -1045 -1045 -1045 -194 156 -1045 -26 -94 -1045 192 -1045 87 -1045 -1045 96 -1045 170 -8 -1045 -1045 56 92 -26 138 -1045 -1045 16 -1045 141 -167 16 -94 24 133 -1045 187 -1045 -1045 -1045 -1045 204 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 14 E= 6.6e-002 0.285714 0.285714 0.428571 0.000000 0.714286 0.142857 0.142857 0.000000 0.214286 0.285714 0.214286 0.285714 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.071429 0.714286 0.000000 0.214286 0.142857 0.000000 0.857143 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.785714 0.214286 0.000000 0.000000 0.357143 0.428571 0.214286 0.714286 0.000000 0.000000 0.285714 0.000000 0.642857 0.071429 0.285714 0.142857 0.285714 0.571429 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [GAC]A[CTAG]GA[CT]G[AT][CG][GCT][AT][CT][GC]AC -------------------------------------------------------------------------------- Time 16.39 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10550 1.52e-06 219_[+3(4.46e-06)]_46_\ [+2(1.76e-06)]_129_[+1(8.72e-06)]_63 11592 3.55e-04 183_[+1(3.38e-05)]_251_\ [+2(1.76e-06)]_38 1743 4.20e-05 349_[+1(5.22e-05)]_74_\ [+2(1.25e-05)]_7_[+3(4.46e-06)]_27 21201 2.84e-08 117_[+3(1.92e-06)]_6_[+1(3.61e-07)]_\ 327_[+2(1.23e-06)]_7 21274 2.17e-01 22_[+2(8.02e-05)]_462 21589 4.07e-06 56_[+3(8.33e-07)]_9_[+1(1.39e-05)]_\ 313_[+2(1.78e-05)]_79 21850 6.20e-04 27_[+2(1.14e-05)]_249_\ [+1(3.99e-06)]_196 22506 1.04e-06 2_[+3(1.16e-06)]_306_[+1(4.03e-05)]_\ 132_[+2(9.55e-07)]_17 2335 1.64e-02 143_[+1(9.02e-05)]_345 23856 3.48e-04 157_[+1(3.99e-06)]_264_\ [+2(7.85e-06)]_18_[+2(8.57e-05)]_17 24111 1.34e-04 387_[+3(1.60e-05)]_16_\ [+2(3.48e-06)]_38_[+2(2.10e-05)]_12 261255 3.77e-06 90_[+1(7.18e-05)]_50_[+2(8.02e-05)]_\ 62_[+3(8.78e-05)]_132_[+3(3.37e-08)]_108 262514 1.72e-06 89_[+2(4.29e-07)]_198_\ [+3(1.92e-06)]_49_[+1(9.68e-05)]_121 268488 3.17e-06 344_[+2(3.40e-05)]_9_[+3(5.87e-07)]_\ 88_[+1(7.81e-06)]_16 269123 1.36e-08 15_[+1(1.02e-06)]_344_\ [+2(2.23e-06)]_30_[+3(1.68e-07)]_68 27922 7.91e-04 107_[+1(5.33e-06)]_102_\ [+2(1.14e-05)]_263 29013 3.77e-09 138_[+1(7.81e-06)]_126_\ [+3(4.53e-07)]_56_[+2(2.68e-08)]_54_[+2(8.57e-05)]_67 29936 1.22e-05 79_[+2(2.91e-05)]_93_[+3(1.30e-06)]_\ 242_[+1(1.88e-05)]_43 32840 2.51e-03 168_[+1(2.77e-05)]_106_\ [+2(9.15e-05)]_198 5400 2.95e-05 24_[+2(8.64e-06)]_80_[+3(7.24e-06)]_\ 95_[+1(3.09e-05)]_258 5916 5.13e-05 78_[+1(6.64e-06)]_117_\ [+2(3.65e-07)]_277 9091 5.98e-03 188_[+1(1.67e-05)]_44_\ [+2(3.40e-05)]_240 9108 5.35e-03 377_[+1(4.40e-05)]_44_\ [+2(2.10e-05)]_51 9711 1.77e-04 428_[+3(1.92e-06)]_37_\ [+2(3.14e-05)]_4 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************