******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/432/432.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10292 1.0000 500 10470 1.0000 500 12183 1.0000 500 14384 1.0000 500 18158 1.0000 500 19311 1.0000 500 20267 1.0000 500 24056 1.0000 500 24759 1.0000 500 25147 1.0000 500 25465 1.0000 500 31551 1.0000 500 3287 1.0000 500 33337 1.0000 500 34218 1.0000 500 4567 1.0000 500 7926 1.0000 500 882 1.0000 500 9679 1.0000 500 9849 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/432/432.seqs.fa -oc motifs/432 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 20 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 10000 N= 20 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.249 C 0.237 G 0.247 T 0.266 Background letter frequencies (from dataset with add-one prior applied): A 0.250 C 0.237 G 0.247 T 0.266 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 12 llr = 169 E-value = 1.1e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 7163811a3242::2338471 pos.-specific C 3933:88:484541863:339 probability G :::1::::1:2::3:11:3:: matrix T ::13311:2::366::321:: bits 2.1 * 1.9 * 1.7 * * * 1.5 * * * * * Relative 1.2 * **** * * * * Entropy 1.0 ** **** * * * * ** (20.3 bits) 0.8 *** **** * * ** * ** 0.6 *** **** ******* * ** 0.4 *** **** ******* * ** 0.2 ********************* 0.0 --------------------- Multilevel ACAAACCACCACTTCCAAAAC consensus C CTT A CTCG AC CC sequence C T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 14384 470 1.01e-10 ATCTAGATAC ACCAACCACCACTTCAAAAAC AGCCTCCACC 3287 458 1.14e-08 CGCTATATCA ACCAACCAACAATTCCAATAC AGCTCTCTTT 34218 479 5.22e-08 CATCAAGACA ACAAACCACCCTCCAACAAAC C 24056 438 5.22e-08 TCGCTTCGCC CCATTCCAACGCCTCCTACCC CAACACATAC 18158 466 5.22e-08 CCAACGCTTC ACATACAACACCCTCCCAACC TGCACCTCCA 25465 433 1.11e-07 CGTGAATCCA CCTTACCAGCCCTTCACAACC CCCGTTCACA 33337 383 2.38e-07 ACGAATCTTC CCACTCCATCATCGCCGAGAC GGATGCTGTT 25147 466 2.79e-07 GCCTCGAACG AAATATCAACACCGCCCACAC ATTGCACATT 9849 90 3.80e-07 AGGAGGCGTC ACCGACCACCGTTGCAATACC TTACTCTCAT 4567 3 6.75e-07 GT CCACAATACCCTTGCCTAGAC CCACCGTCAA 10292 141 7.23e-07 ACACATCAAC ACAATCCATCACTTCGTACAA CACTCTCACC 882 3 7.73e-07 CA ACCCACCAAACATTACATGAC TCATACTCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 14384 1e-10 469_[+1]_10 3287 1.1e-08 457_[+1]_22 34218 5.2e-08 478_[+1]_1 24056 5.2e-08 437_[+1]_42 18158 5.2e-08 465_[+1]_14 25465 1.1e-07 432_[+1]_47 33337 2.4e-07 382_[+1]_97 25147 2.8e-07 465_[+1]_14 9849 3.8e-07 89_[+1]_390 4567 6.7e-07 2_[+1]_477 10292 7.2e-07 140_[+1]_339 882 7.7e-07 2_[+1]_477 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=12 14384 ( 470) ACCAACCACCACTTCAAAAAC 1 3287 ( 458) ACCAACCAACAATTCCAATAC 1 34218 ( 479) ACAAACCACCCTCCAACAAAC 1 24056 ( 438) CCATTCCAACGCCTCCTACCC 1 18158 ( 466) ACATACAACACCCTCCCAACC 1 25465 ( 433) CCTTACCAGCCCTTCACAACC 1 33337 ( 383) CCACTCCATCATCGCCGAGAC 1 25147 ( 466) AAATATCAACACCGCCCACAC 1 9849 ( 90) ACCGACCACCGTTGCAATACC 1 4567 ( 3) CCACAATACCCTTGCCTAGAC 1 10292 ( 141) ACAATCCATCACTTCGTACAA 1 882 ( 3) ACCCACCAAACATTACATGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 9600 bayes= 9.30053 E= 1.1e-002 142 49 -1023 -1023 -158 195 -1023 -1023 122 49 -1023 -167 42 8 -157 32 159 -1023 -1023 -9 -158 181 -1023 -167 -158 181 -1023 -167 200 -1023 -1023 -1023 42 81 -157 -67 -58 181 -1023 -1023 74 81 -57 -1023 -58 108 -1023 32 -1023 81 -1023 113 -1023 -151 43 113 -58 181 -1023 -1023 42 130 -157 -1023 42 49 -157 -9 174 -1023 -1023 -67 74 8 2 -167 142 49 -1023 -1023 -158 195 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 12 E= 1.1e-002 0.666667 0.333333 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 0.583333 0.333333 0.000000 0.083333 0.333333 0.250000 0.083333 0.333333 0.750000 0.000000 0.000000 0.250000 0.083333 0.833333 0.000000 0.083333 0.083333 0.833333 0.000000 0.083333 1.000000 0.000000 0.000000 0.000000 0.333333 0.416667 0.083333 0.166667 0.166667 0.833333 0.000000 0.000000 0.416667 0.416667 0.166667 0.000000 0.166667 0.500000 0.000000 0.333333 0.000000 0.416667 0.000000 0.583333 0.000000 0.083333 0.333333 0.583333 0.166667 0.833333 0.000000 0.000000 0.333333 0.583333 0.083333 0.000000 0.333333 0.333333 0.083333 0.250000 0.833333 0.000000 0.000000 0.166667 0.416667 0.250000 0.250000 0.083333 0.666667 0.333333 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [AC]C[AC][ATC][AT]CCA[CA]C[AC][CT][TC][TG]C[CA][ACT]A[ACG][AC]C -------------------------------------------------------------------------------- Time 3.45 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 19 llr = 214 E-value = 6.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 1:1:323542:352:21::11 pos.-specific C 2:23:2:211:4::4:17:3: probability G 53276373378258:84:718 matrix T 375:14::31211:6:53351 bits 2.1 1.9 1.7 1.5 * * Relative 1.2 * * * * Entropy 1.0 * * * * *** ** * (16.2 bits) 0.8 * ** * * **** ** * 0.6 * ** ** ** **** ** * 0.4 ** ** ** ** ********* 0.2 ***** *************** 0.0 --------------------- Multilevel GTTGGTGAAGGCAGTGTCGTG consensus TGGCAGAGG AG CAGTTC sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 10470 242 4.23e-10 GCATCGTTTG GTTGGTGAGGGAGGTGGTGTG GGTACCGTCC 9849 419 2.66e-09 GGGCTGGATC GTTGGTGAAGTCGGCGTCGCG GGCGGAGCAT 882 378 4.81e-08 TGATACGATG TTGCAGGAAGGCAGCGTCGTG AGACGTGTCG 25147 140 9.44e-08 TGTTGCCAAC GTTGGGGGGGGGGGCAGCGCG CCCATGTTTG 24759 405 2.26e-07 GGGGGCAAGT GGGCATGGGGGCAGTGTCTTG ACCTCTTTAA 9679 29 5.58e-07 TTGGATAGAG TTTGGTGGAAGGAATGTCGCG GTTGTTTCAA 12183 142 7.66e-07 ATAGTATAAA GTTGGCGATAGTGGTGGCGTA TTCGTCGGTG 33337 218 9.40e-07 TCCCTCAAAA GTTGGAACAGTAAGTGACGTG TAATATGTAT 18158 228 1.40e-06 TGGATAGAGA GTAGTAGATGTCGGTGGCGTG ATGTGTAGAA 10292 434 2.03e-06 AGCGTCGTAT CTTGGCGAAGGAGGTGCCTTT CTAGCGTTGA 25465 41 7.18e-06 GCTTGCAAGT GTTGGGAATAGAGACGTTGTA CTGTTGAAAG 20267 167 7.75e-06 TGGGTTCAAA GGCGGTGACGGCGGTAGTGGG ACGATGAGGC 34218 121 9.01e-06 TCCAAACTTT TTGCGAGAGGGCAGTGATTAG CACTTCATCT 14384 139 9.01e-06 TGGCGGCTTT CGCGAGAAGGGGAGTGTTTCG TGTTTGAGGC 3287 281 1.12e-05 GTTCACCGGC AGTGGCAGTGGCAGCGGCTTT GCACTGAGCT 4567 208 1.58e-05 ACTCCAGTGG GTGCACACACGCAGTAGCTTG TCCAATATGT 31551 254 2.81e-05 GGTGATGGTA CGTGATGCTTGATGTGTCGCG TATCTTTTAA 19311 346 2.81e-05 CACAGACGTC TGACGTGGACGTAGCATCGCG GTAGTGCGAT 7926 187 3.16e-05 TTGCTGCCAT TTCGTGAGAGGAGACGTTGAG TTTGGAAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10470 4.2e-10 241_[+2]_238 9849 2.7e-09 418_[+2]_61 882 4.8e-08 377_[+2]_102 25147 9.4e-08 139_[+2]_340 24759 2.3e-07 404_[+2]_75 9679 5.6e-07 28_[+2]_451 12183 7.7e-07 141_[+2]_338 33337 9.4e-07 217_[+2]_262 18158 1.4e-06 227_[+2]_252 10292 2e-06 433_[+2]_46 25465 7.2e-06 40_[+2]_439 20267 7.8e-06 166_[+2]_313 34218 9e-06 120_[+2]_359 14384 9e-06 138_[+2]_341 3287 1.1e-05 280_[+2]_199 4567 1.6e-05 207_[+2]_272 31551 2.8e-05 253_[+2]_226 19311 2.8e-05 345_[+2]_134 7926 3.2e-05 186_[+2]_293 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=19 10470 ( 242) GTTGGTGAGGGAGGTGGTGTG 1 9849 ( 419) GTTGGTGAAGTCGGCGTCGCG 1 882 ( 378) TTGCAGGAAGGCAGCGTCGTG 1 25147 ( 140) GTTGGGGGGGGGGGCAGCGCG 1 24759 ( 405) GGGCATGGGGGCAGTGTCTTG 1 9679 ( 29) TTTGGTGGAAGGAATGTCGCG 1 12183 ( 142) GTTGGCGATAGTGGTGGCGTA 1 33337 ( 218) GTTGGAACAGTAAGTGACGTG 1 18158 ( 228) GTAGTAGATGTCGGTGGCGTG 1 10292 ( 434) CTTGGCGAAGGAGGTGCCTTT 1 25465 ( 41) GTTGGGAATAGAGACGTTGTA 1 20267 ( 167) GGCGGTGACGGCGGTAGTGGG 1 34218 ( 121) TTGCGAGAGGGCAGTGATTAG 1 14384 ( 139) CGCGAGAAGGGGAGTGTTTCG 1 3287 ( 281) AGTGGCAGTGGCAGCGGCTTT 1 4567 ( 208) GTGCACACACGCAGTAGCTTG 1 31551 ( 254) CGTGATGCTTGATGTGTCGCG 1 19311 ( 346) TGACGTGGACGTAGCATCGCG 1 7926 ( 187) TTCGTGAGAGGAGACGTTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 9600 bayes= 9.87679 E= 6.0e-002 -224 -59 109 -2 -1089 -1089 35 136 -124 -59 -23 98 -1089 15 157 -1089 8 -1089 135 -134 -66 -17 9 47 34 -1089 147 -1089 108 -59 35 -1089 75 -217 9 -2 -66 -117 147 -233 -1089 -1089 177 -75 34 83 -65 -134 92 -1089 94 -233 -66 -1089 177 -1089 -1089 64 -1089 125 -24 -1089 167 -1089 -124 -217 57 83 -1089 153 -1089 25 -1089 -1089 147 25 -124 41 -223 98 -124 -1089 167 -134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 19 E= 6.0e-002 0.052632 0.157895 0.526316 0.263158 0.000000 0.000000 0.315789 0.684211 0.105263 0.157895 0.210526 0.526316 0.000000 0.263158 0.736842 0.000000 0.263158 0.000000 0.631579 0.105263 0.157895 0.210526 0.263158 0.368421 0.315789 0.000000 0.684211 0.000000 0.526316 0.157895 0.315789 0.000000 0.421053 0.052632 0.263158 0.263158 0.157895 0.105263 0.684211 0.052632 0.000000 0.000000 0.842105 0.157895 0.315789 0.421053 0.157895 0.105263 0.473684 0.000000 0.473684 0.052632 0.157895 0.000000 0.842105 0.000000 0.000000 0.368421 0.000000 0.631579 0.210526 0.000000 0.789474 0.000000 0.105263 0.052632 0.368421 0.473684 0.000000 0.684211 0.000000 0.315789 0.000000 0.000000 0.684211 0.315789 0.105263 0.315789 0.052632 0.526316 0.105263 0.000000 0.789474 0.105263 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [GT][TG][TG][GC][GA][TGC][GA][AG][AGT]GG[CA][AG]G[TC][GA][TG][CT][GT][TC]G -------------------------------------------------------------------------------- Time 7.01 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 12 sites = 20 llr = 176 E-value = 2.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :4:34::3:1:: pos.-specific C 81:73:8:7::4 probability G 15:13::52::4 matrix T 21a:1a232aa3 bits 2.1 1.9 * * * 1.7 * * ** 1.5 * * ** Relative 1.2 * ** ** Entropy 1.0 * * ** ** (12.7 bits) 0.8 * ** ** *** 0.6 * ** ** *** 0.4 * ** ******* 0.2 ************ 0.0 ------------ Multilevel CGTCATCGCTTC consensus A AC TTG G sequence G A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 31551 308 3.41e-07 CTCGAAATCT CATCATCGCTTC TTATACCGTA 9849 240 3.00e-06 CCAAAAGAGT CGTAATCGCTTG TTGGACATGT 19311 140 3.00e-06 GCGTTTGCAA CATCGTCACTTG CTGTGCACCG 25465 24 7.60e-06 CTGCTGTTGT TGTCATCGCTTG CAAGTGTTGG 882 25 8.74e-06 TTACATGACT CATACTCTCTTC CAGTTGCTTC 24056 76 1.17e-05 CCGATATGAA CCTCCTCACTTC ATCCATCGCA 18158 115 1.17e-05 TGATGGGAGA CATAATCACTTG ATGCCGGCGG 10292 386 1.36e-05 AGAGCCATCA CGTCGTCAGTTG TCCAGCTTTC 34218 144 1.57e-05 GTGATTAGCA CTTCATCTCTTG TACTCTTCAT 24759 321 2.16e-05 CGGACTGTTG CATCGTTGCTTT CAGTTGGGTT 20267 205 2.40e-05 GGCTGTTGCT CGTCGTCAGTTT CGGGAAATGC 9679 433 2.90e-05 AATGTCTCGC CATCTTCTCTTC ATTCATCCTT 4567 157 4.02e-05 CCATGGTGGA GGTACTCGCTTC GAGCTCGTTG 33337 268 4.81e-05 CTCGTTTCAT CGTACTCGTTTT CGTTTCCCTG 3287 396 4.81e-05 TACACTCATT CGTCATCTCATC CTATAGGCAT 10470 404 1.09e-04 CTCGCCCTCT CGTCATTTTTTT TTTCGGAGCG 12183 298 1.25e-04 AAGTGATATG TGTGCTCTCTTG CCAAGGATGG 14384 310 1.98e-04 TGTGCTTACG TATCCTTGTTTC CATTTGAACC 7926 422 2.33e-04 TACTCTATTT CCTGGTCGGTTT CTACCACAAG 25147 115 4.12e-04 TGTTGCGTTC GTTCGTTGGTTC GGGTGTTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 31551 3.4e-07 307_[+3]_181 9849 3e-06 239_[+3]_249 19311 3e-06 139_[+3]_349 25465 7.6e-06 23_[+3]_465 882 8.7e-06 24_[+3]_464 24056 1.2e-05 75_[+3]_413 18158 1.2e-05 114_[+3]_374 10292 1.4e-05 385_[+3]_103 34218 1.6e-05 143_[+3]_345 24759 2.2e-05 320_[+3]_168 20267 2.4e-05 204_[+3]_284 9679 2.9e-05 432_[+3]_56 4567 4e-05 156_[+3]_332 33337 4.8e-05 267_[+3]_221 3287 4.8e-05 395_[+3]_93 10470 0.00011 403_[+3]_85 12183 0.00012 297_[+3]_191 14384 0.0002 309_[+3]_179 7926 0.00023 421_[+3]_67 25147 0.00041 114_[+3]_374 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=12 seqs=20 31551 ( 308) CATCATCGCTTC 1 9849 ( 240) CGTAATCGCTTG 1 19311 ( 140) CATCGTCACTTG 1 25465 ( 24) TGTCATCGCTTG 1 882 ( 25) CATACTCTCTTC 1 24056 ( 76) CCTCCTCACTTC 1 18158 ( 115) CATAATCACTTG 1 10292 ( 386) CGTCGTCAGTTG 1 34218 ( 144) CTTCATCTCTTG 1 24759 ( 321) CATCGTTGCTTT 1 20267 ( 205) CGTCGTCAGTTT 1 9679 ( 433) CATCTTCTCTTC 1 4567 ( 157) GGTACTCGCTTC 1 33337 ( 268) CGTACTCGTTTT 1 3287 ( 396) CGTCATCTCATC 1 10470 ( 404) CGTCATTTTTTT 1 12183 ( 298) TGTGCTCTCTTG 1 14384 ( 310) TATCCTTGTTTC 1 7926 ( 422) CCTGGTCGGTTT 1 25147 ( 115) GTTCGTTGGTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 9780 bayes= 8.93074 E= 2.4e+000 -1097 166 -131 -83 49 -124 86 -141 -1097 -1097 -1097 191 0 146 -131 -1097 49 34 28 -241 -1097 -1097 -1097 191 -1097 175 -1097 -41 0 -1097 86 17 -1097 146 -31 -83 -232 -1097 -1097 184 -1097 -1097 -1097 191 -1097 75 50 -9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 20 E= 2.4e+000 0.000000 0.750000 0.100000 0.150000 0.350000 0.100000 0.450000 0.100000 0.000000 0.000000 0.000000 1.000000 0.250000 0.650000 0.100000 0.000000 0.350000 0.300000 0.300000 0.050000 0.000000 0.000000 0.000000 1.000000 0.000000 0.800000 0.000000 0.200000 0.250000 0.000000 0.450000 0.300000 0.000000 0.650000 0.200000 0.150000 0.050000 0.000000 0.000000 0.950000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.350000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- C[GA]T[CA][ACG]T[CT][GTA][CG]TT[CGT] -------------------------------------------------------------------------------- Time 10.63 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10292 4.93e-07 140_[+1(7.23e-07)]_224_\ [+3(1.36e-05)]_36_[+2(2.03e-06)]_46 10470 1.40e-06 241_[+2(4.23e-10)]_238 12183 7.23e-04 141_[+2(7.66e-07)]_338 14384 6.34e-09 138_[+2(9.01e-06)]_310_\ [+1(1.01e-10)]_10 18158 2.78e-08 114_[+3(1.17e-05)]_101_\ [+2(1.40e-06)]_217_[+1(5.22e-08)]_14 19311 1.45e-04 139_[+3(3.00e-06)]_194_\ [+2(2.81e-05)]_134 20267 2.38e-03 166_[+2(7.75e-06)]_17_\ [+3(2.40e-05)]_284 24056 1.92e-05 29_[+1(6.13e-06)]_25_[+3(1.17e-05)]_\ 350_[+1(5.22e-08)]_42 24759 4.30e-05 320_[+3(2.16e-05)]_72_\ [+2(2.26e-07)]_75 25147 2.60e-07 139_[+2(9.44e-08)]_97_\ [+2(7.00e-05)]_187_[+1(2.79e-07)]_14 25465 1.66e-07 23_[+3(7.60e-06)]_5_[+2(7.18e-06)]_\ 155_[+3(2.64e-05)]_204_[+1(1.11e-07)]_47 31551 4.66e-05 253_[+2(2.81e-05)]_33_\ [+3(3.41e-07)]_181 3287 1.67e-07 280_[+2(1.12e-05)]_94_\ [+3(4.81e-05)]_50_[+1(1.14e-08)]_22 33337 2.79e-07 217_[+2(9.40e-07)]_29_\ [+3(4.81e-05)]_103_[+1(2.38e-07)]_97 34218 1.99e-07 120_[+2(9.01e-06)]_2_[+3(1.57e-05)]_\ 323_[+1(5.22e-08)]_1 4567 7.65e-06 2_[+1(6.75e-07)]_133_[+3(4.02e-05)]_\ 39_[+2(1.58e-05)]_272 7926 1.38e-02 186_[+2(3.16e-05)]_293 882 1.15e-08 2_[+1(7.73e-07)]_1_[+3(8.74e-06)]_\ 341_[+2(4.81e-08)]_102 9679 2.65e-05 28_[+2(5.58e-07)]_383_\ [+3(2.90e-05)]_56 9849 1.51e-10 89_[+1(3.80e-07)]_129_\ [+3(3.00e-06)]_77_[+2(8.82e-05)]_69_[+2(2.66e-09)]_22_[+2(5.24e-06)]_18 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************