******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/402/402.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 11887 1.0000 500 17956 1.0000 500 2064 1.0000 500 21147 1.0000 500 22433 1.0000 500 23484 1.0000 500 24281 1.0000 500 261808 1.0000 500 2634 1.0000 500 264366 1.0000 500 270023 1.0000 500 3409 1.0000 500 37813 1.0000 500 38933 1.0000 500 3935 1.0000 500 5582 1.0000 500 5653 1.0000 500 7367 1.0000 500 7669 1.0000 500 8370 1.0000 500 960 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/402/402.seqs.fa -oc motifs/402 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 21 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 10500 N= 21 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.270 C 0.236 G 0.230 T 0.264 Background letter frequencies (from dataset with add-one prior applied): A 0.270 C 0.236 G 0.230 T 0.264 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 16 sites = 19 llr = 197 E-value = 2.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A ::22:21::3:42:81 pos.-specific C 25:2:231:2:12:12 probability G 45:1773931a54a:7 matrix T 4:863:3174::3:21 bits 2.1 * * 1.9 * * 1.7 * * 1.5 * * * Relative 1.3 * * * * * Entropy 1.1 ** * ** * ** (15.0 bits) 0.8 ** ** ** * ** 0.6 *** ** ** ** *** 0.4 ****** ** ** *** 0.2 **************** 0.0 ---------------- Multilevel GCTTGGGGTTGGGGAG consensus TGACT T GA AT sequence C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 261808 269 1.07e-08 TTTGTCTCTT TGTTGGTGTCGGGGAG CCGAACAACG 37813 201 1.19e-07 ATCGGGGATG GCTTTGGGTAGAGGAG GGACGGGGAA 5582 46 2.59e-07 CTTGGATGGA GGTTTGGGTCGGTGAG TCTTTTGTGT 11887 187 6.08e-07 TCCGTAGTTT GCTCGGCGTTGAGGTG AAGTGTTGTT 960 178 1.01e-06 ATGTTTAGTA GGTTGATGTTGGGGAC AAATAACACG 7669 87 3.85e-06 ACCAACAACA TCATGCTGTTGAAGAG TCCAAGTGCA 24281 180 4.26e-06 CTAGCTCGCC TCTCGGCGTGGGTGAC ATTAAGTATA 2064 392 4.26e-06 GCCCGACAGT GCTTGACGTCGCTGAG CAGACGGGAA 8370 261 4.69e-06 GTCGAGTCTA CCATGGTGTTGGTGTG AGCTGACGGC 3409 118 6.83e-06 TTCTTTGACT CGTTGGAGTTGCAGAG GTCTACTTTC 2634 378 6.83e-06 CAAATGTTTT TGTCGGAGTAGGGGAA GTCCTCAAGC 38933 85 9.73e-06 GCGAAACAGC TGTTGACGTTGACGAA ACTACCGATG 23484 409 9.73e-06 GAGGTAGACA GCAGGGGGGAGAGGAG AGGGCCGTCC 7367 320 1.25e-05 GTGGTCACTT TGTAGGTGGAGGGGCG AGAGAAGTGT 21147 132 2.16e-05 AAACGTCGTG TCTTTGTGGTGACGAT GGTGGCATTC 270023 266 2.32e-05 GTGAGAGCTG GGTAGCGGTGGGTGTG GCAGGCGGCT 5653 158 2.87e-05 GGATAGCTCT TCTTTCGTTAGAGGAG TGTGTAGCTT 3935 32 5.80e-05 TGGCTCCTTG GCTATGGCGTGAAGAG CCATCTGAAT 17956 395 5.80e-05 CTCGTGCAAC CGACGGCGGCGGCGAC GACGACCAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 261808 1.1e-08 268_[+1]_216 37813 1.2e-07 200_[+1]_284 5582 2.6e-07 45_[+1]_439 11887 6.1e-07 186_[+1]_298 960 1e-06 177_[+1]_307 7669 3.9e-06 86_[+1]_398 24281 4.3e-06 179_[+1]_305 2064 4.3e-06 391_[+1]_93 8370 4.7e-06 260_[+1]_224 3409 6.8e-06 117_[+1]_367 2634 6.8e-06 377_[+1]_107 38933 9.7e-06 84_[+1]_400 23484 9.7e-06 408_[+1]_76 7367 1.3e-05 319_[+1]_165 21147 2.2e-05 131_[+1]_353 270023 2.3e-05 265_[+1]_219 5653 2.9e-05 157_[+1]_327 3935 5.8e-05 31_[+1]_453 17956 5.8e-05 394_[+1]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=16 seqs=19 261808 ( 269) TGTTGGTGTCGGGGAG 1 37813 ( 201) GCTTTGGGTAGAGGAG 1 5582 ( 46) GGTTTGGGTCGGTGAG 1 11887 ( 187) GCTCGGCGTTGAGGTG 1 960 ( 178) GGTTGATGTTGGGGAC 1 7669 ( 87) TCATGCTGTTGAAGAG 1 24281 ( 180) TCTCGGCGTGGGTGAC 1 2064 ( 392) GCTTGACGTCGCTGAG 1 8370 ( 261) CCATGGTGTTGGTGTG 1 3409 ( 118) CGTTGGAGTTGCAGAG 1 2634 ( 378) TGTCGGAGTAGGGGAA 1 38933 ( 85) TGTTGACGTTGACGAA 1 23484 ( 409) GCAGGGGGGAGAGGAG 1 7367 ( 320) TGTAGGTGGAGGGGCG 1 21147 ( 132) TCTTTGTGGTGACGAT 1 270023 ( 266) GGTAGCGGTGGGTGTG 1 5653 ( 158) TCTTTCGTTAGAGGAG 1 3935 ( 32) GCTATGGCGTGAAGAG 1 17956 ( 395) CGACGGCGGCGGCGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 10185 bayes= 9.25869 E= 2.2e-003 -1089 -58 87 67 -1089 116 104 -1089 -36 -1089 -1089 158 -78 -16 -212 113 -1089 -1089 168 -1 -78 -58 157 -1089 -136 16 46 26 -1089 -216 196 -233 -1089 -1089 20 148 -4 -16 -112 67 -1089 -1089 212 -1089 64 -116 104 -1089 -78 -58 87 -1 -1089 -1089 212 -1089 154 -216 -1089 -74 -136 -58 157 -233 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 19 E= 2.2e-003 0.000000 0.157895 0.421053 0.421053 0.000000 0.526316 0.473684 0.000000 0.210526 0.000000 0.000000 0.789474 0.157895 0.210526 0.052632 0.578947 0.000000 0.000000 0.736842 0.263158 0.157895 0.157895 0.684211 0.000000 0.105263 0.263158 0.315789 0.315789 0.000000 0.052632 0.894737 0.052632 0.000000 0.000000 0.263158 0.736842 0.263158 0.210526 0.105263 0.421053 0.000000 0.000000 1.000000 0.000000 0.421053 0.105263 0.473684 0.000000 0.157895 0.157895 0.421053 0.263158 0.000000 0.000000 1.000000 0.000000 0.789474 0.052632 0.000000 0.157895 0.105263 0.157895 0.684211 0.052632 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [GT][CG][TA][TC][GT]G[GTC]G[TG][TAC]G[GA][GT]GAG -------------------------------------------------------------------------------- Time 4.17 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 20 sites = 11 llr = 154 E-value = 5.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 15:5522638:454:45:3: pos.-specific C 93954:8:518625a4:a2a probability G :1::25::2:2::1:1::3: matrix T :11::4:411::3::25:3: bits 2.1 * * * 1.9 * * * 1.7 * * * * * 1.5 * * * * * * Relative 1.3 * * * * * * * Entropy 1.1 * ** * *** * * * (20.2 bits) 0.8 * ** ** *** * ** * 0.6 * ** ** *** ** ** * 0.4 ******** ****** ** * 0.2 ****************** * 0.0 -------------------- Multilevel CACAAGCACACCACCAACAC consensus C CCT TA ATA CT G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 38933 313 9.85e-10 GACAAGGCAC CACACGCTAACCACCAACGC CACACTCAAT 22433 458 6.05e-09 CATCCACCAT CTCAAGCACACCACCATCAC AAAAAATTCG 21147 421 1.86e-08 CACCGCCTGC CACCCACACACCAACTTCTC CAGAACTCGA 2634 478 2.69e-08 TCACACCACA CACCAGAAGACCAACCACGC GCA 11887 58 9.78e-08 CCCCAACTCT CCCCCTCAAAGCTCCCACCC ACAAGCAATG 7669 358 1.08e-07 TTCTTCTGCC CGCAGTCTCACCTCCCACCC CGAATCAAGT 264366 390 1.08e-07 CACGTAAGAC CACCATCACACACACGTCAC CATCAAACTG 5582 438 3.78e-07 AATTAGTGGA CACAATCTGCCAACCTACTC ACTTTCACGA 261808 110 5.78e-07 CGGCGATGCG CCCACGAACAGCAGCATCTC CACTTCGTTT 2064 45 2.11e-06 GCTCAACAGC AACAGGCAATCATCCATCAC CCATGTGATC 270023 470 2.87e-06 CCAGCGCAGC CCTCAACTTACACACCACGC GAACACTGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 38933 9.8e-10 312_[+2]_168 22433 6e-09 457_[+2]_23 21147 1.9e-08 420_[+2]_60 2634 2.7e-08 477_[+2]_3 11887 9.8e-08 57_[+2]_423 7669 1.1e-07 357_[+2]_123 264366 1.1e-07 389_[+2]_91 5582 3.8e-07 437_[+2]_43 261808 5.8e-07 109_[+2]_371 2064 2.1e-06 44_[+2]_436 270023 2.9e-06 469_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=20 seqs=11 38933 ( 313) CACACGCTAACCACCAACGC 1 22433 ( 458) CTCAAGCACACCACCATCAC 1 21147 ( 421) CACCCACACACCAACTTCTC 1 2634 ( 478) CACCAGAAGACCAACCACGC 1 11887 ( 58) CCCCCTCAAAGCTCCCACCC 1 7669 ( 358) CGCAGTCTCACCTCCCACCC 1 264366 ( 390) CACCATCACACACACGTCAC 1 5582 ( 438) CACAATCTGCCAACCTACTC 1 261808 ( 110) CCCACGAACAGCAGCATCTC 1 2064 ( 45) AACAGGCAATCATCCATCAC 1 270023 ( 470) CCTCAACTTACACACCACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 10101 bayes= 10.1966 E= 5.7e+000 -157 195 -1010 -1010 101 21 -133 -154 -1010 195 -1010 -154 101 95 -1010 -1010 75 63 -34 -1010 -57 -1010 98 46 -57 180 -1010 -1010 123 -1010 -1010 46 1 95 -34 -154 160 -137 -1010 -154 -1010 180 -34 -1010 43 143 -1010 -1010 101 -37 -1010 4 43 121 -133 -1010 -1010 209 -1010 -1010 43 63 -133 -54 101 -1010 -1010 78 -1010 209 -1010 -1010 1 -37 25 4 -1010 209 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 11 E= 5.7e+000 0.090909 0.909091 0.000000 0.000000 0.545455 0.272727 0.090909 0.090909 0.000000 0.909091 0.000000 0.090909 0.545455 0.454545 0.000000 0.000000 0.454545 0.363636 0.181818 0.000000 0.181818 0.000000 0.454545 0.363636 0.181818 0.818182 0.000000 0.000000 0.636364 0.000000 0.000000 0.363636 0.272727 0.454545 0.181818 0.090909 0.818182 0.090909 0.000000 0.090909 0.000000 0.818182 0.181818 0.000000 0.363636 0.636364 0.000000 0.000000 0.545455 0.181818 0.000000 0.272727 0.363636 0.545455 0.090909 0.000000 0.000000 1.000000 0.000000 0.000000 0.363636 0.363636 0.090909 0.181818 0.545455 0.000000 0.000000 0.454545 0.000000 1.000000 0.000000 0.000000 0.272727 0.181818 0.272727 0.272727 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- C[AC]C[AC][AC][GT]C[AT][CA]AC[CA][AT][CA]C[AC][AT]C[AGT]C -------------------------------------------------------------------------------- Time 7.99 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 19 llr = 215 E-value = 7.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 4:713:2:1:3:31:125111 pos.-specific C :416::2:345:::144:211 probability G 16::1a315217::643:424 matrix T 5:237:492423794115374 bits 2.1 * 1.9 * 1.7 * 1.5 * * * Relative 1.3 * * * * Entropy 1.1 * * * *** (16.3 bits) 0.8 ***** * **** * 0.6 ****** * **** * * 0.4 ****** *** ***** * ** 0.2 ****** ************** 0.0 --------------------- Multilevel TGACTGTTGTCGTTGGCAGTG consensus ACTTA G CCATA TCGTTGT sequence C TG A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 7367 245 5.70e-11 AAGACGTCGC AGACTGCTGCCGTTGCCAGTT TGATGATCCG 5582 86 1.16e-07 GGATGAAGCA TCATTGGTGGTGTTGCCACTG TTTTTCAATG 960 107 1.32e-07 AGGATTTGGA AGTCAGGTGGCGTTTGCTTTG TACGCTTCCT 7669 311 3.61e-07 AGAGAGGAGT TCTCTGTTCTCTTTTGCTCTG TTTAGCAGCC 8370 28 7.12e-07 CGGCTCCATT ACTTTGGTGTAGTTGAGAGTG CTGCAGGTTG 2634 159 7.12e-07 TAGACTGTCA TGACAGATGCAGTAGGGATTT GCTTGAAGCG 270023 199 9.79e-07 CTTACCAAGT TGACTGTTCCCGAATCGACTT CCATGTTGGT 3409 50 1.20e-06 AGTAAGCGTT GGACTGTGGTCGTTTGAAGGT TCTGATGGAC 11887 228 1.79e-06 GCGACGGCTC TGCTTGTTCTCGTTTGCTTGG TACGATATTC 23484 326 1.96e-06 ATGAAAGAGT TGTCAGTTTGGGTTGCATGTT AAACATCTAA 21147 82 1.96e-06 AGGAGAAGAA TGACTGGTGTAGATGTCATCG GTATTTAGAT 38933 33 2.16e-06 GTATGTGCCG ACAAAGCTGCCGATGCATTTT GAGATGCAGA 5653 242 3.11e-06 ACAGAGTACG AGATTGCTTTCGTTGTCTGAT GATCCGTCCA 17956 134 5.63e-06 ACCATTTGCG TCACGGTTGTGTATTGGAGTG AATAAGCTGC 24281 354 1.04e-05 ACTAAAGCCG TCACTGTTTGTTTTTACATTC CTTTTTTACT 37813 443 1.82e-05 GGTATCGTCG GCACAGCTTCAGTTCCGTGGT CATAAACACA 264366 133 1.82e-05 CTACACACGA AGAATGATCTAGTTGGGAATA GATCACATCA 3935 131 2.07e-05 GTATGAAGCG AGATTGGTACTTTTGCTTCTG AATAGGCGCT 22433 97 2.66e-05 CGGCCGTCGG ACACTGAGCCCTATGGATGGC CGCCAGCTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 7367 5.7e-11 244_[+3]_235 5582 1.2e-07 85_[+3]_394 960 1.3e-07 106_[+3]_373 7669 3.6e-07 310_[+3]_169 8370 7.1e-07 27_[+3]_452 2634 7.1e-07 158_[+3]_321 270023 9.8e-07 198_[+3]_281 3409 1.2e-06 49_[+3]_430 11887 1.8e-06 227_[+3]_252 23484 2e-06 325_[+3]_154 21147 2e-06 81_[+3]_398 38933 2.2e-06 32_[+3]_447 5653 3.1e-06 241_[+3]_238 17956 5.6e-06 133_[+3]_346 24281 1e-05 353_[+3]_126 37813 1.8e-05 442_[+3]_37 264366 1.8e-05 132_[+3]_347 3935 2.1e-05 130_[+3]_349 22433 2.7e-05 96_[+3]_383 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=19 7367 ( 245) AGACTGCTGCCGTTGCCAGTT 1 5582 ( 86) TCATTGGTGGTGTTGCCACTG 1 960 ( 107) AGTCAGGTGGCGTTTGCTTTG 1 7669 ( 311) TCTCTGTTCTCTTTTGCTCTG 1 8370 ( 28) ACTTTGGTGTAGTTGAGAGTG 1 2634 ( 159) TGACAGATGCAGTAGGGATTT 1 270023 ( 199) TGACTGTTCCCGAATCGACTT 1 3409 ( 50) GGACTGTGGTCGTTTGAAGGT 1 11887 ( 228) TGCTTGTTCTCGTTTGCTTGG 1 23484 ( 326) TGTCAGTTTGGGTTGCATGTT 1 21147 ( 82) TGACTGGTGTAGATGTCATCG 1 38933 ( 33) ACAAAGCTGCCGATGCATTTT 1 5653 ( 242) AGATTGCTTTCGTTGTCTGAT 1 17956 ( 134) TCACGGTTGTGTATTGGAGTG 1 24281 ( 354) TCACTGTTTGTTTTTACATTC 1 37813 ( 443) GCACAGCTTCAGTTCCGTGGT 1 264366 ( 133) AGAATGATCTAGTTGGGAATA 1 3935 ( 131) AGATTGGTACTTTTGCTTCTG 1 22433 ( 97) ACACTGAGCCCTATGGATGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 10080 bayes= 9.24372 E= 7.0e-002 64 -1089 -112 84 -1089 84 133 -1089 145 -216 -1089 -33 -136 142 -1089 -1 -4 -1089 -212 137 -1089 -1089 212 -1089 -78 -16 20 48 -1089 -1089 -112 176 -236 16 104 -33 -1089 65 -13 67 -4 101 -112 -74 -1089 -1089 168 -1 -4 -1089 -1089 148 -136 -1089 -1089 176 -1089 -216 133 48 -136 65 87 -133 -36 84 46 -233 96 -1089 -1089 84 -236 -16 87 26 -236 -216 -13 137 -236 -116 87 67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 19 E= 7.0e-002 0.421053 0.000000 0.105263 0.473684 0.000000 0.421053 0.578947 0.000000 0.736842 0.052632 0.000000 0.210526 0.105263 0.631579 0.000000 0.263158 0.263158 0.000000 0.052632 0.684211 0.000000 0.000000 1.000000 0.000000 0.157895 0.210526 0.263158 0.368421 0.000000 0.000000 0.105263 0.894737 0.052632 0.263158 0.473684 0.210526 0.000000 0.368421 0.210526 0.421053 0.263158 0.473684 0.105263 0.157895 0.000000 0.000000 0.736842 0.263158 0.263158 0.000000 0.000000 0.736842 0.105263 0.000000 0.000000 0.894737 0.000000 0.052632 0.578947 0.368421 0.105263 0.368421 0.421053 0.105263 0.210526 0.421053 0.315789 0.052632 0.526316 0.000000 0.000000 0.473684 0.052632 0.210526 0.421053 0.315789 0.052632 0.052632 0.210526 0.684211 0.052632 0.105263 0.421053 0.421053 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [TA][GC][AT][CT][TA]G[TGC]T[GCT][TCG][CA][GT][TA]T[GT][GC][CGA][AT][GTC][TG][GT] -------------------------------------------------------------------------------- Time 11.36 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 11887 4.07e-09 57_[+2(9.78e-08)]_109_\ [+1(6.08e-07)]_25_[+3(1.79e-06)]_147_[+2(3.13e-05)]_85 17956 2.94e-03 133_[+3(5.63e-06)]_240_\ [+1(5.80e-05)]_90 2064 2.08e-04 44_[+2(2.11e-06)]_327_\ [+1(4.26e-06)]_93 21147 2.57e-08 81_[+3(1.96e-06)]_29_[+1(2.16e-05)]_\ 273_[+2(1.86e-08)]_60 22433 5.17e-06 96_[+3(2.66e-05)]_340_\ [+2(6.05e-09)]_23 23484 2.83e-04 325_[+3(1.96e-06)]_62_\ [+1(9.73e-06)]_76 24281 4.48e-04 179_[+1(4.26e-06)]_158_\ [+3(1.04e-05)]_126 261808 2.95e-07 109_[+2(5.78e-07)]_139_\ [+1(1.07e-08)]_216 2634 4.93e-09 86_[+2(2.41e-05)]_52_[+3(7.12e-07)]_\ 76_[+3(3.58e-05)]_101_[+1(6.83e-06)]_84_[+2(2.69e-08)]_3 264366 5.33e-05 132_[+3(1.82e-05)]_236_\ [+2(1.08e-07)]_91 270023 1.42e-06 198_[+3(9.79e-07)]_46_\ [+1(2.32e-05)]_188_[+2(2.87e-06)]_11 3409 1.75e-04 49_[+3(1.20e-06)]_47_[+1(6.83e-06)]_\ 367 37813 1.24e-05 200_[+1(1.19e-07)]_226_\ [+3(1.82e-05)]_37 38933 8.93e-10 32_[+3(2.16e-06)]_31_[+1(9.73e-06)]_\ 54_[+3(8.52e-05)]_137_[+2(9.85e-10)]_168 3935 1.05e-02 31_[+1(5.80e-05)]_83_[+3(2.07e-05)]_\ 349 5582 5.12e-10 45_[+1(2.59e-07)]_24_[+3(1.16e-07)]_\ 179_[+1(1.14e-06)]_136_[+2(3.78e-07)]_43 5653 1.31e-03 157_[+1(2.87e-05)]_68_\ [+3(3.11e-06)]_238 7367 2.26e-08 244_[+3(5.70e-11)]_54_\ [+1(1.25e-05)]_165 7669 5.58e-09 86_[+1(3.85e-06)]_208_\ [+3(3.61e-07)]_26_[+2(1.08e-07)]_123 8370 6.48e-05 27_[+3(7.12e-07)]_189_\ [+1(9.47e-05)]_7_[+1(4.69e-06)]_224 960 4.07e-06 106_[+3(1.32e-07)]_50_\ [+1(1.01e-06)]_307 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************