******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/41/41.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 13551 1.0000 500 14772 1.0000 500 15259 1.0000 500 19818 1.0000 500 20452 1.0000 500 20683 1.0000 500 21419 1.0000 500 21879 1.0000 500 22049 1.0000 500 22449 1.0000 500 22694 1.0000 500 22944 1.0000 500 23420 1.0000 500 23462 1.0000 500 24042 1.0000 500 24901 1.0000 500 24914 1.0000 500 25629 1.0000 500 260900 1.0000 500 2611 1.0000 500 261633 1.0000 500 263147 1.0000 500 263181 1.0000 500 26364 1.0000 500 26726 1.0000 500 268256 1.0000 500 268398 1.0000 500 269158 1.0000 500 269704 1.0000 500 269763 1.0000 500 28100 1.0000 500 29049 1.0000 500 31380 1.0000 500 33619 1.0000 500 37166 1.0000 500 37277 1.0000 500 37539 1.0000 500 38248 1.0000 500 39979 1.0000 500 40028 1.0000 500 40034 1.0000 500 4138 1.0000 500 42074 1.0000 500 42307 1.0000 500 4424 1.0000 500 4896 1.0000 500 6752 1.0000 500 6760 1.0000 500 8533 1.0000 500 9749 1.0000 500 980 1.0000 500 ThpsCp082 1.0000 500 ThpsCp134 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/41/41.seqs.fa -oc motifs/41 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 53 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 26500 N= 53 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.258 C 0.232 G 0.245 T 0.264 Background letter frequencies (from dataset with add-one prior applied): A 0.258 C 0.232 G 0.245 T 0.264 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 53 llr = 536 E-value = 4.4e-038 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 52227344327262157:573 pos.-specific C 4436165268:73283:9526 probability G :21221:31:2:11::2::1: matrix T 124:1:11::11:5:21::11 bits 2.1 1.9 1.7 * 1.5 * Relative 1.3 * * Entropy 1.1 * * * * (14.6 bits) 0.8 **** * ** * 0.6 * *** ***** * ***** 0.4 * **** ***** ******* 0.2 ********************* 0.0 --------------------- Multilevel ACTCACCACCACATCAACAAC consensus C C AAGAA ACA C C A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 6752 394 8.95e-09 GAAACGCAAA AAACACAACCGCATCCACAAC AATACCAAAG 14772 293 5.39e-08 CACAAGCCAA ACGCACCACCACCGCAGCCAC AAAAGCTGTG 2611 415 8.39e-08 TCATTCTAGC AGCCACAGCCACATCAGCATC ATTACTCACA 6760 475 1.29e-07 CTGTGCACCT CTTCAACGCAACACCAACAAA ACACA 24901 447 1.29e-07 GTTCACACCC TCCCACCGCCACCGCAACCAA TACAACACAA 23420 408 1.71e-07 TGTTGTATCC ACCCAAAACTACAACCACCAC CGAGACGAGA 22049 417 2.92e-07 CCTCTTCTTG ACACAACACCGTATCCACCAC CGTCCACACC 268256 93 3.33e-07 TCCTCCACTC ACCAACCCAAACATCATCCAC ACTCGCCCTC 26726 420 3.33e-07 GTTTGTACGC ACTCACCAACTCACCTGCCAC TGTCGCTTCC 260900 374 3.33e-07 CGTCCCCTCG CCCCACCACCTCGTCATCCAC TCACCCACCC 40028 448 4.31e-07 GACAGTGCCT CCACCACCCCACATCAACACC ACAAGCATAG 9749 219 6.27e-07 ACCAAAGTTA AGCCACCGCCTCAAACACAAC AATCCTCACC 37277 476 6.27e-07 TCCGTCAACT CATCATCACCACATCAACCAT CATC 37166 290 7.09e-07 TCAATACATA CGCTACAGCAACAACAACAAC AGCGAGCAAT 40034 69 9.03e-07 GCTCACCGCT AACAACCACAACCTCTTCCAC TCGTCGTCTC 20452 480 1.44e-06 TTCACCAGAA AGGCACCACAACACCAGCACC 42074 442 1.62e-06 CCTGTCCCAG CTGCAACAACAACCCCACAAC CCCTCGCCTC 21419 413 1.62e-06 GTGCAACTCA ACTCACCGCCACACACGCCCA GTGTCAGTGT 38248 257 1.81e-06 TTCGCCTCGG ACTCACCAGCGCCGCCACAAA AGAATCGGCT 980 91 2.02e-06 TACCACGCGG CAAGAACAACACGACAACAAC TAGTTGATTG 4896 344 2.26e-06 GACTGTAGTG ATTGACAACCAAATTAACAAA CTATTCGCGA 269158 364 2.52e-06 GTTCAACACC AATCACAGCCACATCTACGCA TAGATGACGT 269704 466 2.81e-06 TTCATCAACG TCAGTACACCACATCCACAAA TCTTCCTCGT 263181 398 2.81e-06 GAGTTTTTTT AGCCAGTGACGCATCAACCAA CAGACAACGA 21879 60 2.81e-06 CCCTCTGGTG ATTGACCGTCACATCAACCGC CGAATGCGGT 39979 471 3.48e-06 ACTACTCTGC ACCCAACCCCAAACAAACAGC ACACTCAAG 26364 376 4.29e-06 TCGTCGCATT CTCGACCGCAACAACAGCCAT CAATGACGTT 25629 81 4.29e-06 ATGAGAGCTC CCGATCACCCACATCCACACA TCAGCTCCGC 263147 466 5.27e-06 ACGCCAGTCT CTTCTCTAACACCGCTACCAC CCATTGAGGC 13551 298 5.84e-06 TCAGCAATGG ATTCAAATCAACATATACCAA ACCGTACTAC 42307 272 9.55e-06 CAGCGCCTCC AGCACCACCCACCACCACACC CTGACGTACA 4424 404 1.16e-05 GCCACCGACG CACCAACGACGAGCCCACCAC CAAGGCAATA 22944 420 1.27e-05 GCTCCCACTC TGCGACAACCTCGTCTACAAC ATACAGAAAC 22449 435 1.27e-05 ACAGACCTCG AAGCACCAACACATCTAGCTC ACTACGTTCA 23462 467 1.39e-05 TCCGGGCAAC ACACAACCCCACCACACCCAT CCGCACACAA 24042 186 1.84e-05 TTCGACGTAT CGTCTGAGCCGCCTCCACCAT TCCCCCCCAT 269763 420 2.01e-05 TCTGTGACGC ACAAACCAACCCATCAGCATC CTTGTCTATC 22694 356 2.40e-05 TACGACAGAC ACGAGGAGACACCACATCCAC CCGTCGGGTC 37539 479 2.62e-05 ACCTCCTTTT CTACTGATACAAAACAACAAC C 33619 470 2.62e-05 TTCAATACAC TCTAACAAACACATCTTCCCT CTCTTCCCAC 24914 480 2.62e-05 ACCTCCTTTT CTACTGATACAAAACAACAAC ThpsCp134 280 2.85e-05 ACTGATATTG CGTGGAAAGAACATCTACAAA AAATTGCATT ThpsCp082 324 2.85e-05 ACTGATATTG CGTGGAAAGAACATCTACAAA AAATTGCATT 261633 371 2.85e-05 CAACCGCCCA ACTAAAAGCAAACTACACAGC ATTGCTGATC 268398 434 3.11e-05 CTATCCCCCT CCTGGCAGCCGTCTCATCCAA TACACGTACA 4138 411 3.68e-05 CGTACCTCGT CCTCGCTTCCGCCCCCACACA TGTCGTTCGT 15259 127 4.72e-05 TACCTCCTCC ATCCGCAGACAATTCATCAAA GCTGACTATC 20683 257 6.51e-05 TAGTGAACGC ACTGACTCCAACAAATACATC ACCGATGCTG 8533 421 8.88e-05 AGCGAAGTTC AAACAAAGACAAAGAAAGAAC TGAGTTCCCT 29049 286 1.03e-04 AACCATTTCT CATCGCACCTTTCTCAACAAC ATTTATCTCT 19818 413 1.72e-04 ACGATGTAGC CACAGACGACGAACCAGCCGC TGAAGACTTT 31380 107 2.26e-04 TTTCAATAAC ACTTCCTTCCACCTCAATAAC GTCGTCTTTC 28100 61 2.96e-04 GTGGCATCGG CCTAGCCAACAAAGTCGCCGC CTACGCCCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 6752 8.9e-09 393_[+1]_86 14772 5.4e-08 292_[+1]_187 2611 8.4e-08 414_[+1]_65 6760 1.3e-07 474_[+1]_5 24901 1.3e-07 446_[+1]_33 23420 1.7e-07 407_[+1]_72 22049 2.9e-07 416_[+1]_63 268256 3.3e-07 92_[+1]_387 26726 3.3e-07 419_[+1]_60 260900 3.3e-07 373_[+1]_106 40028 4.3e-07 447_[+1]_32 9749 6.3e-07 218_[+1]_261 37277 6.3e-07 475_[+1]_4 37166 7.1e-07 289_[+1]_190 40034 9e-07 68_[+1]_411 20452 1.4e-06 479_[+1] 42074 1.6e-06 441_[+1]_38 21419 1.6e-06 412_[+1]_67 38248 1.8e-06 256_[+1]_223 980 2e-06 90_[+1]_389 4896 2.3e-06 343_[+1]_136 269158 2.5e-06 363_[+1]_116 269704 2.8e-06 465_[+1]_14 263181 2.8e-06 397_[+1]_82 21879 2.8e-06 59_[+1]_420 39979 3.5e-06 470_[+1]_9 26364 4.3e-06 375_[+1]_104 25629 4.3e-06 80_[+1]_399 263147 5.3e-06 465_[+1]_14 13551 5.8e-06 297_[+1]_182 42307 9.6e-06 271_[+1]_208 4424 1.2e-05 403_[+1]_76 22944 1.3e-05 419_[+1]_60 22449 1.3e-05 434_[+1]_45 23462 1.4e-05 466_[+1]_13 24042 1.8e-05 185_[+1]_294 269763 2e-05 419_[+1]_60 22694 2.4e-05 355_[+1]_124 37539 2.6e-05 478_[+1]_1 33619 2.6e-05 469_[+1]_10 24914 2.6e-05 479_[+1] ThpsCp134 2.9e-05 279_[+1]_200 ThpsCp082 2.9e-05 323_[+1]_156 261633 2.9e-05 370_[+1]_109 268398 3.1e-05 433_[+1]_46 4138 3.7e-05 410_[+1]_69 15259 4.7e-05 126_[+1]_353 20683 6.5e-05 256_[+1]_223 8533 8.9e-05 420_[+1]_59 29049 0.0001 285_[+1]_194 19818 0.00017 412_[+1]_67 31380 0.00023 106_[+1]_373 28100 0.0003 60_[+1]_419 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=53 6752 ( 394) AAACACAACCGCATCCACAAC 1 14772 ( 293) ACGCACCACCACCGCAGCCAC 1 2611 ( 415) AGCCACAGCCACATCAGCATC 1 6760 ( 475) CTTCAACGCAACACCAACAAA 1 24901 ( 447) TCCCACCGCCACCGCAACCAA 1 23420 ( 408) ACCCAAAACTACAACCACCAC 1 22049 ( 417) ACACAACACCGTATCCACCAC 1 268256 ( 93) ACCAACCCAAACATCATCCAC 1 26726 ( 420) ACTCACCAACTCACCTGCCAC 1 260900 ( 374) CCCCACCACCTCGTCATCCAC 1 40028 ( 448) CCACCACCCCACATCAACACC 1 9749 ( 219) AGCCACCGCCTCAAACACAAC 1 37277 ( 476) CATCATCACCACATCAACCAT 1 37166 ( 290) CGCTACAGCAACAACAACAAC 1 40034 ( 69) AACAACCACAACCTCTTCCAC 1 20452 ( 480) AGGCACCACAACACCAGCACC 1 42074 ( 442) CTGCAACAACAACCCCACAAC 1 21419 ( 413) ACTCACCGCCACACACGCCCA 1 38248 ( 257) ACTCACCAGCGCCGCCACAAA 1 980 ( 91) CAAGAACAACACGACAACAAC 1 4896 ( 344) ATTGACAACCAAATTAACAAA 1 269158 ( 364) AATCACAGCCACATCTACGCA 1 269704 ( 466) TCAGTACACCACATCCACAAA 1 263181 ( 398) AGCCAGTGACGCATCAACCAA 1 21879 ( 60) ATTGACCGTCACATCAACCGC 1 39979 ( 471) ACCCAACCCCAAACAAACAGC 1 26364 ( 376) CTCGACCGCAACAACAGCCAT 1 25629 ( 81) CCGATCACCCACATCCACACA 1 263147 ( 466) CTTCTCTAACACCGCTACCAC 1 13551 ( 298) ATTCAAATCAACATATACCAA 1 42307 ( 272) AGCACCACCCACCACCACACC 1 4424 ( 404) CACCAACGACGAGCCCACCAC 1 22944 ( 420) TGCGACAACCTCGTCTACAAC 1 22449 ( 435) AAGCACCAACACATCTAGCTC 1 23462 ( 467) ACACAACCCCACCACACCCAT 1 24042 ( 186) CGTCTGAGCCGCCTCCACCAT 1 269763 ( 420) ACAAACCAACCCATCAGCATC 1 22694 ( 356) ACGAGGAGACACCACATCCAC 1 37539 ( 479) CTACTGATACAAAACAACAAC 1 33619 ( 470) TCTAACAAACACATCTTCCCT 1 24914 ( 480) CTACTGATACAAAACAACAAC 1 ThpsCp134 ( 280) CGTGGAAAGAACATCTACAAA 1 ThpsCp082 ( 324) CGTGGAAAGAACATCTACAAA 1 261633 ( 371) ACTAAAAGCAAACTACACAGC 1 268398 ( 434) CCTGGCAGCCGTCTCATCCAA 1 4138 ( 411) CCTCGCTTCCGCCCCCACACA 1 15259 ( 127) ATCCGCAGACAATTCATCAAA 1 20683 ( 257) ACTGACTCCAACAAATACATC 1 8533 ( 421) AAACAAAGACAAAGAAAGAAC 1 29049 ( 286) CATCGCACCTTTCTCAACAAC 1 19818 ( 413) CACAGACGACGAACCAGCCGC 1 31380 ( 107) ACTTCCTTCCACCTCAATAAC 1 28100 ( 61) CCTAGCCAACAAAGTCGCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 25440 bayes= 8.90388 E= 4.4e-038 103 77 -1237 -181 -45 90 -38 -48 -45 38 -112 59 -45 133 -38 -280 135 -204 -53 -122 22 133 -138 -380 68 108 -1237 -148 68 -62 47 -148 31 138 -212 -380 -32 170 -1237 -280 147 -362 -53 -148 -32 166 -1237 -222 127 29 -170 -380 -32 -45 -112 95 -97 184 -1237 -280 98 29 -1237 -35 139 -362 -53 -100 -1237 202 -270 -380 103 96 -370 -1237 139 -62 -138 -181 13 142 -1237 -148 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 53 E= 4.4e-038 0.528302 0.396226 0.000000 0.075472 0.188679 0.433962 0.188679 0.188679 0.188679 0.301887 0.113208 0.396226 0.188679 0.584906 0.188679 0.037736 0.660377 0.056604 0.169811 0.113208 0.301887 0.584906 0.094340 0.018868 0.415094 0.490566 0.000000 0.094340 0.415094 0.150943 0.339623 0.094340 0.320755 0.603774 0.056604 0.018868 0.207547 0.754717 0.000000 0.037736 0.716981 0.018868 0.169811 0.094340 0.207547 0.735849 0.000000 0.056604 0.622642 0.283019 0.075472 0.018868 0.207547 0.169811 0.113208 0.509434 0.132075 0.830189 0.000000 0.037736 0.509434 0.283019 0.000000 0.207547 0.679245 0.018868 0.169811 0.132075 0.000000 0.943396 0.037736 0.018868 0.528302 0.452830 0.018868 0.000000 0.679245 0.150943 0.094340 0.075472 0.283019 0.622642 0.000000 0.094340 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [AC]C[TC]CA[CA][CA][AG][CA][CA]A[CA][AC][TA]C[ACT]AC[AC]A[CA] -------------------------------------------------------------------------------- Time 21.34 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 42 llr = 414 E-value = 1.1e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 3164:1:42311:2121:::: pos.-specific C :::1:1113:2:2111::::: probability G 46149264452852477166a matrix T 323116311252355:2944: bits 2.1 * 1.9 * 1.7 * 1.5 * * Relative 1.3 * * Entropy 1.1 * * **** (14.2 bits) 0.8 * * * ****** 0.6 ** * * * ****** 0.4 *** *** * ** ****** 0.2 ********************* 0.0 --------------------- Multilevel GGAGGTGGGGTGGTTGGTGGG consensus TTTA GTACA T G TT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 14772 235 7.79e-10 CCACCCACGT GGAAGTGACGTGGCTGGTGGG AGGCCCACGA 268398 183 6.84e-09 GATGAGGTGA AGAAGTTGAGTGTTTGGTGTG CGAGGCAGAA 23462 324 3.55e-08 TTGTGTAGCT TGTTGTGTGGTGGTTGGTGTG TTGAGTGGTG 263147 230 4.96e-08 TGTTGGTTGG TGAGGGGTGTTGGTTGGTTGG TCTGCGATGA 23420 161 1.73e-07 GCTTCGGTGG GGTGGTCGGTCGGTGGGTGGG TGTCAGCGTC 22694 115 2.01e-07 AGAGAGGGTT TTGAGTTGGGTGGGTGGTGGG GAGTGAACCT 20683 412 2.01e-07 CACCAGCCAG ATTAGGGGGATGGGTGGTGGG GTGATGTTTT 260900 184 4.06e-07 AGGAGAGTCA GGAAGAGAAGTGGTGGTTTTG GTTGTTCGGC ThpsCp134 312 1.47e-06 AATTGCATTA TTACGTGATGCGGTAGGTTGG AGAAGTTACG ThpsCp082 356 1.47e-06 AATTGCATTA TTACGTGATGCGGTAGGTTGG AGAAGTTACG 261633 90 2.09e-06 AGGTGAGCGA GGAAGTCGGAGGGTGGGAGGG ACAGGAGGAT 4424 161 2.35e-06 CATTGTTTGA GGGTGGTGGGTGTGGGGTGTG GGCGGGACGG 2611 317 2.95e-06 TTTCATCATG TGAGGTTTGAGGTTGCGTGGG CGAGATATGC 29049 3 3.29e-06 GT GGTAGGGGAAGGGGTGATGGG AGGGGAAGAG 37277 140 3.68e-06 CGGATTGTAC TTTGGTGACGTGTTTAGGGGG GAGTGAATAA 37539 41 4.57e-06 ATTGAATTGA AGTGGTTTCTTGTTGGTTGTG GCTGTTCCCG 26726 62 4.57e-06 GAAGGAGATT GGGAGTGCTGTTGTGGATGGG TTAGAGGAGC 24914 42 4.57e-06 ATTGAATTGA AGTGGTTTCTTGTTGGTTGTG GCTGTTCCCG 24901 113 5.08e-06 TTGGATTTCA TCGGGGGACGAGGTGGGTGGG ATGGAGAGGA 19818 187 6.26e-06 CACGGGGATG GTATTTGAGTTGGCTGGTGTG TTGGTGCCAT 269763 125 7.69e-06 GAGGGATATT TGAAGAGCGGTGCATCGTTGG AGATCAATGA 22449 138 9.39e-06 CATTGTTTGT AGAGGCGATGTGATTGATTGG GTCGGTTGTT 269158 133 1.04e-05 ATCCGGCTAC GGAGGGGGGGCACCTAGTGGG GACGACGATG 42074 9 1.14e-05 CGGAGGTT AGTTGGGCCAAGTGTGGTGGG TGGTGATGAT 8533 43 1.38e-05 TGAGATTGTG GGATGTGGCAGGCAAGTTTGG ACGAGGTGCT 33619 193 1.38e-05 CCCCATCCTT TGGGGGCGGGGGCAGGGTTGG GTAGTGAACC 13551 357 1.38e-05 CCCTCACGTG GAAAGACACGCGTATGGTGGG TCTGCCCGTC 31380 390 1.52e-05 AGACTTGTGA AAAGGTGAAGCGGATTGTTGG CTCGTGTTCG 22944 300 2.19e-05 GCTTTGCGCT TTAAGCTGTTCGTTTGGTTTG TTGTTAGTCT 22049 67 2.84e-05 AAGTTAGTGG AGAGGTGCTAATTGTAGTGGG GTTAAGATGA 20452 80 3.37e-05 GACTCCATGT TGAATTGAGTTTGAGCGTGTG AAGAAGAGTT 263181 14 5.08e-05 CTGTGAGTTG TGACGTGACATGATAGGCGTG TATCAATGGC 28100 237 5.95e-05 CGAAAAATTG AGAGGTTGAGAGCTTTGGGTG TTAATGTGGT 268256 470 5.95e-05 TTGGCATGTT GTTTTTTGGATGCTGGATGTG CCTATATCGT 4138 318 6.93e-05 ACCATGGTGC AGAGGGTGGGGTGTCGTGGGG CGCCGCTCAA 6760 176 8.06e-05 TTAGTCCACT AAAAGTGAAATTGCTAATTGG TCACAAAAAT 980 238 9.33e-05 GCATTGACGT TAACGTGGGTTTGGCAGTTGG TCTTTTGGCC 4896 24 9.33e-05 AGCTTCCTGT GTTGGAGAGATAGAGAGTTTG GAAAGAGGTG 39979 84 9.33e-05 TCTGAATCAC AGTAGTTGCAAGTTGGAATTG CCTACCTGCC 269704 370 1.08e-04 AGCAAGAACA AGAGGTGGAGGACACGTTTTG GCGGGATGCT 42307 163 1.52e-04 CTGCCTCACT GCAAGAGCAGTGTCAAGTGTG GACATGTAAT 24042 239 1.85e-04 TGACTTCTTT GGACTCGACGCTTTGGTTTTG GGATCCTGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 14772 7.8e-10 234_[+2]_245 268398 6.8e-09 182_[+2]_297 23462 3.6e-08 323_[+2]_156 263147 5e-08 229_[+2]_250 23420 1.7e-07 160_[+2]_319 22694 2e-07 114_[+2]_365 20683 2e-07 411_[+2]_68 260900 4.1e-07 183_[+2]_296 ThpsCp134 1.5e-06 311_[+2]_168 ThpsCp082 1.5e-06 355_[+2]_124 261633 2.1e-06 89_[+2]_390 4424 2.3e-06 160_[+2]_319 2611 2.9e-06 316_[+2]_163 29049 3.3e-06 2_[+2]_477 37277 3.7e-06 139_[+2]_340 37539 4.6e-06 40_[+2]_439 26726 4.6e-06 61_[+2]_418 24914 4.6e-06 41_[+2]_438 24901 5.1e-06 112_[+2]_367 19818 6.3e-06 186_[+2]_293 269763 7.7e-06 124_[+2]_355 22449 9.4e-06 137_[+2]_342 269158 1e-05 132_[+2]_347 42074 1.1e-05 8_[+2]_471 8533 1.4e-05 42_[+2]_437 33619 1.4e-05 192_[+2]_287 13551 1.4e-05 356_[+2]_123 31380 1.5e-05 389_[+2]_90 22944 2.2e-05 299_[+2]_180 22049 2.8e-05 66_[+2]_413 20452 3.4e-05 79_[+2]_400 263181 5.1e-05 13_[+2]_466 28100 5.9e-05 236_[+2]_243 268256 5.9e-05 469_[+2]_10 4138 6.9e-05 317_[+2]_162 6760 8.1e-05 175_[+2]_304 980 9.3e-05 237_[+2]_242 4896 9.3e-05 23_[+2]_456 39979 9.3e-05 83_[+2]_396 269704 0.00011 369_[+2]_110 42307 0.00015 162_[+2]_317 24042 0.00019 238_[+2]_241 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=42 14772 ( 235) GGAAGTGACGTGGCTGGTGGG 1 268398 ( 183) AGAAGTTGAGTGTTTGGTGTG 1 23462 ( 324) TGTTGTGTGGTGGTTGGTGTG 1 263147 ( 230) TGAGGGGTGTTGGTTGGTTGG 1 23420 ( 161) GGTGGTCGGTCGGTGGGTGGG 1 22694 ( 115) TTGAGTTGGGTGGGTGGTGGG 1 20683 ( 412) ATTAGGGGGATGGGTGGTGGG 1 260900 ( 184) GGAAGAGAAGTGGTGGTTTTG 1 ThpsCp134 ( 312) TTACGTGATGCGGTAGGTTGG 1 ThpsCp082 ( 356) TTACGTGATGCGGTAGGTTGG 1 261633 ( 90) GGAAGTCGGAGGGTGGGAGGG 1 4424 ( 161) GGGTGGTGGGTGTGGGGTGTG 1 2611 ( 317) TGAGGTTTGAGGTTGCGTGGG 1 29049 ( 3) GGTAGGGGAAGGGGTGATGGG 1 37277 ( 140) TTTGGTGACGTGTTTAGGGGG 1 37539 ( 41) AGTGGTTTCTTGTTGGTTGTG 1 26726 ( 62) GGGAGTGCTGTTGTGGATGGG 1 24914 ( 42) AGTGGTTTCTTGTTGGTTGTG 1 24901 ( 113) TCGGGGGACGAGGTGGGTGGG 1 19818 ( 187) GTATTTGAGTTGGCTGGTGTG 1 269763 ( 125) TGAAGAGCGGTGCATCGTTGG 1 22449 ( 138) AGAGGCGATGTGATTGATTGG 1 269158 ( 133) GGAGGGGGGGCACCTAGTGGG 1 42074 ( 9) AGTTGGGCCAAGTGTGGTGGG 1 8533 ( 43) GGATGTGGCAGGCAAGTTTGG 1 33619 ( 193) TGGGGGCGGGGGCAGGGTTGG 1 13551 ( 357) GAAAGACACGCGTATGGTGGG 1 31380 ( 390) AAAGGTGAAGCGGATTGTTGG 1 22944 ( 300) TTAAGCTGTTCGTTTGGTTTG 1 22049 ( 67) AGAGGTGCTAATTGTAGTGGG 1 20452 ( 80) TGAATTGAGTTTGAGCGTGTG 1 263181 ( 14) TGACGTGACATGATAGGCGTG 1 28100 ( 237) AGAGGTTGAGAGCTTTGGGTG 1 268256 ( 470) GTTTTTTGGATGCTGGATGTG 1 4138 ( 318) AGAGGGTGGGGTGTCGTGGGG 1 6760 ( 176) AAAAGTGAAATTGCTAATTGG 1 980 ( 238) TAACGTGGGTTTGGCAGTTGG 1 4896 ( 24) GTTGGAGAGATAGAGAGTTTG 1 39979 ( 84) AGTAGTTGCAAGTTGGAATTG 1 269704 ( 370) AGAGGTGGAGGACACGTTTTG 1 42307 ( 163) GCAAGAGCAGTGTCAAGTGTG 1 24042 ( 239) GGACTCGACGCTTTGGTTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 25440 bayes= 9.54542 E= 1.1e-008 26 -1204 54 34 -144 -228 139 -30 126 -1204 -104 -1 47 -96 63 -89 -1204 -1204 188 -147 -112 -170 -20 117 -1204 -129 139 -1 47 -96 72 -115 -44 17 72 -89 14 -1204 109 -47 -112 -29 -56 99 -185 -1204 163 -66 -244 -48 96 23 -44 -96 -56 99 -112 -170 54 78 -63 -170 154 -247 -85 -1204 149 -66 -244 -328 -178 170 -1204 -1204 133 53 -1204 -1204 128 62 -1204 -1204 203 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 42 E= 1.1e-008 0.309524 0.000000 0.357143 0.333333 0.095238 0.047619 0.642857 0.214286 0.619048 0.000000 0.119048 0.261905 0.357143 0.119048 0.380952 0.142857 0.000000 0.000000 0.904762 0.095238 0.119048 0.071429 0.214286 0.595238 0.000000 0.095238 0.642857 0.261905 0.357143 0.119048 0.404762 0.119048 0.190476 0.261905 0.404762 0.142857 0.285714 0.000000 0.523810 0.190476 0.119048 0.190476 0.166667 0.523810 0.071429 0.000000 0.761905 0.166667 0.047619 0.166667 0.476190 0.309524 0.190476 0.119048 0.166667 0.523810 0.119048 0.071429 0.357143 0.452381 0.166667 0.071429 0.714286 0.047619 0.142857 0.000000 0.690476 0.166667 0.047619 0.023810 0.071429 0.857143 0.000000 0.000000 0.619048 0.380952 0.000000 0.000000 0.595238 0.404762 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [GTA][GT][AT][GA]G[TG][GT][GA][GC][GA]TG[GT]T[TG]GGT[GT][GT]G -------------------------------------------------------------------------------- Time 42.14 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 12 sites = 53 llr = 404 E-value = 4.2e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 53:72:a4164: pos.-specific C :1:1:::2111: probability G 33a13a:28229 matrix T 24:15::2:131 bits 2.1 * * 1.9 * ** 1.7 * ** 1.5 * ** * Relative 1.3 * ** * * Entropy 1.1 * ** * * (11.0 bits) 0.8 * ** * * 0.6 * ***** * * 0.4 * ***** ** * 0.2 * ***** **** 0.0 ------------ Multilevel ATGATGAAGAAG consensus GG G C GT sequence A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 37539 122 1.59e-06 GGTGGCTGCT ATGAGGAAGAGG GATGTGGTTG 269704 154 1.59e-06 CGCCAGAACG GAGATGAAGAAG AGATTCAGAG 24914 123 1.59e-06 GGTGGCTGCT ATGAGGAAGAGG GATGTGGTTG 2611 182 2.13e-06 GTACGTCAAA ATGAGGACGAAG TCGCGTGCAG 40028 201 3.46e-06 GACAATGAAG ATGAGGAGGAAG CAGAGTGTAC 268398 50 5.20e-06 GAAAGGTGAA GGGATGACGAAG ATACGTCAAG 15259 299 9.02e-06 TATGCAACTC TAGATGAAGATG TCCAAAAGAA 26726 196 1.06e-05 AGAGAGGTGG AGGAGGATGATG GTTGTGAGCT 22694 14 1.06e-05 ATGGCGTAGG GTGATGATGATG CAGACGAAGG 42074 32 1.24e-05 GTGGTGGGTG GTGATGATGAGG TAACAGTACT 21419 111 1.44e-05 GACGAGATGT TGGAGGAAGATG GAGTGCTGTA 268256 194 1.68e-05 AACGACAACG ATGATGATGGTG CATCCACCAC 263147 27 2.26e-05 TGCAACTGAG TTGATGATGAGG CACATGTTGC 4424 29 2.96e-05 TTGACATGGC GTGATGAAGCAG ATTTTATTTG 38248 300 3.40e-05 AGCGAACAAC TTGGTGAAGAAG CTCGTCGTCG 39979 269 3.87e-05 TCAACAAGCA ACGAGGACGAGG GAATCGACCG 29049 440 3.87e-05 ACGACAGGGG AGGCGGAAGAGG CAGAGTCTCT 24901 212 3.87e-05 AAGGAGAGCG AGGAGGAGGGTG GCATGTCGTT 20452 162 4.39e-05 TTATGATGGT ATGATGATGTGG TGAGGAGACG 37166 324 4.98e-05 GAGCAATTAC AAGATGAAGATT ACTGCTATTC 269763 363 4.98e-05 CTACCTTCGT GGGAAGAGGAAG ATTGCTTCAA 8533 109 5.62e-05 ACAATCGGCC AGGAGGAAAATG TTCTAAGACG 31380 342 5.62e-05 GATGGCAGTG AGGATGAGAAAG AGAGAACGCA 4896 286 7.09e-05 CGATAATTCA GGGAGGAAAAAG CACGAAGAAC 263181 86 7.92e-05 CTTGCTCCCG AGGCTGACGGAG ATGGAGGCAG 23462 139 7.92e-05 TTTGTAGTGA TGGATGATGGTG ATGTGTTGAT 22944 51 7.92e-05 GGCTGAACAG AAGATGATGAAT GCATGTCAAT 28100 326 8.88e-05 GTATTTGGAG ACGAAGAAGGAG AGAATGAATC 260900 155 1.21e-04 TGCTGTGAAC GAGATGAAGGCG AGGGACGAGG 9749 416 1.34e-04 ACGTATCAAC TTGAAGAAGTAG GTTAATGTTT 40034 482 1.78e-04 GCCACCACCG AAGAAGACGACG ACGACGA ThpsCp134 13 1.94e-04 ATTTTAGCTT ATGGTGAACAAG TTATAAAAGA ThpsCp082 57 1.94e-04 ATTTTAGCTT ATGGTGAACAAG TTATAAAAGA 980 30 1.94e-04 GATTTAGAAT TTGGGGAGGATG CTATCTGAAT 6760 24 1.94e-04 CAATGTTGTG ATGGAGAGGAGG CCCGTCATGA 23420 30 1.94e-04 GTGAAGTAGA AAGTGGAAGGAG TAATTCCAGC 4138 137 2.31e-04 CATTCCAGCT AGGAGGAGCATG AATTGACCAC 33619 265 2.52e-04 TTTGGCAAGA GGGGTGATGGTG GAAAGGGTGG 22449 60 2.73e-04 TATGACGGGA GCGCGGAGGAAG GAAGAAAAGA 26364 79 2.97e-04 AATGGCAACA GTGTTGAAGTAG AATTGCAGAT 24042 420 2.97e-04 AAAGAAATGA GAGCAGAAGGAG GATTCATATT 14772 404 2.97e-04 AAACAGAGTG ACGGTGAAGCAG TGCTGTTTGT 6752 219 3.21e-04 ATTCGTCAAG TAGATGACAGAG GCGTGCATGC 25629 431 3.47e-04 ATCGATCGGA GAGCTGAAGCGG TGTCTGTGTT 19818 469 3.74e-04 GACCTCGACC AAGAAGACGGCG CCGCCGAGGC 20683 375 4.68e-04 TGGGCAGCTC ATGTTGAGGCAG TGCACCGACA 261633 113 5.36e-04 TGGGAGGGAC AGGAGGATGTTT ATTTTGATCT 42307 43 6.51e-04 ATCTAGCGAA TGGAGGAAGTGT GTTCAAAATG 22049 91 6.51e-04 TAGTGGGGTT AAGATGAGAAGT AGTCTATATC 21879 153 6.51e-04 TGGCGAGCAT ACGCTGACAATG CCAGTGTGAT 37277 97 7.83e-04 AGGTCAACCA AAGATGGCGGTG TAAGAGAGCT 269158 385 7.83e-04 CATCTACGCA TAGATGACGTGT CACTCGGTGC 13551 392 7.83e-04 CCCGTCAACC GTGCAGACGTGG CTGTTTGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 37539 1.6e-06 121_[+3]_367 269704 1.6e-06 153_[+3]_335 24914 1.6e-06 122_[+3]_366 2611 2.1e-06 181_[+3]_307 40028 3.5e-06 200_[+3]_288 268398 5.2e-06 49_[+3]_439 15259 9e-06 298_[+3]_190 26726 1.1e-05 195_[+3]_293 22694 1.1e-05 13_[+3]_475 42074 1.2e-05 31_[+3]_457 21419 1.4e-05 110_[+3]_378 268256 1.7e-05 193_[+3]_295 263147 2.3e-05 26_[+3]_462 4424 3e-05 28_[+3]_460 38248 3.4e-05 299_[+3]_189 39979 3.9e-05 268_[+3]_220 29049 3.9e-05 439_[+3]_49 24901 3.9e-05 211_[+3]_277 20452 4.4e-05 161_[+3]_327 37166 5e-05 323_[+3]_165 269763 5e-05 362_[+3]_126 8533 5.6e-05 108_[+3]_380 31380 5.6e-05 341_[+3]_147 4896 7.1e-05 285_[+3]_203 263181 7.9e-05 85_[+3]_403 23462 7.9e-05 138_[+3]_350 22944 7.9e-05 50_[+3]_438 28100 8.9e-05 325_[+3]_163 260900 0.00012 154_[+3]_334 9749 0.00013 415_[+3]_73 40034 0.00018 481_[+3]_7 ThpsCp134 0.00019 12_[+3]_476 ThpsCp082 0.00019 56_[+3]_432 980 0.00019 29_[+3]_459 6760 0.00019 23_[+3]_465 23420 0.00019 29_[+3]_459 4138 0.00023 136_[+3]_352 33619 0.00025 264_[+3]_224 22449 0.00027 59_[+3]_429 26364 0.0003 78_[+3]_410 24042 0.0003 419_[+3]_69 14772 0.0003 403_[+3]_85 6752 0.00032 218_[+3]_270 25629 0.00035 430_[+3]_58 19818 0.00037 468_[+3]_20 20683 0.00047 374_[+3]_114 261633 0.00054 112_[+3]_376 42307 0.00065 42_[+3]_446 22049 0.00065 90_[+3]_398 21879 0.00065 152_[+3]_336 37277 0.00078 96_[+3]_392 269158 0.00078 384_[+3]_104 13551 0.00078 391_[+3]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=12 seqs=53 37539 ( 122) ATGAGGAAGAGG 1 269704 ( 154) GAGATGAAGAAG 1 24914 ( 123) ATGAGGAAGAGG 1 2611 ( 182) ATGAGGACGAAG 1 40028 ( 201) ATGAGGAGGAAG 1 268398 ( 50) GGGATGACGAAG 1 15259 ( 299) TAGATGAAGATG 1 26726 ( 196) AGGAGGATGATG 1 22694 ( 14) GTGATGATGATG 1 42074 ( 32) GTGATGATGAGG 1 21419 ( 111) TGGAGGAAGATG 1 268256 ( 194) ATGATGATGGTG 1 263147 ( 27) TTGATGATGAGG 1 4424 ( 29) GTGATGAAGCAG 1 38248 ( 300) TTGGTGAAGAAG 1 39979 ( 269) ACGAGGACGAGG 1 29049 ( 440) AGGCGGAAGAGG 1 24901 ( 212) AGGAGGAGGGTG 1 20452 ( 162) ATGATGATGTGG 1 37166 ( 324) AAGATGAAGATT 1 269763 ( 363) GGGAAGAGGAAG 1 8533 ( 109) AGGAGGAAAATG 1 31380 ( 342) AGGATGAGAAAG 1 4896 ( 286) GGGAGGAAAAAG 1 263181 ( 86) AGGCTGACGGAG 1 23462 ( 139) TGGATGATGGTG 1 22944 ( 51) AAGATGATGAAT 1 28100 ( 326) ACGAAGAAGGAG 1 260900 ( 155) GAGATGAAGGCG 1 9749 ( 416) TTGAAGAAGTAG 1 40034 ( 482) AAGAAGACGACG 1 ThpsCp134 ( 13) ATGGTGAACAAG 1 ThpsCp082 ( 57) ATGGTGAACAAG 1 980 ( 30) TTGGGGAGGATG 1 6760 ( 24) ATGGAGAGGAGG 1 23420 ( 30) AAGTGGAAGGAG 1 4138 ( 137) AGGAGGAGCATG 1 33619 ( 265) GGGGTGATGGTG 1 22449 ( 60) GCGCGGAGGAAG 1 26364 ( 79) GTGTTGAAGTAG 1 24042 ( 420) GAGCAGAAGGAG 1 14772 ( 404) ACGGTGAAGCAG 1 6752 ( 219) TAGATGACAGAG 1 25629 ( 431) GAGCTGAAGCGG 1 19818 ( 469) AAGAAGACGGCG 1 20683 ( 375) ATGTTGAGGCAG 1 261633 ( 113) AGGAGGATGTTT 1 42307 ( 43) TGGAGGAAGTGT 1 22049 ( 91) AAGATGAGAAGT 1 21879 ( 153) ACGCTGACAATG 1 37277 ( 97) AAGATGGCGGTG 1 269158 ( 385) TAGATGACGTGT 1 13551 ( 392) GTGCAGACGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 25917 bayes= 8.93074 E= 4.2e-006 108 -1237 11 -48 3 -130 21 44 -1237 -1237 203 -1237 139 -81 -89 -222 -78 -1237 39 100 -1237 -1237 203 -1237 192 -1237 -370 -1237 68 -16 -38 -48 -119 -204 176 -1237 113 -162 -12 -100 68 -204 0 10 -1237 -1237 185 -122 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 53 E= 4.2e-006 0.547170 0.000000 0.264151 0.188679 0.264151 0.094340 0.283019 0.358491 0.000000 0.000000 1.000000 0.000000 0.679245 0.132075 0.132075 0.056604 0.150943 0.000000 0.320755 0.528302 0.000000 0.000000 1.000000 0.000000 0.981132 0.000000 0.018868 0.000000 0.415094 0.207547 0.188679 0.188679 0.113208 0.056604 0.830189 0.000000 0.566038 0.075472 0.226415 0.132075 0.415094 0.056604 0.245283 0.283019 0.000000 0.000000 0.886792 0.113208 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [AG][TGA]GA[TG]GA[AC]G[AG][ATG]G -------------------------------------------------------------------------------- Time 61.62 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 13551 5.03e-04 297_[+1(5.84e-06)]_38_\ [+2(1.38e-05)]_71_[+1(6.02e-05)]_31 14772 5.26e-10 234_[+2(7.79e-10)]_37_\ [+1(5.39e-08)]_159_[+1(5.55e-05)]_7 15259 1.52e-03 126_[+1(4.72e-05)]_151_\ [+3(9.02e-06)]_190 19818 2.48e-03 116_[+2(8.06e-05)]_49_\ [+2(6.26e-06)]_293 20452 3.13e-05 79_[+2(3.37e-05)]_61_[+3(4.39e-05)]_\ 306_[+1(1.44e-06)] 20683 7.14e-05 256_[+1(6.51e-05)]_134_\ [+2(2.01e-07)]_68 21419 2.03e-04 110_[+3(1.44e-05)]_290_\ [+1(1.62e-06)]_45_[+1(1.16e-05)]_1 21879 9.15e-03 59_[+1(2.81e-06)]_420 22049 6.23e-05 66_[+2(2.84e-05)]_329_\ [+1(2.92e-07)]_63 22449 3.17e-04 137_[+2(9.39e-06)]_276_\ [+1(1.27e-05)]_45 22694 1.14e-06 13_[+3(1.06e-05)]_89_[+2(2.01e-07)]_\ 220_[+1(2.40e-05)]_124 22944 2.35e-04 50_[+3(7.92e-05)]_237_\ [+2(2.19e-05)]_42_[+1(6.51e-05)]_36_[+1(1.27e-05)]_60 23420 1.53e-07 160_[+2(1.73e-07)]_226_\ [+1(1.71e-07)]_72 23462 8.89e-07 138_[+3(7.92e-05)]_173_\ [+2(3.55e-08)]_122_[+1(1.39e-05)]_13 24042 5.30e-03 185_[+1(1.84e-05)]_294 24901 6.07e-07 112_[+2(5.08e-06)]_15_\ [+2(2.19e-05)]_6_[+2(4.69e-05)]_15_[+3(3.87e-05)]_223_[+1(1.29e-07)]_6_\ [+1(9.55e-06)]_6 24914 3.71e-06 41_[+2(4.57e-06)]_60_[+3(1.59e-06)]_\ 345_[+1(2.62e-05)] 25629 1.21e-02 80_[+1(4.29e-06)]_399 260900 4.03e-07 183_[+2(4.06e-07)]_169_\ [+1(3.33e-07)]_106 2611 1.79e-08 181_[+3(2.13e-06)]_123_\ [+2(2.95e-06)]_77_[+1(8.39e-08)]_65 261633 2.96e-04 89_[+2(2.09e-06)]_260_\ [+1(2.85e-05)]_109 263147 1.63e-07 26_[+3(2.26e-05)]_170_\ [+2(1.26e-05)]_[+2(4.96e-08)]_215_[+1(5.27e-06)]_14 263181 1.32e-04 13_[+2(5.08e-05)]_51_[+3(7.92e-05)]_\ 300_[+1(2.81e-06)]_82 26364 8.75e-03 375_[+1(4.29e-06)]_104 26726 4.05e-07 61_[+2(4.57e-06)]_24_[+3(4.98e-05)]_\ 77_[+3(1.06e-05)]_212_[+1(3.33e-07)]_60 268256 6.07e-06 92_[+1(3.33e-07)]_80_[+3(1.68e-05)]_\ 264_[+2(5.95e-05)]_10 268398 3.51e-08 49_[+3(5.20e-06)]_121_\ [+2(6.84e-09)]_32_[+2(5.95e-05)]_177_[+1(3.11e-05)]_46 269158 1.18e-04 88_[+1(7.62e-05)]_23_[+2(1.04e-05)]_\ 210_[+1(2.52e-06)]_116 269704 8.35e-06 153_[+3(1.59e-06)]_300_\ [+1(2.81e-06)]_14 269763 9.57e-05 124_[+2(7.69e-06)]_217_\ [+3(4.98e-05)]_45_[+1(2.01e-05)]_60 28100 7.60e-03 236_[+2(5.95e-05)]_68_\ [+3(8.88e-05)]_163 29049 1.50e-04 2_[+2(3.29e-06)]_3_[+2(5.08e-05)]_\ 13_[+2(6.93e-05)]_78_[+2(5.95e-05)]_259_[+3(3.87e-05)]_49 31380 1.42e-03 341_[+3(5.62e-05)]_36_\ [+2(1.52e-05)]_90 33619 7.60e-04 192_[+2(1.38e-05)]_256_\ [+1(2.62e-05)]_10 37166 4.51e-04 289_[+1(7.09e-07)]_13_\ [+3(4.98e-05)]_165 37277 2.33e-05 139_[+2(3.68e-06)]_315_\ [+1(6.27e-07)]_4 37539 3.71e-06 40_[+2(4.57e-06)]_60_[+3(1.59e-06)]_\ 345_[+1(2.62e-05)]_1 38248 1.06e-03 256_[+1(1.81e-06)]_22_\ [+3(3.40e-05)]_136_[+1(2.19e-05)]_32 39979 1.45e-04 83_[+2(9.33e-05)]_164_\ [+3(3.87e-05)]_190_[+1(3.48e-06)]_9 40028 9.57e-06 200_[+3(3.46e-06)]_159_\ [+1(1.16e-05)]_55_[+1(4.31e-07)]_32 40034 2.00e-03 68_[+1(9.03e-07)]_53_[+1(1.84e-05)]_\ 218_[+1(4.72e-05)]_9_[+1(5.84e-06)]_26_[+1(3.11e-05)]_21 4138 3.54e-03 317_[+2(6.93e-05)]_72_\ [+1(3.68e-05)]_69 42074 4.39e-06 8_[+2(1.14e-05)]_2_[+3(1.24e-05)]_\ 33_[+3(4.98e-05)]_6_[+3(5.62e-05)]_152_[+3(1.68e-05)]_171_[+1(1.62e-06)]_\ 38 42307 4.74e-03 271_[+1(9.55e-06)]_13_\ [+1(2.19e-05)]_174 4424 1.34e-05 28_[+3(2.96e-05)]_120_\ [+2(2.35e-06)]_18_[+2(4.32e-05)]_183_[+1(1.16e-05)]_76 4896 1.67e-04 23_[+2(9.33e-05)]_241_\ [+3(7.09e-05)]_46_[+1(2.26e-06)]_136 6752 2.82e-05 101_[+1(9.58e-05)]_271_\ [+1(8.95e-09)]_86 6760 2.87e-05 175_[+2(8.06e-05)]_138_\ [+1(3.48e-06)]_119_[+1(1.29e-07)]_5 8533 6.17e-04 42_[+2(1.38e-05)]_45_[+3(5.62e-05)]_\ 300_[+1(8.88e-05)]_59 9749 8.62e-04 16_[+1(1.68e-05)]_181_\ [+1(6.27e-07)]_261 980 3.52e-04 90_[+1(2.02e-06)]_126_\ [+2(9.33e-05)]_193_[+1(6.51e-05)]_28 ThpsCp082 9.75e-05 323_[+1(2.85e-05)]_11_\ [+2(1.47e-06)]_124 ThpsCp134 9.75e-05 279_[+1(2.85e-05)]_11_\ [+2(1.47e-06)]_168 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************